Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05117
Subject:
NR_026697.2
Aligned Length:
3809
Identities:
1367
Gaps:
2442

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGTGGTGCGAAGCCACCTCCCCCGCCGAATCGCGCATCTGCGCAGTTGCTGTTATTGTGACTTGTCGGGCCACG  74

Query    1  -----------------------------ATGGCTGAGGCCGAAGGGGTTCCCACGACCCCAGGCCCGGCTTCG  45
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCCCCGGATGTTGTGGCTGCCGCGGGGAGATGGCTGAGGCCGAAGGGGTTCCCACGACCCCAGGCCCGGCTTCG  148

Query   46  GGGTCGACTTTCAGGGGCCGCCGAGATGTGTCAGGCTCCTGGGAGCGGGACCAGCAGGTTGAGGCGGCGCAGCG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGTCGACTTTCAGGGGCCGCCGAGATGTGTCAGGCTCCTGGGAGCGGGACCAGCAGGTTGAGGCGGCGCAGCG  222

Query  120  GGCCCTGGTGGAGGTGCTGGGGCCTTACGAGCCTCTGCTGAGTCGGGTGCAGGCAGCCCTGGTGTGGGAGCGGC  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGCCCTGGTGGAGGTGCTGGGGCCTTACGAGCCTCTGCTGAGTCGGGTGCAGGCAGCCCTGGTGTGGGAGCGGC  296

Query  194  CAGCTAGGAGCGCTCTGTGGTGCCTGGGGCTGAACGCGGCTTTCTGGTTTTTTGCCCTGACATCTCTTCGTCTT  267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAGCTAGGAGCGCTCTGTGGTGCCTGGGGCTGAACGCGGCTTTCTGGTTTTTTGCCCTGACATCTCTTCGTCTT  370

Query  268  GTGTTTTTACTTGCATTTGGCTTGATGATCATTGTGTGTATTGATCAATGGAAGAACAAAATCTGGCCTGAAAT  341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTGTTTTTACTTGCATTTGGCTTGATGATCATTGTGTGTATTGATCAATGGAAGAACAAAATCTGGCCTGAAAT  444

Query  342  AAAAGTGCCAAGACCCGACGCATTAGACAATGAGAGCTGGGGCTTTGTGCACCCTCGGTTGCTCAGCGTGCCCG  415
            |||                               ||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAA-------------------------------AGCTGGGGCTTTGTGCACCCTCGGTTGCTCAGCGTGCCCG  487

Query  416  AGCTCTGCCACCATGTAGCTGAAGTCTGGGTTAGTGGGACCATTTTCATAAGGAATGTTTTGCTTTTCAAAAAG  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  488  AGCTCTGCCACCATGTAGCTGAAGTCTGGGTTAGTGGGACCATTTTCATAAGGAATGTTTTGCTTTTCAAAAAG  561

Query  490  CAAAACCCAGGCAAGTTCTGCTTGCTGAGCTGTGGGATACTGACCTTTTTGGCTGTCTTGGGCCGCTACGTCCC  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  562  CAAAACCCAGGCAAGTTCTGCTTGCTGAGCTGTGGGATACTGACCTTTTTGGCTGTCTTGGGCCGCTACGTCCC  635

Query  564  TGGGCTTCTGCTGTCCTACTTGATGCTTGTCACTGTCATGATGTGGCCCCTTGCTGTGTACCACCGACTGTGGG  637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636  TGGGCTTCTGCTGTCCTACTTGATGCTTGTCACTGTCATGATGTGGCCCCTTGCTGTGTACCACCGACTGTGGG  709

Query  638  ATCGAGCATATGTGCGGCTGAAGCCAGCTCTGCAGCGGCTAGACTTCAGTGTCCGTGGCTACATGATGTCCAAG  711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  710  ATCGAGCATATGTGCGGCTGAAGCCAGCTCTGCAGCGGCTAGACTTCAGTGTCCGTGGCTACATGATGTCCAAG  783

Query  712  CAGAGAGAGAGACAATTACGCCGCAGAGCTCTCCACCCAGAACGAGCCATGGACAACCACAGTGACAGCGAAGA  785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  784  CAGAGAGAGAGACAATTACGCCGCAGAGCTCTCCACCCAGAACGAGCCATGGACAACCACAGTGACAGCGAAGA  857

Query  786  GGAGCTTGCTGCCTTCTGTCCTCAGCTGGACGATTCTACTGTTGCCAGGGAATTGGCCATCACAGACTCTGAGC  859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  858  GGAGCTTGCTGCCTTCTGTCCTCAGCTGGACGATTCTACTGTTGCCAGGGAATTGGCCATCACAGACTCTGAGC  931

Query  860  ACTCAGACGCTGAAGTCTCCTGTACAGACAATGGCACATTCAATCTTTCAAGGGGCCAAACACCTCTAACGGAA  933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  932  ACTCAGACGCTGAAGTCTCCTGTACAGACAATGGCACATTCAATCTTTCAAGGGGCCAAACACCTCTAACGGAA  1005

Query  934  GGCTCTGAAGACCTAGATGGTCACAGTGATCCAGAGGAATCCTTTGCCAGAGACCTTCCAGACTTCCCTTCCAT  1007
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006  GGCTCTGAAGACCTAGATGGTCACAGTGATCCAGAGGAATCCTTTGCCAGAGACCTTCCAGACTTCCCTTCCAT  1079

Query 1008  TAATATGGATCCTGCTGGCCTGGATGATGAGGACGACACTAGCATTGGCATGCCCAGCTTGATGTACCGTTCTC  1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080  TAATATGGATCCTGCTGGCCTGGATGATGAGGACGACACTAGCATTGGCATGCCCAGCTTGATGTACCGTTCTC  1153

Query 1082  CGCCAGGGGCTGAGGAGCCCCAGGCCCCACCTGCCAGCCGGGACGAGGCTGCGCTGCCGGAGCTCCTGCTTGGT  1155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154  CGCCAGGGGCTGAGGAGCCCCAGGCCCCACCTGCCAGCCGGGACGAGGCTGCGCTGCCGGAGCTCCTGCTTGGT  1227

Query 1156  GCTCTTCCTGTAGGATCCAACCTCACCAGCAACCTTGCCAGCCTGGTCTCCCAGGGTATGATTCAGCTGGCCTT  1229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228  GCTCTTCCTGTAGGATCCAACCTCACCAGCAACCTTGCCAGCCTGGTCTCCCAGGGTATGATTCAGCTGGCCTT  1301

Query 1230  GTCAGGGGCCTCCCAACCAGGCCCTTCTGGAGCACCTGCCCAGAGAGCAACGAGAGGCTTCCTCCGGTCCCCCA  1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302  GTCAGGGGCCTCCCAACCAGGCCCTTCTGGAGCACCTGCCCAGAGAGCAACGAGAGGCTTCCTCCGGTCCCCCA  1375

Query 1304  GTTCAGACCTGGACACTGATGCTGAGGGGGATGACTTTGAACTTCTGGACCAGTCGGAGCTGAGTCAGCTGGAC  1377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376  GTTCAGACCTGGACACTGATGCTGAGGGGGATGACTTTGAACTTCTGGACCAGTCGGAGCTGAGTCAGCTGGAC  1449

Query 1378  CCTGCCAGTTCTAGGAGCCAC-----------------------------------------------------  1398
            |||||||||||||||||||||                                                     
Sbjct 1450  CCTGCCAGTTCTAGGAGCCACTGAGGCAGAGACTCCTTTTGGGAGTCACTGTGGTTTAGGTTTTTTTCTCCCCA  1523

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1524  TCCCACTTAAGGTGATGGGGCAAGGGAAGAACTCAGCTCCCCTCCCCTGAATTATATTTGTATGCTGGGTGGCC  1597

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1598  TGGCTGATGCTCAGAGGCCTCCTTAGAGAGGACACTCACTCCCCTCCCACCAGCTGGATGCCCATTTCTGAGCT  1671

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1672  CAGTCACTGAAGTGAGAGTGTGCTCCCCCAAGGGAGGCTTCTCTCCATCAGGATGGTACTTTGGGGGAACAAAA  1745

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1746  TAGTCAGGGATATTGGTTCCCCTTTGAGGAGGTGCTGCTGTTTGCTTTTAGGTATGAGTGCTCAGGGGCCCTCA  1819

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1820  CTGAAAGAGCCCATGCCTGCCTTCCTCCTTTCATCGCCTCTCTAGAGCCCCCAAAGTCAGGCAGCAGCTGGAGT  1893

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1894  AGTTACATTGTCATCATCTTTTTTTTTGAGACAGTTTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATC  1967

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 1968  TTGGCTTTCTGCAACGTCTGCCTTCCAGGTTGAAGAGGTTCTCCTGCCTCAGCCTCCTTAGTAGTGGGATTACA  2041

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2042  GGTGCCCGCTACTATGCCCGGCTAATTTTTCTTTTGGTATTTTTAGTAGAAATGGGGTTTCACCATGTTGGCCA  2115

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2116  GGCTGGTCTCAAACTCCTGACCTCAAGTGAGCTGACTGCCTTGGCCTCCCAGAGTGCTGGGATTAGTCGTCATC  2189

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2190  TTTTGTTAAACCAGGATTTGATTTTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTGAGACAGAGTCTCTCT  2263

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2264  CTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAGCCTCCGCCTGCCGGGTCAAGCGATTCT  2337

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2338  CCTACCTCAGCCTCCTCAGTAGCTGAGATTACAGGCATGCACCACCATGCCCGGCTAATTTTTTTGTGTTTTTA  2411

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2412  GTAGAGATGGGGTTTCACCGTGCTGGCCAGGCTGGTCTAGAACTCCTGACTGCAAATGATCAGCCCGCCTCAGC  2485

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2486  CACCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGTGCCCAGCGTGATTTTTTTTTTTTTTTAAAGCAAACTT  2559

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2560  GTCCTTTGGTTTTGCAGAACAGGCCTGCTCCCTCTCATCTAGCCCATCATTTCTTGGGGCCTGAACCCCAGTGG  2633

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2634  TCCAAAGTATTGCTTGTGAAATTTAAAAAATGTGAATATGATGTGGGGATGGGCCTCTTCTACATTACCTTGGC  2707

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2708  CCAGGGGGATCAGCTGGCTGGGAGGATTAGTGAGCACCTCTGTATTTTGAGGTCTGAGTCTTCTGGAGCTGTGT  2781

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2782  AGTTAATCTTCGGTTTCTGATAACCCCTGGGTCCATCTGGCCATCAGCCTCAGCAGTGAGCAAAGCAATACCAT  2855

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2856  ACTCATTTCTATGTTCCTGTTCCTTCCTCTGCTCCTCCTTTGGAGAAGCAATAATTCATGGGGGATGATACAGT  2929

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 2930  AGCACTTTACAAATGGCTCCATGTCATTCATCCCAGGGGCCATAATCTCTTGCACCACCTATTCTTACTTCCTG  3003

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3004  TTCAGCTCCTTTACAGCTTTTATTTTCAACTGCTTCCCAACTTGGTGGGGCCTCCTTTAAGGATGAGCCAATAG  3077

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3078  TAAGAATGTGGCTGTAATCAGCAGAGACCCCTCTGAGGGGTATCTGTTCTGCAGCCCCTAGTGAAATCATGTGA  3151

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3152  TGTGAGACAGAAACCTAAACATGGTACTTGATTCTAAACCTGTGCCAGTCTATAGCCTCTGCCTCCCCAAGCAG  3225

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3226  AGCTCAAGCCAAACGCTTCTGTCCTCTTTCCTTCTGCATTAACCCTTTGCTGATCCTCAGGGGCCACTCCCCCA  3299

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3300  ACACCCCTGTACTTGGGTGAGGGATGTTGGACAGAGCCTGTTTTCATGTACTGCAGGTGGGGGTGTGCTGACAT  3373

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3374  GTTTGCTCTTGGTTGATGGAGAAGGTACAGAGGCCAGGGAGTGAAAATGGTTGACAGAAGAGGGAAGAGTTAGG  3447

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3448  TGTCTCATAGTCACTCATAGTGGGGTGGTCAGGGGTAATGGCATCTCCCCACTTTAGGCTTCTCAAACAGACTT  3521

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3522  TTGACACCTCTCAAGTTCAGAGCTCTGATGTGGAAAGACAGGAGGTGTGGGGAAGGAGGGGGATTTCGTGTGTT  3595

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3596  TGCATGAGTGTGCGCTTCAGGCCTTGGGAGTTGGCAAGAGGGAGGGAAGGAAGGAGAGCAAAATCTTCGGAAGG  3669

Query 1399  --------------------------------------------------------------------------  1398
                                                                                      
Sbjct 3670  TGTTTCTTGTACCTGAGGGATCCTGCCCTGAATCTCCATAGTCTCCACTGTGAACTGAGGAGGGGAGGGGTGTG  3743

Query 1399  -----------------------------------  1398
                                               
Sbjct 3744  CTGGGGAATAAATCTTGTATGAGAACAATCTTTAA  3778

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