Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
NM_001352965.1
Aligned Length:
3182
Identities:
1533
Gaps:
1627

Alignment

Query    1  ATGGGCTCCAGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGA-------CTACAGTGACCAGGAAGTTCTA  141
                             .||||     ||||      ||.|.|||       ||.||| ||.||.|||||||||
Sbjct    1  -----------------ATGAG-----GAGG------CCTGGGGACCATGGGCTCCAG-GATCAAGAAGTTCTA  45

Query  142  CAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCAC  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   46  CAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCAC  119

Query  216  ATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCT  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  ATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCT  193

Query  290  TCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACA  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  194  TCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACA  267

Query  364  AAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTC  437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  AAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTC  341

Query  438  TGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAA  511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  342  TGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAA  415

Query  512  ATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGC  585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  ATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGC  489

Query  586  CGGATACTCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCC  659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  CGGATACTCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCC  563

Query  660  CATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCT  733
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  564  CATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCT  637

Query  734  ACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAAT  807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  638  ACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAAT  711

Query  808  GTGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAA  881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  712  GTGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAA  785

Query  882  GAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTT  955
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  786  GAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTT  859

Query  956  TCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTG  1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  860  TCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTG  933

Query 1030  TCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTAT  1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  934  TCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTAT  1007

Query 1104  TGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCG  1177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008  TGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCG  1081

Query 1178  AGTACGCTGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAAT  1251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082  AGTACGCTGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAAT  1155

Query 1252  ACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAAT  1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156  ACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAAT  1229

Query 1326  AAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGC  1399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230  AAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGC  1303

Query 1400  TGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACA  1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304  TGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACA  1377

Query 1474  GTCCACTTTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGG  1547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378  GTCCACTTTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGG  1451

Query 1548  CCGGAGGACGTCTGTGCCGAGCCCTGAGCA------AAACACCATTGCAACACCA-GC-----TACACTCC---  1606
            ||||||||||||||||||||||||||||||      ||| .||.||||.||||.| ||     |.|.||||   
Sbjct 1452  CCGGAGGACGTCTGTGCCGAGCCCTGAGCACCTGGTAAA-GCCCTTGCGACACTATGCGGTCTTCCTCTCCGAA  1524

Query 1607  -ACATCCTACAGA-----AAAGCATTACCCATTTTGCGGCCA-AGTTCCCGA-------------CGAGAGGCT  1660
             || |||| |.||     ||.|      |||    ||||..| ||..|||||             ||||||   
Sbjct 1525  GAC-TCCT-CTGATGATGAATG------CCA----GCGGGAAGAGGGCCCGAGCTCTGGCTTCACCGAGAG---  1583

Query 1661  GGACCTCTTCATCAC------------AT---------------------------------------------  1677
               |.|.|||.||.|            ||                                             
Sbjct 1584  ---CTTTTTCTTCTCCGCTCCCTTTGAATGGCCGCAGCCGTATCGGACACTCAGGGAGTCAGACAGCGCGGAAG  1654

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1655  GCGACGAGGCAGAGAGTCCAGAGCAGCAAGTGCGGAAGTCCACAGGCCCTGTCCCAGCTCCCCCTGACCGGGCT  1728

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1729  GCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAACCTGGACATGGAGGCCGCACTGCAGCCACTGGGCCAGGC  1802

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1803  CAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCTGAGGGAGCAGCCAGGGACCTTTGACTATCAGAGGCTGG  1876

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1877  ATCTGGGCGGGAGTGAGAGGAGCCGCGGGGTGACAGTGGCCTTGAAGCTTACCCACCCGTACAACAAGCTCTGG  1950

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1951  AGCCTGGGCCAGGACGACATGGCCATCCCCAGCAAGCCCCCAGCTGCCTCCCCTGAGAAGCCCTCGGCCCTGCT  2024

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2025  CGGGAACTCCCTGGCCCTGCCTCGAAGGCCCCAGAACCGGGACAGCATCCTGAACCCCAGTGACAAGGAGGAGG  2098

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2099  TGCCCACCCCTACTCTGGGCAGCATCACCATCCCCCGGCCCCAAGGCAGGAAGACCCCAGAGCTGGGCATCGTG  2172

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2173  CCTCCACCGCCCATTCCCCGCCCGGCCAAGCTCCAGGCTGCCGGCGCCGCACTTGGTGACGTCTCAGAGCGGCT  2246

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2247  GCAGACGGATCGGGACAGGCGAGCTGCCCTGAGTCCAGGGCTCCTGCCTGGTGTTGTCCCCCAAGGCCCCACTG  2320

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2321  AACTGCTCCAGCCGCTCAGCCCTGGCCCCGGGGCTGCAGGCACGAGCAGTGACGCCCTGCTCGCCCTCCTGGAC  2394

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2395  CCGCTCAGCACAGCCTGGTCAGGCAGCACCCTCCCGTCACGCCCCGCCACCCCGAATGTAGCCACCCCATTCAC  2468

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2469  CCCCCAATTCAGCTTCCCCCCTGCAGGGACACCCACCCCATTCCCACAGCCACCACTCAACCCCTTTGTCCCAT  2542

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2543  CCATGCCAGCAGCCCCACCCACCCTGCCCCTGGTCTCCACACCAGCCGGGCCTTTCGGGGCCCCTCCAGCTTCC  2616

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2617  CTGGGGCCGGCTTTTGCGTCCGGCCTCCTGCTGTCCAGTGCTGGCTTCTGTGCCCCTCACAGGTCTCAGCCCAA  2690

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2691  CCTCTCCGCCCTCTCCATGCCCAACCTCTTTGGCCAGATGCCCATGGGCACCCACACGAGCCCCCTACAGCCGC  2764

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2765  TGGGTCCCCCAGCAGTTGCCCCGTCGAGGATCCGAACGTTGCCCCTGGCCCGCTCAAGTGCCAGGGCTGCTGAG  2838

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2839  ACCAAGCAGGGGCTGGCCCTGAGGCCTGGAGACCCCCCGCTTCTGCCTCCCAGGCCCCCTCAAGGCCTGGAGCC  2912

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2913  AACACTGCAGCCCTCTGCTCCTCAACAGGCCAGAGACCCCTTTGAGGATTTGTTACAGAAAACCAAGCAAGACG  2986

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2987  TGAGCCCGAGTCCGGCCCTGGCCCCGGCCCCAGACTCGGTGGAGCAGCTCAGGAAGCAGTGGGAGACCTTCGAG  3060

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