Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
XM_006498004.1
Aligned Length:
3076
Identities:
1480
Gaps:
1424

Alignment

Query    1  ATG----GGCTCC-----AGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCC  65
            |||    |..|||     ||      |||.||.||||||||.|||||||||||.|||||.||||||||.|||||
Sbjct    1  ATGATATGTTTCCTTTGTAG------GCAAAACCCAGAGACTACATTTGAAGTGTATGTGGAAGTGGCTTATCC  68

Query   66  CAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTC  139
            .|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct   69  TAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGACCAGGAAGTTC  142

Query  140  TACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTC  213
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  143  TACAGACTTTGACCAAGTTTTGTTTTCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTC  216

Query  214  ACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTG  287
            |||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  217  ACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTG  290

Query  288  CTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGA  361
            ||||||||||||||||||.||||||||||||||||||||.||||||||.|||||||||.|||||||||||||||
Sbjct  291  CTTCTGTATCTTAAGCTACCTCCCCTGGTTCGAGGTATTCTATAAGCTCCTTAACATCTTGGCAGATTACACGA  364

Query  362  CAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTG  435
            |.|||.|||||||||.||||||||||||.|||||||||||||||||||.|||||||||||||||.||.||||||
Sbjct  365  CGAAACGACAGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATCCCTGATCCTGGAGTG  438

Query  436  TCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAG  509
            |||||.||.|||||.|||||||||||.||.|||||||||||||.||||||.|||||||||||||||||||||||
Sbjct  439  TCTGTTCACCTCAGTGTGCATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAATAG  512

Query  510  AAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAAC  583
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||.||||
Sbjct  513  AAATCTGACAGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAAC  586

Query  584  GCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTAC  657
            |||||||.||||||||.||||||||.|||||.||..||||.||||||||||||||.||.||.||.|||||||||
Sbjct  587  GCCGGATCCTCATCATCTGCAGCAAGCTCAGTACATTGACGGCCTGCATCCACGGCTCAGCTGCCATGCTCTAC  660

Query  658  CCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCC  731
            ||.||||||||||||||.|||||||||||.||||||||.||.||||||||||||||||||||||||||||||||
Sbjct  661  CCTATGTACTGGCAGCATGTGTACATCCCTGTGCTGCCCCCACATCTGCTGGACTACTGCTGTGCTCCCATGCC  734

Query  732  CTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGA  805
            ||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||.||||||.|||
Sbjct  735  CTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAGGTCAGGAACATGGCCCTCGATGATGTTGTGATCTTGA  808

Query  806  ATGTGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTG  879
            |.||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||.||||||||.||||||
Sbjct  809  ACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTGATCTCCTCCCTG  882

Query  880  AAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGC  953
            ||||||||||||||.||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||||
Sbjct  883  AAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGC  956

Query  954  TTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCG  1027
            ||||||.||.||||||||.||.||.||||||||.|||||.||.||.||.|||||||||.|||||||||||||.|
Sbjct  957  TTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCAGAAGAACCCATCACTTTCAGTGAGGAAGCCTTTG  1030

Query 1028  TGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTT  1101
            |.||||||||||||||.||||||||||..||||||||.|||||.|||||||||.||||||||||||||||||||
Sbjct 1031  TATCCCACTACCGCTCTGGAGCCATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAGTTT  1104

Query 1102  ATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGG  1175
            ||.|||||.|||.||||.||||||||||||||.|||||||||||.|||||.|||||.|||||||||||||||||
Sbjct 1105  ATCGATGGCCGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGAAATCAACATGGG  1178

Query 1176  CGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGA  1249
            .|||||.||.||||||||.||||||||||||||||||||.|||||.|||.|||||||||||||.||.|||||||
Sbjct 1179  AGAGTATGCCGGCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCAGGAAAGGAAGTGGTGCGATTCTGA  1252

Query 1250  ATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGA  1323
            ||||||||||.||.|||||.||.||.|||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1253  ATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTTGCAAAAGATCATGCAAAAATGGGA  1326

Query 1324  ATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCA  1397
            |||||.||||||||||||||||||||||||||||||||..|.|||||.|||||.|...||.|..|||||||.|.
Sbjct 1327  ATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCC  1400

Query 1398  GCTGCCAAAGACTGCA--CCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAAT  1469
            .|||||||||||  ||  ||.|||||||.||..|||.||.|||||||||..||.||||||||||||.|.|||||
Sbjct 1401  ACTGCCAAAGAC--CATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAAT  1472

Query 1470  CACAGTCCACTTTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGG  1543
            |||||||||||||||.|||||.||.||.||||||||||||||.||.|.||||||.||||||||||||.|.||||
Sbjct 1473  CACAGTCCACTTTGGGCAGGTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGG  1546

Query 1544  AAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCA--CATCCTAC  1615
            |||||.|||||||.|||||..|.|||||||||||    .|||..||.|.|||.|  |||.|..|  .|||..||
Sbjct 1547  AAGGCAGGAGGACATCTGTCTCAAGCCCTGAGCA----GCCACAGCCATACCGG--ACATTGAAAGAATCAGAC  1614

Query 1616  AG---AAAAG--CAT--TACCCATTTTGCGGCCA--------AGTTCCCGACGAGA-----GGCTGGACCT---  1666
            ||   |.|||  .||  .|||.|    |.|.|||        ||||     |||||     ||  ||||||   
Sbjct 1615  AGCGCAGAAGGTGATGAGACCGA----GAGTCCAGAGCAGCTAGTT-----CGAGAACCCTGG--GGACCTACC  1677

Query 1667  -CTTCATCACAT--------------------------------------------------------------  1677
             ||.|..|||.|                                                              
Sbjct 1678  CCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACC  1751

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1752  ACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGA  1825

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1826  GCTTTGATTACCAGAGACTGGACCTGTGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGCTTGCT  1899

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1900  CATCCATATACTAAGCTCTGGAGTCTGGGTCAGGACGACATGGCCATCCCCAGCAAGCCCTCCATAACCTCCCC  1973

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1974  TGAGAAGCCCTCAGCTCTGCTTGGTACTTCCCCAGCCCTGCCTCTCAGACCCCAGAACCAGGAGGGCATCCTGA  2047

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2048  GCCCCAGCATCAAGGAGGAGACTCCCATCCCAACTCCGGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAG  2121

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2122  ACCCCTGAGCTGGGCATCGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGCTGCTGGCGGCCCACT  2195

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2196  TGGTGACTTCTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCTCTGAGTCCAGCCCTCCTGTCAG  2269

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2270  GGCTGCTCCCCAGAGCTGTCCCCCAAGGTCCCACAGAACTTCTGCAGCCACCCAGCCCAGCCCCAGGAGCTGCA  2343

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2344  GGCACAGGCAGCGATGCCCTGCTCGCTCTCCTGGATCCACTTAACACAGCCTGGTCAGGCAGCACCATCCCATC  2417

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2418  ACATCCTGCTACCCCCAGTGCAGCCACCCCATTCATCCCTCAGCTCAGCTTCCCCCCAACAGTGACACCCACCC  2491

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2492  CTTTTGTACAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCT  2565

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2566  ACACCAGCCAGGCCTTTTGGGACCCCTCCAGCATCCCTAGGGCCAGCATATGCACCTAGCATTCTATTGTCTAG  2639

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2640  TTCTGGCTTCTATGCCCCTCACAGGTCTCAGCCCAACCTCTCTGCTCTCTCCATGCCCAACCTCTTTGGCCAGA  2713

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2714  TCCCAATGGGTGCCCACACTAGTCCCCTGCAGCCACTTGGCCCCCCAGCCGTTGCCCCCTCCAGGATCCGAACA  2787

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2788  TTGCCTCTGGCCCGCTCAAGTGCCAGGGCTGCTGAGGCCAAGCAGGGGTTGGCCCTGAGGCCTGGTGAATCCCC  2861

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2862  ACTGTTGCCTCCCAGACCGCCCCAGAGCCTACAGCCAACCCCGCAGCCCTCTGTTCCTACACAGGCCAGAGACC  2935

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2936  CCTTTGAGGATTTGCTGCGAAAAACCAAGCAAGATGTGAGCCCAAGCCCAGCCCCGGCCCTGGCCCCAGCCTCC  3009

Query 1678  ------------------------------------------  1677
                                                      
Sbjct 3010  ACCTCCGTGGAGCAGCTCCGCAGACAGTGGGAGACCTTTGAG  3051

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