Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04800
Subject:
NM_001321522.1
Aligned Length:
2977
Identities:
1654
Gaps:
1091

Alignment

Query    1  ATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGACGCTTGAC  74
                                                            |||||||||.|||||||.|..|||||
Sbjct    1  ------------------------------------------------ATGGCTCTTTCTCAGGGTCTATTGAC  26

Query   75  TTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACA  148
            .||||||||||||||.|||||.||||||..|||.||||||||.||||||.|||||||.||||||.||.||||||
Sbjct   27  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAAGAGTGGAAGTGCCTGGACCCTGCTCAGAGGACTCTATACA  100

Query  149  GGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGATAGCTCTTTAAAATCCATGAT---GGAGTTC  219
            |||..||||||.|||||||.||.||||||||||..|...||||||.|||||..||||.||||||   |||||||
Sbjct  101  GGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAAGGAGTTC  174

Query  220  TCATCAACCAGGCACA--GTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCAC  291
            ||||||||  .|||||  |.|.|||   |||||||||||||||||||||.||||||||||||.||.||||||||
Sbjct  175  TCATCAAC--AGCACAAGGCAATAC---AGAAGTGATCCACACAGGGACATTGCAAAGACATGAACGTCATCAC  243

Query  292  ATTGGAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAG  365
            |||||||||||||||||||..||||||.||||||||||||||.|.|||||||||||||||.||||||.||||||
Sbjct  244  ATTGGAGATTTTTGCTTCCAGGAAATGGAGAAAGATATTCATGATTTTGAGTTTCAGTGGAAAGAAGATGAAAG  317

Query  366  AAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATG  439
            ||||.||||||||||||||||||||.||||||||.|||||||.|||||||||.|||||..||||||.|||||||
Sbjct  318  AAATAGCCATGAAGCACCCATGACAGAAATCAAACAGTTGACGGGTAGTACAAACCGACATGATCAAAGGCATG  391

Query  440  CTGGAAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAG  513
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct  392  CTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAG  465

Query  514  ACTAAAGGGAAAATTAGTAACCAATTGGACAAGTCTAT---CGGTGCTTCCTCAGCTTCAGAATCCCAAAGAAT  584
            ||..|||||||||||.||||.|||.|.||.||||||||   |.|||||||.|..|.||||..||||||||||||
Sbjct  466  ACCGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAGTGCTTCGTTGGTTTCAACATCCCAAAGAAT  539

Query  585  TTCTTGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCAT---TCACACAAA  655
            |||||||||||..|||||.||.||||||||.||.||||||||.||||||||..|||||||||   |||||||||
Sbjct  540  TTCTTGTAGGCCTAAAACCCACATTTCTAAGAACTATGGGAATAATTTCCTGAATTCTTCATTACTCACACAAA  613

Query  656  TACAGGAAATATGCATGAGAGAAAAACCTTGCCAAAGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACTC  729
            ..||||||.||..|||||||||||||.|||.||||.||||||||.||||||||||||||||||||||||||.||
Sbjct  614  AGCAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTATAGCTCAGTC  687

Query  730  TTAAGGAGACACCACATAACCCATTCAAGAGAGAGAGAATATAAATGTGATGTATGTGGCAAGATCTTTAATCA  803
            |||||||.|||.||.||||.|||||.|.|||.||.|.||||||||||||||||.|||||||||.||||||||||
Sbjct  688  TTAAGGAAACATCAGATAATCCATTTAGGAGCGAAACAATATAAATGTGATGTGTGTGGCAAGGTCTTTAATCA  761

Query  804  GAAGCAATACATTGTATATCATCATAGATGTCACACTGGTGAGAAAACTTACAAGTGTAATGAGTGTGGGAAGA  877
            .||||.|||..|||.||.|||||.|||||||||||||||..|||||.||||||||||||||||.|||||.||||
Sbjct  762  AAAGCGATATCTTGCATGTCATCGTAGATGTCACACTGGCAAGAAACCTTACAAGTGTAATGATTGTGGCAAGA  835

Query  878  CCTTCACTCAGATGTCATCCCTTGTATGCCATCGTAGACTTCATACTGGAGAGAAAC-----------------  934
            ||||||.||||..||.|.|||||..||||||||.|||||||||||||||||||||||                 
Sbjct  836  CCTTCAGTCAGGAGTTAACCCTTACATGCCATCATAGACTTCATACTGGAGAGAAACATTACAAGTGCAGTGAG  909

Query  935  -------------------------------------------------------------------CTTACAA  941
                                                                               |||||||
Sbjct  910  TGTGGCAAGACCTTCAGTCGAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAATCTTACAA  983

Query  942  GTGTAATGAGTGTGGCAAGACCTTCAGTGA--------------------------------------------  971
            |||||||||.||||||||||||||||||.|                                            
Sbjct  984  GTGTAATGAATGTGGCAAGACCTTCAGTCAAACGTCATACCTTGTGTACCATCGTAGACTTCATACTGGAGAGA  1057

Query  972  --------------------------------------------------------------------------  971
                                                                                      
Sbjct 1058  AACCTTACAAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGAAAATTCAT  1131

Query  972  --------------------------------------------------GAAGTCATCCCTTAGATGCCATCG  995
                                                              ||||||||||||||.|.|||||||
Sbjct 1132  ACTGGAGAGAAACCTTACAAGTGTAATGAATGCAGCAGGACCTTTAGTCGGAAGTCATCCCTTACACGCCATCG  1205

Query  996  TAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACTTTTGGTCGAAAT-TCAGCCCTT  1068
            |||||||||||||||||||||||||||.|||||||||||.|||||||||||.||..||| |.|| |||.|||||
Sbjct 1206  TAGACTTCATACTGGAGAGAAACCTTATAAGTGTAATGATTGTGGCAAGACCTTCAGTC-AGATGTCATCCCTT  1278

Query 1069  GT------------AATTCATA----------------------------------------------------  1078
            ||            |.||||||                                                    
Sbjct 1279  GTATACCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGATGAAGCTTTCAGTTTCAA  1352

Query 1079  -------------------AGG-CAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCT  1132
                               ||| .||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1353  ATCGAACCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGATTGTGGCAAGACCT  1426

Query 1133  TCAGTCAGAAATCATCCCTTCAATGCCATCATATACTTCACACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1206
            |||||||||.||||||||||..||.|||||.||.||||||.|||||||||||||||||||||||||||||||||
Sbjct 1427  TCAGTCAGACATCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGT  1500

Query 1207  GACAATGTTTACATTCGCAGATCACACCTTGAAAGACATAGGAAGATTCATACTGGAGAG--------------  1266
            ||..|.|.||.||.|..||.||||.||||||||||||||||||..|||||||||||||||              
Sbjct 1501  GATGAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGATAATTCATACTGGAGAGAAACTTTACAAGTG  1574

Query 1267  --------------------------GGA--TCA----------------------------------------  1272
                                      |||  |||                                        
Sbjct 1575  TAATGAATGTGGCAAGACCTTTAGTCGGAAGTCATCCCTTACACGCCATTGTAGACTTCATACTGGAGAGAAAC  1648

Query 1273  --------------------------------------------------------------------------  1272
                                                                                      
Sbjct 1649  CTTACCAGTGTAATGAGTGTGGCAAAGCCTTTCGTGGGCAGTCAGCACTTATTTACCATCAAGCAATCCATGGT  1722

Query 1273  ------------TACAAATGTAAGGTTTGTGACAAGGTTTT--------------CC-------------GGAG  1307
                        |||||||||||.|.||||.||.|.||.||              ||             ||||
Sbjct 1723  ATAGGGAAACTTTACAAATGTAATGATTGTCACCAAGTCTTTAGTAATGCTACAACCATTGCAAATCATTGGAG  1796

Query 1308  ---------TGA------------------------------------------------TTCATACCTTGCA-  1323
                     |||                                                ||||||||||||| 
Sbjct 1797  AATCCATAATGAAGAGAGATCGTACAAGTGTAATAGATGTGGCAAATTTTTCAGACATCGTTCATACCTTGCAG  1870

Query 1324  ---------GAAC---------------------------------------------------------ATCA  1331
                     ||||                                                         ||||
Sbjct 1871  TTCATTGGCGAACTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTGATGAAGCTTTCAGTTTCAAATCA  1944

Query 1332  -----------------GAGAGTTCATACTGGAGAGAAACCATACAAGTGTAATAAATGTGGCAGGAGTTTCAG  1388
                             ||||.|||||||||||||||||||.||||.|||||||.|||||||||.||..||.||
Sbjct 1945  AACCTTCAAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAGGTGTAATGAATGTGGCAAGACCTTTAG  2018

Query 1389  TCGGAAGTCATCCCTTCAATACCATCATACACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCA  1462
            |||||||||||.||||..||.|||||.||.||||||.|||||||||||||||||||..||||||||.|||||||
Sbjct 2019  TCGGAAGTCATACCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCA  2092

Query 1463  AGGTTTTTAGTCGAA------------------------------------GAGA-AAACCTTGCACGT-----  1494
            ||...||..||||||                                    |||| |||||||.||.||     
Sbjct 2093  AGACCTTCGGTCGAAATTCAGCCCTTATAATTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAAT  2166

Query 1495  ------------------------------------------CATCATAGACTTCATGCTGGAGAGAAACCTTA  1526
                                                      ||||.||||||||||.||||||||||||||||
Sbjct 2167  GAGTGTGGCAAGGCCTTCAGTCAGAAGTCATCCCTTACATGCCATCTTAGACTTCATACTGGAGAGAAACCTTA  2240

Query 1527  CAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAGATCACACCTTGAAAGACATAGGAGAATTCATACTGGGG  1600
            |||||||||||||||||||||||||||||||||||.||||..||||||||.|||.|||||||||||||||||.|
Sbjct 2241  CAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCAAGCCTTGAAAAACACAGGAGAATTCATACTGGAG  2314

Query 1601  AAAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTGCAAACCATACGAGAGTT  1674
            |.|||||||||||||||||||||||||||||.|||||..||.||||||||..|||.|||.|.|||||.|||.||
Sbjct 2315  AGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTTGGGCGTGATTCACACCTGGCACAACATACTAGAATT  2388

Query 1675  CATACTGGAGAGAAACCTTACAAGTGTAATAAATGTG-----------CG------------------------  1713
            ||.|||||||||||||||||||||||||||.||||||           ||                        
Sbjct 2389  CACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGAACTTCCGTCACAATTCAGCCCTTGTAATTCA  2462

Query 1714  --------------------------------------------------------------------------  1713
                                                                                      
Sbjct 2463  TAAGGCAATTCATAGTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCACAATTCAGCCC  2536

Query 1714  -----------------------------------------------------------AAGGTTTTTAATCAA  1728
                                                                       ||||||||||||..|
Sbjct 2537  TTGAAATTCATAAGGCAATTCATACTGGAGAAAAACCTTACAAGTGTAGTGAATGTGGCAAGGTTTTTAATAGA  2610

Query 1729  AAAGGAATCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGT  1802
            ||||.||.||||.|||..|||||.|||.||||||||||||||||||||||||||||||||.|||||||.|||||
Sbjct 2611  AAAGCAAACCTTTCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATAAATGTGGTAAGGT  2684

Query 1803  TTTTAATCAAAAAGCAAGCCTTGCAAAACATCAGAGAGTTCATACTGCAGAGAAACCTTACAAGTGTAATGAGT  1876
            ||||||||||.|||||..|||||||...|||||.|||.|||||||||.||||||||||||||||||||||||||
Sbjct 2685  TTTTAATCAACAAGCACACCTTGCATGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGT  2758

Query 1877  GTGGCAAAGCCTTTACTGGACAGTCAACACTT-----------ATTCACCATCAAG-CAATCCATGGGTGTAGG  1938
            ||||||||.||||       |.||| |||.||           |||||    .||| ||||.||| ..||.||.
Sbjct 2759  GTGGCAAAACCTT-------CCGTC-ACAATTCAGTCCTTGTAATTCA----TAAGACAATTCAT-ACTGGAGA  2819

Query 1939  GAAACTTTACAAATG-----------------------------------------------------------  1953
            |||||.||||||.||                                                           
Sbjct 2820  GAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAGCAAAACTTGCACGTCATCATAGAATTC  2893

Query 1954  -----------------  1953
                             
Sbjct 2894  ATACTGGAAAGAAACAT  2910

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