Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05120
Subject:
NM_001369764.1
Aligned Length:
2176
Identities:
1269
Gaps:
713

Alignment

Query    1  ATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||.|||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148
            |||||||||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||||||       
Sbjct   75  GGACCCTGCTCAGAGGACTCTTTACAGGGATGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTG-------  141

Query  149  CTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTG  222
                                               |||||||||||||||||||.|.|||||||||||||||||
Sbjct  142  -----------------------------------GGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTG  180

Query  223  CAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTT  296
            ||.||||||||||||.||||||||||||..|||||||.||||.|||||||||||||||||||||.|||...|||
Sbjct  181  CAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTT  254

Query  297  TCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAG  370
            |||||||.||||||||||||||||||||||||.||||||||||||||||||.|||.||||||||.|||||||||
Sbjct  255  TCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAG  328

Query  371  ACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTG  444
            .||.|.|||||||||||||||||||||||||||.||||||||.||||||||.||.|||.|||||||.||||.||
Sbjct  329  GCCAACATGATCAAAGGCATGCTGGAAACAAGCATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTG  402

Query  445  C-----------------------GAAG----------------------------------------------  449
            |                       ||||                                              
Sbjct  403  CCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTC  476

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct  477  AGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCC  550

Query  450  ---------------------------------ACATAGGAGAA------------------------------  460
                                             ||||..|||||                              
Sbjct  551  ATTCTTCATTACTCACACAAAAACGGAATGTACACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAA  624

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  625  TCCTTTAATTGTAGCTCACTTTTAAAAAAACATCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATGT  698

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  699  ATATGGCAAGGTATTTAATCAGAAGCGATACCTTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTACA  772

Query  461  ------------------------------------------------------------TTCATACTGGAGAG  474
                                                                        |||||||||.|||.
Sbjct  773  AGTGTAATGAGTGTGGCAAGATCTTTGGTCACAATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGAC  846

Query  475  AAACCTTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCA  548
            ||||||||..||||||||||||||||.||||||||||||.||||||||||.|||||||.|||||.|||||||.|
Sbjct  847  AAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTTA  920

Query  549  TACTGGAGAGAAACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGCATG--ATTCACACCTGGCAAAACA  620
            ||||||||.||||||||||||||||||||||||.|||||.|||||.|  ||||  |||||.||||.||||||||
Sbjct  921  TACTGGAGGGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTCA--CATGTAATTCATACCTAGCAAAACA  992

Query  621  TACTAGAATTCACAGGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCC  694
            |||||.||||||||..|||||.||||.|||||..||||||||||||||||||||||||.|||.|....||||||
Sbjct  993  TACTATAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCC  1066

Query  695  TTGCATGTCATCATAGAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTT--AGTC  766
            |||||.|.||||.|||...||||||||||||||||||||||.|.|||.|.||.||||  ||.|..|||  ||||
Sbjct 1067  TTGCACGCCATCGTAGGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTG--AAAAAGTTTTCAGTC  1138

Query  767  AGACATCACACCTTGTGTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAG  840
            ..|.||||||.||||.....|||.|.||..|.|||||||||||||||||.|||||||||||.|..||||.||||
Sbjct 1139  GCAAATCACATCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAG  1212

Query  841  ACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGA  914
            .|.||.||....||||||..|||.|.||..||||....|.||||.||||.||||||.||.||.|||||||||||
Sbjct 1213  GCTTTTGCATATAATTCATACCTGGCAAAACATAGTATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGA  1286

Query  915  ATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACA  988
            ||||||||||||||||||.||||.|.|||||||||||.|.||||.||||.||||.||||.|||||||||.||||
Sbjct 1287  ATGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACGCCATCATAGACTTCATACTGCAGAGAAACCATACA  1360

Query  989  GATGTGAAGAATGCGACAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAG  1062
            .||||||||||||.||||||||||||||..||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1361  AATGTGAAGAATGTGACAAAGTTTTCAGGTGCAAATCACACCTTGAAAGACATAGGAGGATTCATACTGGAGAG  1434

Query 1063  AAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCA  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||.|.|||.|||||||||||||||||||
Sbjct 1435  AAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTACAGAACATCAGAGAGTTCA  1508

Query 1137  TACTGGAGAGAGACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATC  1210
            |||||||||||.|||.||||..|||||||||||||||||||||||||||||||||||..||||.||||||||||
Sbjct 1509  TACTGGAGAGAAACCATACATGTGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCAAACCTTGCATGTCATC  1582

Query 1211  AAAAACTTCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTT  1284
            |.|||||||||||||.||||||||..|||.||||||||||||||||.|||||||.||.|||||||||||||.|.
Sbjct 1583  ATAAACTTCATACTGCAGAGAAACCGTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTCGCAAATCACACATG  1656

Query 1285  GAAAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGT--GGTGATTGTGGTA-AAGCCTTTAATTC  1355
            |||||||||||||||||||||||.|||||||||||..||||.|||  |||  |||||  | |||.||||     
Sbjct 1657  GAAAGACATAGGAGGATTCATACTGGAGAGAAACCGTACAAATGTAAGGT--TTGTG--ACAAGGCTTT-----  1721

Query 1356  ACC-------TTCACACCTTATTAGG-----CATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATC  1417
             ||       |||||||||     ||     |||||||||.|.|||||||||.|||||.|||||||.|||.||.
Sbjct 1722  -CCGGAGGGATTCACACCT-----GGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATG  1789

Query 1418  AGTGTGGCAAGGTCTTTAGTCTGAGGTCACTC-CTTGCAGAA--CATCAGAAAATTCCTTTTGGAGACAATTGT  1488
            |||||||||||..|||..|||.||..||| || |||  |.||  ||||..|...|||.|..||||||.||...|
Sbjct 1790  AGTGTGGCAAGACCTTCCGTCAGACATCA-TCGCTT--ATAATCCATCGTAGGCTTCATACTGGAGAGAAACCT  1860

Query 1489  TTCAAGTGCAATGAGTATAGCAA-----------------------------ACCATCA-AGCATTAAT-----  1527
            |.||||||.|||||||.|.||||                             ||||||| ||..||.||     
Sbjct 1861  TACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATACCATCATAGGCTTCATAGTGG  1934

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1935  AGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACACCTTGCACAGCATCAGAGAG  2008

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2009  TTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATAC  2082

Query 1528  ------------------------------  1527
                                          
Sbjct 2083  CATCATAGACTTCATAGTGGAGAGAAACCT  2112

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