Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03844
Subject:
XR_929829.2
Aligned Length:
2896
Identities:
1673
Gaps:
1219

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCGGAACAGCTGAGATTACAGGGCGGCCCCCTCCCCGGGTTTACGGAGAGCCCCTGAAAATGGTCCTTCAACTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGGGAAGGGGAGTGGGAAAGCCCCGGAAGCACCTCCCCATGTTTGGGCATGTTTGGGGCGCCCCTGAAAGTTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCAGGTCCGGAGAGGTTGCAGCCTGGCCGCTTGAGGCCTGCGGCCCCCACAGAAGTCGCGTGAGGTTCTTAGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGGGGCCGCTCATGGTGTGGCCACCTAAGGTGTGGATGGCCGGGGAGGAAGGCCTGTCTCTCTATTTCCCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTCTTATCTGTGAAAATCTCCACGCAGCAAGGTCCAAAGGCTGTGAAGGAGGATACCTCTGTGTTGTAACCGAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACCTGCTCTTGATAATCGTTGGAAAGGCTTTGTAACTCAATCTGGCGAATTCCCTCACTCATTCATTCACCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGTTCCCGGTGGAGGGTTAGCTTTCCGGGGAAATTGTTGATACATGTAACTTCAGAATCCACTGAAACATTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGCTGTCCTTGTAGACTTAGAAGTTGACTTTGGAAAGTGCAACTCTTAAGCGGTCCAATTTGGGTGTGTGGCTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCGACTCTATCTCCCCTCCCAGCCAGGTCCTCTTGTGGCCTCTCCCTTCCTCTGCCCCAGAACTGGAGATGTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATCTCTAATTACTAACAAATGTTCACTTTTTCCTCTGTGACTAATAGAATTGTTTAAGGGCATTAAAAAGCAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGTTGACAGCATAGGCTTTTCTGTAAAACAACTTTCCTAGGACACTTTAAACCCTCTTACAAGAAAGTTTGTGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AATGTGTTTATTTCAGCATTTTGAGAATTGTACTAGGGAAGTTTGAAAGGAGAAGGGCCTTAAGGGTGAAACTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATAATTATTCAAACATTGCATCTCATGTCCAGGTGATGCCCGTGCAGTGTGACCCTTGCCCAGCCTTGCAGTCC  962

Query    1  ----------------------------------------ATGGGCTCCAG----------------GATCAA-  17
                                                    |||.|||.|||                |.|.|| 
Sbjct  963  CCCGTGTGGTTAGGCTTCTCATTTACAAAATATGTATGAGATGCGCTGCAGCAGCCTTGAGACATCTGCTGAAT  1036

Query   18  -----------------------GCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAG  68
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAAACTAGAAAAGTTTGCTTATGGCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAG  1110

Query   69  GACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTAC  142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GACAGGTGGCACTCTTTCAGATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAGGAAGTTCTAC  1184

Query  143  AGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACA  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGACTTTGACCAAGTTTTGTTTCCCCTTCTATGTGGACAGCCTCACAGTTAGCCAAGTTGGCCAGAACTTCACA  1258

Query  217  TTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTT  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCGAAGAGCTGCTT  1332

Query  291  CTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAA  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTGTATCTTAAGCTATCTCCCCTGGTTCGAGGTATTTTATAAGCTGCTTAACATCCTGGCAGATTACACGACAA  1406

Query  365  AAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCT  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AAAGACAGGAAAATCAGTGGAATGAGCTTCTTGAAACTCTGCACAAACTTCCCATCCCTGACCCAGGAGTGTCT  1480

Query  439  GTCCATCTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAA  512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GTCCATCTCAGCGTGCATTCTTATTTTACTGTGCCTGATACCAGAGAACTTCCCAGCATACCTGAGAATAGAAA  1554

Query  513  TCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCC  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TCTGACAGAATATTTTGTGGCTGTGGATGTTAACAACATGTTGCATCTGTACGCCAGTATGCTGTACGAACGCC  1628

Query  587  GGATACTCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCC  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGATACTCATCATTTGCAGCAAACTCAGCACTCTGACTGCCTGCATCCACGGGTCTGCGGCGATGCTCTACCCC  1702

Query  661  ATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTA  734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATGTACTGGCAGCACGTGTACATCCCCGTGCTGCCGCCGCATCTGCTGGACTACTGCTGTGCTCCCATGCCCTA  1776

Query  735  CCTCATAGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATG  808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CCTCATAGGAATCCATTTAAGTTTAATGGAGAAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATG  1850

Query  809  TGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAG  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTGATCTCTTCCCTGAAG  1924

Query  883  AACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTT  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTT  1998

Query  957  CTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGT  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCGGAGGAGCCGATCACTTTCTGTGAGGAAGCCTTCGTGT  2072

Query 1031  CCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CCCACTACCGCTCCGGAGCCATGAGGCAGTTCCTGCAGAACGCCACACAGCTGCAGCTCTTCAAGCAGTTTATT  2146

Query 1105  GATGGTCGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GATGGTCGATTAGATCTTCTCAATTCCGGCGAAGGTTTCAGTGATGTTTTTGAAGAGGAAATCAACATGGGCGA  2220

Query 1179  GTACGCTGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATA  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GTACGCTGGCAGTGACAAACTGTACCATCAGTGGCTCTCCACTGTCCGGAAAGGAAGTGGAGCAATTCTGAATA  2294

Query 1253  CTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTGTAAAGACCAAAGCAAATCCGGCCATGAAGACTGTCTACAAGTTCGCAAAAGATCATGCAAAAATGGGAATA  2368

Query 1327  AAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCT  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AAAGAGGTGAAAAACCGCTTGAAGCAAAAGGACATTGCCGAGAATGGCTGCGCCCCCACCCCAGAAGAGCAGCT  2442

Query 1401  GCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAG  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GCCAAAGACTGCACCGTCCCCACTGGTGGAGGCCAAGGACCCCAAGCTCCGAGAAGACCGGCGGCCAATCACAG  2516

Query 1475  TCCACTTTGGACAG------------------------------------------------------GTGCGC  1494
            ||||||||||||||                                                      ||||||
Sbjct 2517  TCCACTTTGGACAGCTGCAGAGACTGCGTCCCACCCGACCGCCTCCCAAGATACAGCGCTCGAGGCCCGTGCGC  2590

Query 1495  CCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAG  1568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  CCACCTCGTCCACATGTTGTTAAGAGACCAAAGAGCAACATCGCAGTGGAAGGCCGGAGGACGTCTGTGCCGAG  2664

Query 1569  CCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTACCCATTTTGCGGCCA  1642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  CCCTGAGCAAAACACCATTGCAACACCAGCTACACTCCACATCCTACAGAAAAGCATTACCCATTTTGCGGCCA  2738

Query 1643  AGTTCCCGACGAGAGGCTGGACCTCTTCATCACAT---------------------------------------  1677
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 2739  AGTTCCCGACGAGAGGCTGGACCTCTTCATCACATTGACTTACGCCGTTGCTTTTCCAGACTGGGCAGAGGGGC  2812

Query 1678  --------------------------------------------------------------------------  1677
                                                                                      
Sbjct 2813  TGACTTCGCAGTGTGTGCCAAAGAGCCGGTGTCTGATAATCCCATTTTCCTGCTTATCACCTGAACTGTGCCGC  2886

Query 1678  ----------  1677
                      
Sbjct 2887  AGCCGTATCG  2896

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