Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
XM_011518882.3
Aligned Length:
3274
Identities:
1638
Gaps:
1616

Alignment

Query    1  -----ATGGGCTCCAG----------------GATCAA------------------------GCAGAATCCAGA  29
                 |||.|||.|||                |.|.||                        ||||||||||||
Sbjct    1  ATGAGATGCGCTGCAGCAGCCTTGAGACATCTGCTGAATGAAACTAGAAAAGTTTGCTTATGGCAGAATCCAGA  74

Query   30  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGA  148

Query  104  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTACAGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTG  222

Query  178  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATT  296

Query  252  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTTCTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTAT  370

Query  326  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAAAAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAA  444

Query  400  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCTGTCCATCTCAGCGTGCATTCTTATTTTACTGTGCC  518

Query  474  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAATCTGACAGAATATTTTGTGGCTGTGGATGTTAACA  592

Query  548  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCCGGATACTCATCATTTGCAGCAAACTCAGCACTCTG  666

Query  622  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCCATGTACTGGCAGCACGTGTACATCCCCGTGCTGCC  740

Query  696  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAGAAAG  814

Query  770  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGAC  888

Query  844  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGA  962

Query  918  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGC  1036

Query  992  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGTCCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTG  1110

Query 1066  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATTGATGGTCGATTAGATCTTCTCAATTCCGGCGAAGG  1184

Query 1140  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGAGTACGCTGGCAGTGACAAACTGTACCATCAGTGGC  1258

Query 1214  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATACTGTAAAGACCAAAGCAAATCCGGCCATGAAGACT  1332

Query 1288  GTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACAT  1361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACAT  1406

Query 1362  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCTGCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCA  1480

Query 1436  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAG---------------------  1488
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1481  AGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAGTCCACTTTGGACAGCTGCAGAGACTGCGTCCCACC  1554

Query 1489  ---------------------------------GTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1529
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CGACCGCCTCCCAAGATACAGCGCTCGAGGCCCGTGCGCCCACCTCGTCCACATGTTGTTAAGAGACCAAAGAG  1628

Query 1530  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCA------AAACACCATTGCAACACCA-  1596
            ||||||||||||||||||||||||||||||||||||||||||||||||      ||| .||.||||.||||.| 
Sbjct 1629  CAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAGCCCTGAGCACCTGGTAAA-GCCCTTGCGACACTAT  1701

Query 1597  GC-----TACACTCC----ACATCCTACAGA-----AAAGCATTACCCATTTTGCGGCCA-AGTTCCCGA----  1651
            ||     |.|.||||    || |||| |.||     ||.|      |||    ||||..| ||..|||||    
Sbjct 1702  GCGGTCTTCCTCTCCGAAGAC-TCCT-CTGATGATGAATG------CCA----GCGGGAAGAGGGCCCGAGCTC  1763

Query 1652  ---------CGAGAGGCTGGACCTCTTCATCAC------------AT---------------------------  1677
                     ||||||      |.|.|||.||.|            ||                           
Sbjct 1764  TGGCTTCACCGAGAG------CTTTTTCTTCTCCGCTCCCTTTGAATGGCCGCAGCCGTATCGGACACTCAGGG  1831

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1832  AGTCAGACAGCGCGGAAGGCGACGAGGCAGAGAGTCCAGAGCAGCAAGTGCGGAAGTCCACAGGCCCTGTCCCA  1905

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1906  GCTCCCCCTGACCGGGCTGCCAGCATCGACCTTCTGGAAGACGTCTTCAGCAACCTGGACATGGAGGCCGCACT  1979

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 1980  GCAGCCACTGGGCCAGGCCAAGAGCTTAGAGGACCTTCGTGCCCCCAAAGACCTGAGGGAGCAGCCAGGGACCT  2053

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2054  TTGACTATCAGAGGCTGGATCTGGGCGGGAGTGAGAGGAGCCGCGGGGTGACAGTGGCCTTGAAGCTTACCCAC  2127

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2128  CCGTACAACAAGCTCTGGAGCCTGGGCCAGGACGACATGGCCATCCCCAGCAAGCCCCCAGCTGCCTCCCCTGA  2201

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2202  GAAGCCCTCAGCCCTGCTCGGAAACTCCCTGGCCCTGCCTCGAAGGCCCCAGAACCGGGACAGCATCCTGAACC  2275

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2276  CCAGTGACAAGGAGGAGGTGCCCACCCCTACTCTGGGCAGCATCACCATCCCCCGGCCCCAAGGCAGGAAGACC  2349

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2350  CCAGAGCTGGGCATCGTGCCTCCACCGCCCATTCCCCGCCCGGCCAAGCTCCAGGCTGCCGGCGCCGCACTTGG  2423

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2424  TGACGTCTCAGAGCGGCTGCAGACGGATCGGGACAGGCGAGCTGCCCTGAGTCCAGGGCTCCTGCCTGGTGTTG  2497

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2498  TCCCCCAAGGCCCCACTGAACTGCTCCAGCCGCTCAGCCCTGGCCCCGGGGCTGCAGGCACGAGCAGTGACGCC  2571

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2572  CTGCTCGCCCTCCTGGACCCGCTCAGCACAGCCTGGTCAGGCAGCACCCTCCCGTCACGCCCCGCCACCCCGAA  2645

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2646  TGTAGCCACCCCATTCACCCCCCAATTCAGCTTCCCCCCTGCAGGGACACCCACCCCATTCCCACAGCCACCAC  2719

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2720  TCAACCCCTTTGTCCCATCCATGCCAGCAGCCCCACCCACCCTGCCCCTGGTCTCCACACCAGCCGGGCCTTTC  2793

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2794  GGGGCCCCTCCAGCTTCCCTGGGGCCGGCTTTTGCGTCCGGCCTCCTGCTGTCCAGTGCTGGCTTCTGTGCCCC  2867

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2868  TCACAGGTCTCAGCCCAACCTCTCCGCCCTCTCCATGCCCAACCTCTTTGGCCAGATGCCCATGGGCACCCACA  2941

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2942  CGAGCCCCCTACAGCCGCTGGGTCCCCCAGCAGTTGCCCCGTCGAGGATCCGAACGTTGCCCCTGGCCCGCTCA  3015

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3016  AGTGCCAGGGCTGCTGAGACCAAGCAGGGGCTGGCCCTGAGGCCTGGAGACCCCCCGCTTCTGCCTCCCAGGCC  3089

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3090  CCCTCAAGGCCTGGAGCCAACACTGCAGCCCTCTGCTCCTCAACAGGCCAGAGACCCCTTTGAGGATTTGTTAC  3163

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 3164  AGAAAACCAAGCAAGACGTGAGCCCGAGTCCGGCCCTGGCCCCGGCCCCAGACTCGGTGGAGCAGCTCAGGAAG  3237

Query 1678  ------------------  1677
                              
Sbjct 3238  CAGTGGGAGACCTTCGAG  3255

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