Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
NR_148208.2
Aligned Length:
3616
Identities:
1676
Gaps:
1939

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGCGCGCCGGCGACCATGGCGTTCGCCGGGCTGGAGCGAGTACATTAACCCCTGGAGGCGGCGGCGGCGGCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGAGCGAGCCTCGAGCGGGCGGGCCCCAGCCTGAGGGAAGGGAGGAAGGGGCGGGGAGAGCGCCAGAGGGAGG  148

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct  149  CCGGTCGGCCGCGGGCGGGCGGGCAGCGCAGCGCCGAGCGGGGCCCGCGGGCCCATGAGGAGGCCTGGGGACCA  222

Query    2  TGGGCTCCAGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGT  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGGGCTCCAGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGT  296

Query   76  GGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTT  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTT  370

Query  150  GACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGC  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGC  444

Query  224  TCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATC  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATC  518

Query  298  TTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACA  371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACA  592

Query  372  GGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATC  445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATC  666

Query  446  TCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACA  519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACA  740

Query  520  GAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACT  593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACT  814

Query  594  CATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACT  667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACT  888

Query  668  GGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATA  741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATA  962

Query  742  GGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACAC  815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACAC  1036

Query  816  CAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGC  889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGC  1110

Query  890  TGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGT  963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGT  1184

Query  964  AGCTACCGAAACGCTCTGAAAATCGAGCCGGAG-GAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACT  1036
            |||||||||||||||||||||||||||||||.| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGCTACCGAAACGCTCTGAAAATCGAGCCGGTGAGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACT  1258

Query 1037  ACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGT  1332

Query 1111  CGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGC  1406

Query 1185  TGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAA  1480

Query 1259  AGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAG  1554

Query 1333  GTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAA  1628

Query 1407  GACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACT  1702

Query 1481  TTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGG  1776

Query 1555  ACGTCTGTGCCGAGCCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTAC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  ACGTCTGTGCCGAGCCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTAC  1850

Query 1629  CCATTTTGCGGCCAAGTTCCCGACGAGAGGCTGGACCTCTTCATCACAT-------------------------  1677
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct 1851  CCATTTTGCGGCCAAGTTCCCGACGAGAGGCTGGACCTCTTCATCACATTGACTTACGCCGTTGCTTTTCCAGA  1924

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1925  CTGGGCAGAGGGGCTGACTTCGCAGTGTGTGCCAAAGAGCCGGTGTCTGATAATCCCATTTTCCTGCTTATCAC  1998

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1999  CTGAACTGTGTCAGTATCACTTTTAGTTTTGTTGGTTGGTTGGTTTGTTGTTTGTTTAATATGCCCTGTTTTCT  2072

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2073  ACTTCTGTTGGAAAATATTTGGGGTTGAAATAAACCAGTGGGAGCATGGGAGCCAGTTTGGTGGTTGGCAAACT  2146

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2147  ACCAGTGATAGAAAACAAATGACAGGTTTTCTGTGAGCGTACGTCACAGTGGCTCGGGCCCACAAGGAGACAGA  2220

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2221  GGGGTACGTTTCAGGACATCATTCCAAGGGTTTCTGTTCACGTTTGTTTAACGAGGAAGGGGAAGTTGTTCTCC  2294

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2295  CATAATACCAGTGGTATTTCTAGTGCAACCCGGGTGTTTTTCTACGCCTCTTCCCATGCTGCTTCCCCACCCCC  2368

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2369  CCACTGTGCTCCGCCCCTTCCAAATGCCATGTCACAACAGCACTTGGATGTGTTTTTCTCAACTGTCATCAGCT  2442

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2443  CCAGCTGGCAGGACCAACTTCTTGAAACACAGGAAGCATCCAGCGGAAAATATTTTAATAAAACAGACTCCTCA  2516

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2517  TAAAATATTGTTCGGGGGAGGGGGAAGAAACCGGCTCCACCAATCTGTCGGCATTGTATTGGGAGATGTGAGAA  2590

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2591  GCCAGGCTGGCAGCAGGGGCCCGATCCTAATGGGCCTTTGTCAGGTGGTGGTTCCGTGTTGGGCACACGGACTT  2664

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2665  GGTGCCTGGCCCTTTAATCTGGCCTGGGTTTTCTTGAATCACAGATCTTCATCTCCACTGGGAATATCAAAGTG  2738

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2739  CTTGGGAAACTTAGAAGACTGGGGCAGCAGAAGGGGATGCAGGATCTTTGAAGTGGAGAGGAGAGATTCATTCC  2812

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2813  TCCTGACTTCTTGCCCCAACTCTCACTTCCAATTGCACATTAAATAATCCCAGCACTTTGGGAGGCCAAGGCGA  2886

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2887  GCGGATCACCTGAGGTCAGGGGTTCGAGACCAGCCTGGGCAACATGGCGAAACCCCGTCTCTACTAAAAATACA  2960

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2961  AAAATTAGCCGAGTGTGGTGGCGCACCCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGA  3034

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3035  ACCCAGGAGGCGGAGGCTGCCGTGAGCTGAGATCACACCACCACACTCCAGCCTGTGCAACAGAGTGAGACTCT  3108

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3109  GTCTCAAAAATAAAATAACCAGCTTTGTGGACAGCAAGATGGGGCTGATTAAGAGTAAGACTGTCTCCTGGAGT  3182

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3183  AGCTGAGCATCCTGGGACTCATCAGGGCCCAGAAACACTAGCCAGCCACTCTCTGGCCAGTCCACCCCTGAAGT  3256

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3257  TCATTTCTTCCTTCCCAGCTGATGTCCATCCCTCCATCATTCCATCTGTCCATTCGTGCATTCATTCATTCAGC  3330

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3331  AAGTATCTTTGAAAACCTACTAGGCGCAAGCACGGACGATTTTTTTAAAGGAGGCCTTAAAAGGGAGTCCCCAT  3404

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3405  GCTGACTCTTGGTTGACTTGCATTTTCCCAAAATGAAATTTTCCTGTGTCAAATTTTCTTTCTGAATCAATGAT  3478

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3479  AGGTTTCCTAGTCCCTTAAAACTGGCCGTTGGCAATTGGAAGAAGACTTTTTTGAAGATTTGTGGGGGAAACAT  3552

Query 1678  ----------------------------------------------------------------  1677
                                                                            
Sbjct 3553  TCCCTTTACTTTTCAGGTAACATTACTTGGTTAATATTCAGTTACTAAATCTCTTCAAGAAGTA  3616

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.