Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04800
Subject:
XM_017026800.2
Aligned Length:
2307
Identities:
1460
Gaps:
615

Alignment

Query    1  ATGTTACGTGAGGAAGCCACCAAGAAGAGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGACGCTTGAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TTTCAGGGATGTGGCTATAGAGTTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GGGCTGTGATGTTGGAGAACTACAGGAACCTGGAGTTTGTGGATAGCTCTTTAAAATCCATGATGGAGTTCTCA  222
                    |||.|||||||.||.||||||||||..|...||||||.|||||..||||.||||||||||||||||
Sbjct    1  --------ATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGGAGTTCTCA  66

Query  223  TCAACCAGGCACA-GTATTACAGGAGAAGTGATCCACACAGGGACGTTGCAAAGACATAAAAGTCATCACATTG  295
            |||| .|||.|.| |.|.|||   |||||||||||||||||||||.||||||||||....||||||||||||||
Sbjct   67  TCAA-TAGGGAAAGGCAATAC---AGAAGTGATCCACACAGGGACATTGCAAAGACTGGCAAGTCATCACATTG  136

Query  296  GAGATTTTTGCTTCCCAGAAATGAAGAAAGATATTCATCACTTTGAGTTTCAGTGGCAAGAAGTTGAAAGAAAT  369
            ||||.|.||||||||..|||||..|||||||.||||||.||||||.|||||||||||||||||.|||||.||||
Sbjct  137  GAGAATGTTGCTTCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAAT  210

Query  370  GGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACTGGTAGTACAGACCGAAGTGATCACAGGCATGCTGG  443
            |||||||||||||||||||||.||||||||.|||||||.|||||||||||||.|..||||||.|||||||||||
Sbjct  211  GGCCATGAAGCACCCATGACAGAAATCAAAGAGTTGACGGGTAGTACAGACCAATATGATCAAAGGCATGCTGG  284

Query  444  AAACAAGCCTATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTCCACATGTTTCAGACTA  517
            ||||||||||||||||.||||||||||||.||||||||||||.||||||||||||||.|||||.||||||.|..
Sbjct  285  AAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGCCTGAACTGCACATATTTCAGCCCG  358

Query  518  AAGGGAAAATTAGTAACCAATTGGACAAGTCTAT---CGGTGCTTCCTCAGCTTCAGAATCCCAAAGAATTTCT  588
            |||||||||||.||||.|||.|.||.||||||||   |..|||||||||||.||||..||||||||||||||||
Sbjct  359  AAGGGAAAATTGGTAATCAACTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCT  432

Query  589  TGTAGGCTCAAAACTCATATTTCTAATAAGTATGGGAAGAATTTCCTCCATTCTTCAT---TCACACAAATACA  659
            |||||||.||||||.||||||||||||||.||||||||.||||||.||||||||||||   |||||||.|.|||
Sbjct  433  TGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCTTCCATTCTTCATTACTCACACAGAAACA  506

Query  660  GGAAATATGCATGAGAGAAAAACCTTGCCAAAGTAATGAGTGTGGCAAAGCCTTTAATTATAGCTCACTCTTAA  733
            |||..||..||.||.|||||||.|||.||||..|||||||.||||||||.|||||||||.||||||||||||.|
Sbjct  507  GGATGTACACAGGAAAGAAAAATCTTTCCAATTTAATGAGAGTGGCAAATCCTTTAATTGTAGCTCACTCTTTA  580

Query  734  GGAGACACCACATAACCCATTCAAGAGAGAGAGAATATAAATGTGATGTATGTGGC-AAGATCTTTAATCAGAA  806
            ..|.|||.||.||||..|||..|.||||||.|.||||||||||||||||||||||| |||| ||||||||||||
Sbjct  581  AAAAACATCAGATAATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGGCAAAGA-CTTTAATCAGAA  653

Query  807  GCAATACATTGTATATCATCATAGATGTCACACTGGTGAGAAAACTTACAAGTGTAATGAGTGTGGGAAGACCT  880
            ||.||||.|||.|.|.||||.||||||||||||||||||||||.||||||.|||||||.|.|||||.|||...|
Sbjct  654  GCGATACCTTGCACACCATCGTAGATGTCACACTGGTGAGAAACCTTACATGTGTAATAAATGTGGCAAGGTTT  727

Query  881  TCACTCAGATGTCATCCCTTGTATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGT  954
            |.|.|.|.|...|||.|||||.|.|.|||..|||||.||||||||||||.||||||||||||||||||||||||
Sbjct  728  TTAATAAAAAAGCATACCTTGCACGTCATTATAGACGTCATACTGGAGAAAAACCTTACAAGTGTAATGAGTGT  801

Query  955  GGCAAGACCTTCAGTGAGAAGTCATCC--CTTAG----------------------------------------  986
            ||||||||.||||||||.||||||.||  |||||                                        
Sbjct  802  GGCAAGACGTTCAGTGACAAGTCAGCCCTCTTAGTTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTG  875

Query  987  ------------------------------------------ATGCCATCGTAGACTTCATACTG---------  1009
                                                      |.|.||||.||||.|||||||||         
Sbjct  876  TAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAAC  949

Query 1010  --------------------------------------------------------------------------  1009
                                                                                      
Sbjct  950  CTTACCAATGTAAAGAATGTGACAAAGTTTTCAGTCGCAAATCATACCTTGAAAGACATAGGAGAATTCACACT  1023

Query 1010  --------------------------------------------------------------------------  1009
                                                                                      
Sbjct 1024  GGTGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACATGATTCACACCTGGCACAGCATATTGT  1097

Query 1010  -----------GAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACTTTTGGTCGAAATTCAGCCCTTGTAA  1072
                       ||||||||||||||||||||||||||||||||||.||.||||||..||||||||||||..||.
Sbjct 1098  AATTCACACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACGTTTGGTGAAAATTCAGCCCTCTTAG  1171

Query 1073  TTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGAAATCA  1146
            ||||.|||.|||||||||||||||||||||||||||||||||||||.|||||||||...||||.|||..|||||
Sbjct 1172  TTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTCAATCAACAATCA  1245

Query 1147  TCCCTTCAATGCCATCATATACTTCACACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAATGTTTACAT  1220
            ..||||..|.|.|||||||.||||||.||||||||||||||||||||||||.|||||||||||||.||||.||.
Sbjct 1246  AACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGTTTTCAG  1319

Query 1221  TCGCAGATCACACCTTGAAAGACATAGGAAGATTCATACTGGAGAGGGATCATACAAATGTAAGGTTTGTGACA  1294
            |||||.|||||||||||||||||||||||..|||||.|||||.|||..|.||||||||||||||||||||||||
Sbjct 1320  TCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCATACAAATGTAAGGTTTGTGACA  1393

Query 1295  AGGTTTTCCGGAGTGATTCATACCTTGCAGAACA---------TCA-----GAGAG------------------  1336
            |||.||||.|..||||||||.||||.|||.||||         |||     |||||                  
Sbjct 1394  AGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAAT  1467

Query 1337  ----------------------------------------------------TTCATACTGGAGAGAAACCATA  1358
                                                                ||||||||||||||||||..||
Sbjct 1468  GAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTA  1541

Query 1359  CAAGTGTAATAAATGTGGCAGGAGTTTCAGTCGGAAGTCATCCCTTCAATACCATCATACACTTCACACTGGAG  1432
            ||||||||||.|||||||||..|||||.|.||..||.|||..||||..|||.|||||||.||||||.|||||||
Sbjct 1542  CAAGTGTAATGAATGTGGCAAAAGTTTTAATCACAAATCAAGCCTTGCATATCATCATAGACTTCATACTGGAG  1615

Query 1433  AGAAACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTCGA---AGAGAAAACCTTGCACGTCATCATAGA  1503
            ||||||||||||..||||||||||||||||||||||||||  ||   ||..|.|| ||||||.|||||||||||
Sbjct 1616  AGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAG--GACACAGTCACAA-CTTGCATGTCATCATAGA  1686

Query 1504  CTTCATGCTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAGATCACACCTTGAAAG  1577
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||.|..||.||||||||||||||.
Sbjct 1687  CTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAATATCAAATCACACCTTGAAAT  1760

Query 1578  ACATAGGAGAATTCATACTGGGGAAAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCAT  1651
            ||||||||||.||||||||||.||.||||||||||||||||.||||||.|||||||||||..||.|||||||||
Sbjct 1761  ACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAGGGTTTGCGACAAGGCTTTTGGGCGTGATTCAT  1834

Query 1652  GCCTTGCAAACCATACGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATAAATGTGCGAAGGTTTTTAAT  1725
                                                                                      
Sbjct 1835  --------------------------------------------------------------------------  1834

Query 1726  CAAAAAGGAATCCTTGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAA  1799
                      .||||||||||||||||||||||||.||||||||||||||.|||||.|||||.|..||||.|||
Sbjct 1835  ----------ACCTTGCACAACATCAGAGAGTTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAA  1898

Query 1800  GGTTT-------TTAATCAAAAAGCAAGCCTTGCAAAACATCAGAGAGTTCATACTGCAGAGAAACCTTACAAG  1866
            ||.||       |||.|||.|       |||.|||.|||||...|||.|||||||||.|||||||||||.||||
Sbjct 1899  GGCTTTCAAGTGTTACTCACA-------CCTGGCACAACATACTAGAATTCATACTGGAGAGAAACCTTTCAAG  1965

Query 1867  TGTAATGAGTGTGGCAAAGCCTTTACTGGACAGTCAACACTTATTCACCATCAAGCAATCCATGGGTGTAGGGA  1940
            ||||.|||||||||||||||||||..||.||||||||||||||||||||||||.||||||||| ||||||||||
Sbjct 1966  TGTAGTGAGTGTGGCAAAGCCTTTCGTGCACAGTCAACACTTATTCACCATCAGGCAATCCAT-GGTGTAGGGA  2038

Query 1941  AACTTTACAAATG  1953
            |||||.||     
Sbjct 2039  AACTTGAC-----  2046

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