Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
XM_006498007.3
Aligned Length:
3067
Identities:
1279
Gaps:
1625

Alignment

Query    1  ATGGGCTCCAGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGG  74
                                                          ||||.||||||||.|||||.||||||||
Sbjct    1  ----------------------------------------------ATGTGGAAGTGGCTTATCCTAGGACAGG  28

Query   75  TGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTT  148
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||                  
Sbjct   29  TGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCAGAGGACTACAGTGACC------------------  84

Query  149  TGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTG  222
                                                                                      
Sbjct   85  --------------------------------------------------------------------------  84

Query  223  CTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTAT  296
                                                                                      
Sbjct   85  --------------------------------------------------------------------------  84

Query  297  CTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGAC  370
                |||||.||||||||||||||||||||.||||||||.|||||||||.||||||||||||||||.|||.|||
Sbjct   85  ----AGCTACCTCCCCTGGTTCGAGGTATTCTATAAGCTCCTTAACATCTTGGCAGATTACACGACGAAACGAC  154

Query  371  AGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCAT  444
            ||||||.||||||||||||.|||||||||||||||||||.|||||||||||||||.||.|||||||||||.||.
Sbjct  155  AGGAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATCCCTGATCCTGGAGTGTCTGTTCAC  228

Query  445  CTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGAC  518
            |||||.|||||||||||.||.|||||||||||||.||||||.||||||||||||||||||||||||||||||||
Sbjct  229  CTCAGTGTGCATTCTTACTTCACTGTGCCTGATAGCAGAGAGCTTCCCAGCATACCTGAGAATAGAAATCTGAC  302

Query  519  AGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATAC  592
            ||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||.|||||||||||.|
Sbjct  303  AGAATATTTTGTGGCTGTGGATGTGAACAACATGTTGCATCTGTACGCCAGCATGCTGTATGAACGCCGGATCC  376

Query  593  TCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTAC  666
            |||||||.||||||||.|||||.||..||||.||||||||||||||.||.||.||.|||||||||||.||||||
Sbjct  377  TCATCATCTGCAGCAAGCTCAGTACATTGACGGCCTGCATCCACGGCTCAGCTGCCATGCTCTACCCTATGTAC  450

Query  667  TGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCAT  740
            ||||||||.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  451  TGGCAGCATGTGTACATCCCTGTGCTGCCCCCACATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCAT  524

Query  741  AGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACA  814
            |||||||||||||||||||||||||||.|||||.|||||||||||.||||||||.||||||.||||.|||||||
Sbjct  525  AGGAATCCATTTAAGTTTAATGGAGAAGGTCAGGAACATGGCCCTCGATGATGTTGTGATCTTGAACGTGGACA  598

Query  815  CCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGG  888
            |||||||||||||||||||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||||||
Sbjct  599  CCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTGATCTCCTCCCTGAAGAACAGG  672

Query  889  CTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGG  962
            |||||.||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||
Sbjct  673  CTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGG  746

Query  963  TAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACT  1036
            .||||||||.||.||.||||||||.|||||.||.||.||.|||||||||.|||||||||||||.||.|||||||
Sbjct  747  CAGCTACCGGAATGCACTGAAAATTGAGCCAGAAGAACCCATCACTTTCAGTGAGGAAGCCTTTGTATCCCACT  820

Query 1037  ACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGT  1110
            |||||||.||||||||||..||||||||.|||||.|||||||||.||||||||||||||||||||||.|||||.
Sbjct  821  ACCGCTCTGGAGCCATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAGTTTATCGATGGC  894

Query 1111  CGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGC  1184
            |||.||||.||||||||||||||.|||||||||||.|||||.|||||.|||||||||||||||||.|||||.||
Sbjct  895  CGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGAAATCAACATGGGAGAGTATGC  968

Query 1185  TGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAA  1258
            .||||||||.||||||||||||||||||||.|||||.|||.|||||||||||||.||.||||||||||||||||
Sbjct  969  CGGCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCAGGAAAGGAAGTGGTGCGATTCTGAATACTGTAA  1042

Query 1259  AGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAG  1332
            |.||.|||||.||.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct 1043  AAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTTGCAAAAGATCATGCAAAAATGGGAATAAAGGAG  1116

Query 1333  GTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAA  1406
            |||||||||||||||||||||||||||||..|.|||||.|||||.|...||.|..|||||||.|..||||||||
Sbjct 1117  GTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAA  1190

Query 1407  GACTGCA--CCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCA  1478
            |||  ||  ||.|||||||.||..|||.||.|||||||||..||.||||||||||||.|.||||||||||||||
Sbjct 1191  GAC--CATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCA  1262

Query 1479  CTTTGGACAGGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGA  1552
            ||||||.|||||.||.||.||||||||||||||.||.|.||||||.||||||||||||.|.|||||||||.|||
Sbjct 1263  CTTTGGGCAGGTACGGCCTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGA  1336

Query 1553  GGACGTCTGTGCCGAGCCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCA--CATCCTACAG---AAAA  1621
            ||||.|||||..|.|||||||||||    .|||..||.|.|||.|  |||.|..|  .|||..||||   |.||
Sbjct 1337  GGACATCTGTCTCAAGCCCTGAGCA----GCCACAGCCATACCGG--ACATTGAAAGAATCAGACAGCGCAGAA  1404

Query 1622  G--CAT--TACCCATTTTGCGGCCA--------AGTTCCCGACGAGA-----GGCTGGACCT----CTTCATCA  1674
            |  .||  .|||.|    |.|.|||        ||||     |||||     ||  ||||||    ||.|..||
Sbjct 1405  GGTGATGAGACCGA----GAGTCCAGAGCAGCTAGTT-----CGAGAACCCTGG--GGACCTACCCCTGCTCCA  1467

Query 1675  CAT-----------------------------------------------------------------------  1677
            |.|                                                                       
Sbjct 1468  CCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCTAGACGTGGAGGCACCACTGCAGCC  1541

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1542  GCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGCGGGAACAGCCAGGGAGCTTTGATT  1615

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1616  ACCAGAGACTGGACCTGTGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCAGCCTTGAAGCTTGCTCATCCATAT  1689

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1690  ACTAAGCTCTGGAGTCTGGGTCAGGACGACATGGCCATCCCCAGCAAGCCCTCCATAACCTCCCCTGAGAAGCC  1763

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1764  CTCAGCTCTGCTTGGTACTTCCCCAGCCCTGCCTCTCAGACCCCAGAACCAGGAGGGCATCCTGAGCCCCAGCA  1837

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1838  TCAAGGAGGAGACTCCCATCCCAACTCCGGGCAGCATCACCATTCCCAGGCCACAAGGCAGAAAGACCCCTGAG  1911

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1912  CTGGGCATCGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGCTGCTGGCGGCCCACTTGGTGACTT  1985

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1986  CTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCTCTGAGTCCAGCCCTCCTGTCAGGGCTGCTCC  2059

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2060  CCAGAGCTGTCCCCCAAGGTCCCACAGAACTTCTGCAGCCACCCAGCCCAGCCCCAGGAGCTGCAGGCACAGGC  2133

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2134  AGCGATGCCCTGCTCGCTCTCCTGGATCCACTTAACACAGCCTGGTCAGGCAGCACCATCCCATCACATCCTGC  2207

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2208  TACCCCCAGTGCAGCCACCCCATTCATCCCTCAGCTCAGCTTCCCCCCAACAGTGACACCCACCCCTTTTGTAC  2281

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2282  AGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCCATGCCCCTGAGCTCTACACCAGCC  2355

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2356  AGGCCTTTTGGGACCCCTCCAGCATCCCTAGGGCCAGCATATGCACCTAGCATTCTATTGTCTAGTTCTGGCTT  2429

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2430  CTATGCCCCTCACAGGTCTCAGCCCAACCTCTCTGCTCTCTCCATGCCCAACCTCTTTGGCCAGATCCCAATGG  2503

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2504  GTGCCCACACTAGTCCCCTGCAGCCACTTGGCCCCCCAGCCGTTGCCCCCTCCAGGATCCGAACATTGCCTCTG  2577

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2578  GCCCGCTCAAGTGCCAGGGCTGCTGAGGCCAAGCAGGGGTTGGCCCTGAGGCCTGGTGAATCCCCACTGTTGCC  2651

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2652  TCCCAGACCGCCCCAGAGCCTACAGCCAACCCCGCAGCCCTCTGTTCCTACACAGGCCAGAGACCCCTTTGAGG  2725

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2726  ATTTGCTGCGAAAAACCAAGCAAGATGTGAGCCCAAGCCCAGCCCCGGCCCTGGCCCCAGCCTCCACCTCCGTG  2799

Query 1678  ---------------------------------  1677
                                             
Sbjct 2800  GAGCAGCTCCGCAGACAGTGGGAGACCTTTGAG  2832

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