Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04000
Subject:
NR_146196.2
Aligned Length:
3055
Identities:
1296
Gaps:
1759

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATCGCGCCCGCTCCGACGTGTCCAGGTCCGCGGCCCCGGGAGCTTGGCGCGGCCCGGCCTGGATGCGCTGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAGGGTGCAGGGGAGGGCACGGCGCCGCTTGCTTGGCCTGCGCACCCGGACCTAGAAGCCGGGACGAGCCGGG  148

Query    1  --------------------------------------------------ATGACTGAACTACAGCAAGATGTG  24
                                                              ||||||||||||||||||||||||
Sbjct  149  GCAGAGCCAGGCGCGCGGAAGTCTGAAGGTGCCCTCCAGACACGGCCCCGATGACTGAACTACAGCAAGATGTG  222

Query   25  GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAAGACACAAAGCCTGCGAAAGTGCTCGGGAAGAGGGAGAGCAAACTTGGCTCAGCCCACTCAGAGGCTGAGAA  296

Query   99  TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT  172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGTGTGGAGGAGAAAAAGAAAGCCTGCAGGTCGCCAACAGCCCAATCCCCTACCCCATCTGTGGAGGCGGACT  370

Query  173  CCCCAGACCAGAAGAAAATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAG  246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCAGACCAGAAGAAAATCATTAGCCTATGGTCAAAATCCAGTTTTGATGGTGCCTCTTTAGCAAGTGATAAG  444

Query  247  AACGACTGTAAAACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAA  320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AACGACTGTAAAACAGAAAGCAAAAATGACCCTAAGACTGAAAGAAAAAAGTCTTCATCTTCCAGCCAGTACAA  518

Query  321  GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG  394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGCCAATATGCACTTTCACAAGTTGTTTCTTAGTGTCCCAACGGAGGAACCACTGAAGCAAAGCTTTACCTGTG  592

Query  395  CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTCTACAGAAAGAAATACTATACCAAGGAAAGCTCTTTGTATCAGAAAACTGGATTTGTTTTCATTCCAAAGTC  666

Query  469  TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT  542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTTGGAAAAGACACAAAGATCTCTATTCCAGCTTTCTCGGTAACCCTAATAAAGAAAACCAAAACTGCTCTTCT  740

Query  543  AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA  616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTGCCAAACGCCCTGATCATAGCAACAGTCACAGACAGGTACATATTTGTCTCCTTACTCTCCAGAGATTCAA  814

Query  617  CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT  690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTTACAAACTACTAAAATCTGTGTGTGGACACTTAGAAAATACAAGTGTTGGTAACAGTCCCAATCCATCTTCT  888

Query  691  GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA  764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCTGAAAACAGTTTCCGAGCAGACCGCCCTTCATCTCTGCCTCTGGATTTCAATGATGAATTCTCAGATCTGGA  962

Query  765  TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA  838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGAGTGGTTCAACAAAGAAGGCAAGACATGGAAGGATATAGCAGTTCTGGTTCTCAAACTCCTGAATCTGAGA  1036

Query  839  ACTCTCGAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGG  912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACTCTCGAGATTTCCATGCGACAGAATCCCAAACAGTTCTGAATGTCTCCAAGGGAGAAGCAAAGCCAACTCGG  1110

Query  913  GCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGT  986
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GCAGATGCCCATGTGAACAGAGTACCTGAAGGAAAAGCCAAGAGTCTCCCTGTACAGGGTCTGTCAGAAACTGT  1184

Query  987  TGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTG  1060
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGGAATCTTACATAAAGTCAAGTCTCAGAAATGTCCGATGCTTCACCATATTCTTATATTCTATGCAATTGTTG  1258

Query 1061  TCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTA  1134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCTGTGCACTAATCATCTCGACCTTCTACATGAGATACAGAATTAATACTCTGGAGGAGCAGCTGGGGTTACTA  1332

Query 1135  ACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGT  1208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ACCTCCATTGTGGACACCCATAATACTGAACAGGCAGCACCATCTGGCCTGAGGTCACAAGTACAATTCAATGT  1406

Query 1209  GGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAA---------------------------  1255
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 1407  GGAGGTTCTCTGTCAAGAGCTTACAGCTAACATAGTGAAATTAGAAAAGTGATATTCTTTGGATTAGAAACACA  1480

Query 1256  --------------------------------------------------------------------------  1255
                                                                                      
Sbjct 1481  TGGGATCCTGCCGCCTTCTTTTGTGTTTCTTCCCACTCTCCCGCTGGGCCTGGCCGGGACACCACATTCTGTAA  1554

Query 1256  -------------------------------------------------AGATACAAAATAACTTACAGAAGTT  1280
                                                             |||||||||||||||||||||||||
Sbjct 1555  CCAGGGAACTGAAAACAGAAGAGCTTGTTCACAGCAGGCAAACAGCCTCAGATACAAAATAACTTACAGAAGTT  1628

Query 1281  GCTTGAGAATGGTGAC----------------------------------------------------------  1296
            ||||||||||||||||                                                          
Sbjct 1629  GCTTGAGAATGGTGACTGATCGACCAGATTGCTTGGGCCATCGGAATACCTCATGTTTCCCTTTGAAGAAGGTG  1702

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 1703  CTTCCTGAGGCGTTTTGTTTGAGTGCACCCTGCTGGTCAGAGGTGCAAGCAGATGAGAATCCAGACATTGCATG  1776

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 1777  TGGAGGTCTCCAGCTCAGGAAAGTGAGGAGGGAAATAATTTTGGTTCTTGTGCAATAAAAGTTGACCTTGACTC  1850

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 1851  TCTGAGGAAGATTTTGCTGCTTTTGCCTGAAGAAAACAGACCCATCTCTGGAGGTCTCAGGAAGGGCCCAGCGA  1924

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 1925  ACACACTCTCTTGGATAATTACCACGATGGCGTCAGCAAACACTCCACCCTGTGCCTTTTTAGTCCTTCCCGCC  1998

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 1999  CTCCTGCCTCTCCCTTACACCCCTCTTAACGACTTTCAAACTAAAGGATACATCATATACTGACAAACTCAATG  2072

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2073  TGGTCCTTTCAAGAATTAGCCATGAGTCTCAAAAAGGCAATAAATGGCTCTAAGTGGACAGGTTTGCTTCAAAC  2146

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2147  AAGTAACATCTACATTTTGTCTTTTTTTTTTCAGTTCTCCTGTTATGTTCTGGTTGAAATCACCTGTGTGTCTT  2220

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2221  AATTTCTCAATTCCTTTTTGGCAAGAATATCAAGCAAGGTGAATTTAACATTATGTTTATGTTTTGTTTTGTTG  2294

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2295  CTGTAACTAATAGTTAATTGGACTGATTCTTACCCAGCCCTGGTCAAGAATCTGTGAGGCATGTGACTGAAGTA  2368

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2369  CTAAATTAAACTTATTTTGAAACCAAACCTAATTTTTAAGCCAAAAGGTGTAATAGTGATTTAATACAGGATGA  2442

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2443  AAAACACTGAATTTTTAAGACTGTAGGTGGACTATGTTAGTAGTTTTCAAGCAGGATGTCTGTATTCAGCATTC  2516

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2517  AATAATGCTAAAATCCCTTTCAGCATGAAATTTGTATGTTTTTATCCTTTGCTGACTAAAATAAAATAACTGGT  2590

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2591  GGTTTGCTAACTATTTACCATATGGGTTGGCTGGTTTTTATTAATAATTGTTTAGGGTATCATAAGATCTGTAA  2664

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2665  GTACAAAGGATATTCTGTTTCTATCTGCAATGCATTTGATAATCATTTCTATGAAATGTATTTTATTTAATCAG  2738

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2739  ATAAGCTAATAAGCGAATTGGTTACATCGTTTGTATCTGTTGGCCTAGTGGACAGCTGTGCCTGGTGCACCTCT  2812

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2813  GGCTTTTAATAAATACTCATTGGTTGAAACACCCTGCTAACACTGTGTTTTGTCAGTTCGTAAATTCCTTTAAC  2886

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2887  CAAGACTTAACTATGCTTTTTAACTCTTTTTCCACCTGCCATCTACTACTACCAACTCACTTATACTTCCTTCC  2960

Query 1297  --------------------------------------------------------------------------  1296
                                                                                      
Sbjct 2961  TCCCAAGTAATCATTTCAAAACTAAAAAAGGATTTAAGTTCTTGGGTTACAACGGTTTAAAGGAAAGAAAATGA  3034

Query 1297  ---------------------  1296
                                 
Sbjct 3035  ACTTTGAAGTCAAAAAAAAAA  3055

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