Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
XM_006498008.3
Aligned Length:
3239
Identities:
781
Gaps:
2344

Alignment

Query    1  ATGGGCTCCAGGATCAAGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTAT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGAC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCAT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGAC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATAC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTAC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  TGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCAT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACA  814
                                                 ||||||||.||||||||.||||||.||||.|||||||
Sbjct    1  -------------------------------------ATGGCCCTCGATGATGTTGTGATCTTGAACGTGGACA  37

Query  815  CCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGG  888
            |||||||||||||||||||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||||||
Sbjct   38  CCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTGATCTCCTCCCTGAAGAACAGG  111

Query  889  CTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGG  962
            |||||.||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||||||||||.||
Sbjct  112  CTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGG  185

Query  963  TAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACT  1036
            .||||||||.||.||.||||||||.|||||.||.||.||.|||||||||.|||||||||||||.||.|||||||
Sbjct  186  CAGCTACCGGAATGCACTGAAAATTGAGCCAGAAGAACCCATCACTTTCAGTGAGGAAGCCTTTGTATCCCACT  259

Query 1037  ACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGT  1110
            |||||||.||||||||||..||||||||.|||||.|||||||||.||||||||||||||||||||||.|||||.
Sbjct  260  ACCGCTCTGGAGCCATGAAACAGTTCCTACAGAATGCCACACAGTTGCAGCTCTTCAAGCAGTTTATCGATGGC  333

Query 1111  CGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGC  1184
            |||.||||.||||||||||||||.|||||||||||.|||||.|||||.|||||||||||||||||.|||||.||
Sbjct  334  CGACTAGACCTTCTCAATTCCGGTGAAGGTTTCAGCGATGTCTTTGAGGAGGAAATCAACATGGGAGAGTATGC  407

Query 1185  TGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAA  1258
            .||||||||.||||||||||||||||||||.|||||.|||.|||||||||||||.||.||||||||||||||||
Sbjct  408  CGGCAGTGATAAACTGTACCATCAGTGGCTGTCCACAGTCAGGAAAGGAAGTGGTGCGATTCTGAATACTGTAA  481

Query 1259  AGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAG  1332
            |.||.|||||.||.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct  482  AAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTTGCAAAAGATCATGCAAAAATGGGAATAAAGGAG  555

Query 1333  GTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAA  1406
            |||||||||||||||||||||||||||||..|.|||||.|||||.|...||.|..|||||||.|..||||||||
Sbjct  556  GTGAAAAACCGCTTGAAGCAAAAGGACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAA  629

Query 1407  GACTGCA--CCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCA  1478
            |||  ||  ||.|||||||.||..|||.||.|||||||||..||.||||||||||||.|.||||||||||||||
Sbjct  630  GAC--CATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCA  701

Query 1479  CTTTGGACAG---------------------------------------------------------GTGCGCC  1495
            ||||||.|||                                                         ||.||.|
Sbjct  702  CTTTGGGCAGCAACAAAGACTTCATCCCACTCGGCCGCCGCCTCCCAAGATCCAGCGCTCAAGGCCCGTACGGC  775

Query 1496  CACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGC  1569
            |.||||||||||||||.||.|.||||||.||||||||||||.|.|||||||||.|||||||.|||||..|.|||
Sbjct  776  CTCCTCGTCCACATGTCGTCAGGAGACCCAAGAGCAACATCACTGTGGAAGGCAGGAGGACATCTGTCTCAAGC  849

Query 1570  CCTGAGCA------AAACACCATTGCAACACCA-GCT--------------ACACTCCAC--AT--------CC  1612
            ||||||||      ||| .||.||||.||||.| |||              |.|||||.|  ||        ||
Sbjct  850  CCTGAGCACCTGGTAAA-GCCCTTGCGACACTATGCTGTCTTCCTCTCTGAAGACTCCTCTGATGAGGAATGCC  922

Query 1613  TAC----AGA-----------------------AAAGCATT-----------ACCCATTTTG--CGGCCA-AG-  1644
            .||    |||                       |||||.||           .|||  ||||  .||||| || 
Sbjct  923  GACGGGAAGAGGCCCCCAGCACTGGCTTCACTGAAAGCCTTCTCTTCTCTGCTCCC--TTTGAATGGCCACAGC  994

Query 1645  --TTCCCGA-------------------------------------CGAGAG---------GCT----------  1660
              |.||.||                                     ||||||         |||          
Sbjct  995  CATACCGGACATTGAAAGAATCAGACAGCGCAGAAGGTGATGAGACCGAGAGTCCAGAGCAGCTAGTTCGAGAA  1068

Query 1661  ------GGACCT----CTTCATCACAT-----------------------------------------------  1677
                  ||||||    ||.|..|||.|                                               
Sbjct 1069  CCCTGGGGACCTACCCCTGCTCCACCTGACCGAGCTGCCAGCATTGACCTTCTAGAAGATGTCTTCAGCAGCCT  1142

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1143  AGACGTGGAGGCACCACTGCAGCCGCTGGGCCAAGCCAAGAGCCTGGAGGATCTCCGGGCCCCCAAAGACTTGC  1216

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1217  GGGAACAGCCAGGGAGCTTTGATTACCAGAGACTGGACCTGTGCAGAAGTGAGAGGGGCCTTAGCATGGCTGCA  1290

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1291  GCCTTGAAGCTTGCTCATCCATATACTAAGCTCTGGAGTCTGGGTCAGGACGACATGGCCATCCCCAGCAAGCC  1364

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1365  CTCCATAACCTCCCCTGAGAAGCCCTCAGCTCTGCTTGGTACTTCCCCAGCCCTGCCTCTCAGACCCCAGAACC  1438

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1439  AGGAGGGCATCCTGAGCCCCAGCATCAAGGAGGAGACTCCCATCCCAACTCCGGGCAGCATCACCATTCCCAGG  1512

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1513  CCACAAGGCAGAAAGACCCCTGAGCTGGGCATCGTGCCTCCACCACCCACTGCCCGGCCAGCCAAGCTCCAGGC  1586

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1587  TGCTGGCGGCCCACTTGGTGACTTCTCTTCAGAGCCACTGCAGATGGACCGGGAAAGACAAGCCGCTCTGAGTC  1660

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1661  CAGCCCTCCTGTCAGGGCTGCTCCCCAGAGCTGTCCCCCAAGGTCCCACAGAACTTCTGCAGCCACCCAGCCCA  1734

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1735  GCCCCAGGAGCTGCAGGCACAGGCAGCGATGCCCTGCTCGCTCTCCTGGATCCACTTAACACAGCCTGGTCAGG  1808

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1809  CAGCACCATCCCATCACATCCTGCTACCCCCAGTGCAGCCACCCCATTCATCCCTCAGCTCAGCTTCCCCCCAA  1882

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1883  CAGTGACACCCACCCCTTTTGTACAGACACCACTCAATCCCTTTGTCCCATCTGTGCCAGTAGTACCACCCTCC  1956

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1957  ATGCCCCTGAGCTCTACACCAGCCAGGCCTTTTGGGACCCCTCCAGCATCCCTAGGGCCAGCATATGCACCTAG  2030

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2031  CATTCTATTGTCTAGTTCTGGCTTCTATGCCCCTCACAGGTCTCAGCCCAACCTCTCTGCTCTCTCCATGCCCA  2104

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2105  ACCTCTTTGGCCAGATCCCAATGGGTGCCCACACTAGTCCCCTGCAGCCACTTGGCCCCCCAGCCGTTGCCCCC  2178

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2179  TCCAGGATCCGAACATTGCCTCTGGCCCGCTCAAGTGCCAGGGCTGCTGAGGCCAAGCAGGGGTTGGCCCTGAG  2252

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2253  GCCTGGTGAATCCCCACTGTTGCCTCCCAGACCGCCCCAGAGCCTACAGCCAACCCCGCAGCCCTCTGTTCCTA  2326

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2327  CACAGGCCAGAGACCCCTTTGAGGATTTGCTGCGAAAAACCAAGCAAGATGTGAGCCCAAGCCCAGCCCCGGCC  2400

Query 1678  ---------------------------------------------------------  1677
                                                                     
Sbjct 2401  CTGGCCCCAGCCTCCACCTCCGTGGAGCAGCTCCGCAGACAGTGGGAGACCTTTGAG  2457

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