Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05120
Subject:
NR_102299.2
Aligned Length:
4799
Identities:
1340
Gaps:
3293

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGTCCCTCTCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCTTAGGTTCCGTCTCTCGTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTCACACCCCGACATGGATGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGGGGCCACATCTGGATGCACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTA  370

Query    1  -----ATGGCTCTTTCTCA----------GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  59
                 |||         ||          |||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct  371  TTAATATG---------CACGAAGTACGTGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGA  435

Query   60  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  133
            ||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|
Sbjct  436  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCG  509

Query  134  TCTCCCTG------------------------------------------------------------------  141
            ||||||||                                                                  
Sbjct  510  TCTCCCTGGAGTTTTGGTCTGTCATCCCGGCTAAAGTACAGTGGTGTCATCTCCGCTCACTGCAACCTCCACTT  583

Query  142  ----------------------------------------------------GATATCTCTTCCAAATGCATGA  163
                                                                |||||||||||||||||||||.
Sbjct  584  CCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCAAGTACCTGGGACTACAGATATCTCTTCCAAATGCATGT  657

Query  164  TGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGT  237
            ||||.||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  658  TGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCACAGACAAGCAAGT  731

Query  238  TATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGA  311
            .||||||||||||.||||||.|.|||.||||||||||||||||||||||.|||.|.||||||||||.|||||||
Sbjct  732  CATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACATTCATGGCTTCGAGTTTCAGTGGAAAGAAGA  805

Query  312  TGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAA  385
            |||||||||||.|||||.||||||||||||||||||.|||.|||||.||.|||||||||.||.|.|||||||||
Sbjct  806  TGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGTTGGCTGGTAGTACAGGCCAACATGATCAAA  879

Query  386  GGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTGC--------------  445
            ||||||||||||||||||.||||||||.||||||||.||||||.||||||||||||.|||              
Sbjct  880  GGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAGCTTTCATTTGCATCTGCCTGAACCGCACATA  953

Query  446  ---------GAAG-------------------------------------------------------------  449
                     ||||                                                             
Sbjct  954  TTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCA  1027

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct 1028  AAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCA  1101

Query  450  ------------------ACATAGGAGAA---------------------------------------------  460
                              ||||..|||||                                             
Sbjct 1102  CACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAATTGCAGC  1175

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1176  TCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAAGGTCTT  1249

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1250  TAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTG  1323

Query  461  ---------------------------------------------TTCATACTGGAGAGAAACCTTACAAATGT  489
                                                         ||||||||||||||||||||||..|||||
Sbjct 1324  GCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTATGAATGT  1397

Query  490  GAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACC  563
            |||||||||||.||||||||||||.||||||||||.|||||||.|||||.||..||||||||||||||||||||
Sbjct 1398  GAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACC  1471

Query  564  ATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGC--ATGATTCACACCTGGCAAAACATACTAGAATTCACAG  635
            ||||||||||||||||||.||..|||||||  .||  ||.|||||.|.||||||||||||||||.|.||||||.
Sbjct 1472  ATACAAATGTAAGGTTTGTGATGAGGCTTT--CGCATATAATTCATATCTGGCAAAACATACTATACTTCACAC  1543

Query  636  GGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATA  709
            .|||||.||||.||||||||||||||||||||||||.||||||.|||.|..|.|||||||||||.|.|||||||
Sbjct 1544  TGGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCATCATA  1617

Query  710  GA-----------AG-----------------------------------------------------------  713
            ||           ||                                                           
Sbjct 1618  GACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAA  1691

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1692  AGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTTTTCAGTCGCAAATC  1765

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1766  AAACCTGGAAAGACACAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCC  1839

Query  714  ----------------------------------TCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGC  753
                                              |||||||||||||||||||||.||||||||||||||||||
Sbjct 1840  AGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1913

Query  754  AAGACCTTTAGTCAGACATCA------------CA---------------------------------------  776
            ||||||||..|||||||||||            ||                                       
Sbjct 1914  AAGACCTTCGGTCAGACATCATCGCTTATAATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAA  1987

Query  777  ---------------------------------CCTTGTGTACCATCATAGACTGCATACTGGAGAGAAACCTT  817
                                             ||||||.|||||||||||.||.||||.|||||||||.||||
Sbjct 1988  TGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACCATCATAGGCTTCATAGTGGAGAGAAGCCTT  2061

Query  818  ACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCA  891
            |..|.||||||||||||||||||||||||..||..||||||..||| ||||.||||||||||.|||||||||.|
Sbjct 2062  AATAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTCAACCCT-GTAAGTCATAAGGCAATTCATACTGGA  2134

Query  892  GAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGT  965
            ||||||||.||.|||..||||||||||||||||||||||||.|||..||||||..|||||...||.|.||||.|
Sbjct 2135  GAGAAACCTTACAAGCATAATGAATGTGGCAAGGTTTTTAATCAAAAAGCAACCTTTGCACATCACCATAGACT  2208

Query  966  TCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGAC-AAAGTTTTCAGTCGCAAATCACATCTTGAAAGA  1038
            |||.|||||||||||||||||||.|||.||.|||||.||| ||||||||||||.|.||||||.|.|||.|||.|
Sbjct 2209  TCATACTGGAGAGAAACCTTACAAATGGGAGGAATGTGACAAAAGTTTTCAGTTGTAAATCAAACCTTAAAACA  2282

Query 1039  CATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTG------A  1106
            ||||.||..|||||.|.||.||||||||||||||.|.||||||||||||||||||.|||      ||      |
Sbjct 2283  CATAAGAAAATTCACATTGAAGAGAAACCATACAGAGGTAAGGTTTGTGACAAGGTTTT------TGCATATAA  2350

Query 1107  TTCACGTCTTGCAGAACA---------TCA-----GAGAG----------------------------------  1132
            |.||..|||.|||.||||         |||     |||||                                  
Sbjct 2351  TGCATATCTGGCAAAACATACTAGAATTCACACTGGAGAGAAACTCATTATAAGTGTAATGAGTGTGGCAAGAC  2424

Query 1133  ------------------------------------------------------TTCATACTGGAGAGAGACCT  1152
                                                                  ||||||.||||||||.||||
Sbjct 2425  CGTTGGTCAAAATTCACACCTTGTAATTAAAAGGTCAAAATTCACACCTTGTAATTCATAGTGGAGAGAAACCT  2498

Query 1153  TACA--CATGTAATGAATGTGGCAAGGTTTTTAGTACAA-AAGCGTACCTCGCATGTCATCAAAAACTTCATAC  1223
            ||||  ||  .||||||||||.||.||||||||.| ||| ||.|..||||.|||.|||||||.|.|||||||||
Sbjct 2499  TACAAGCA--CAATGAATGTGACATGGTTTTTAAT-CAACAATCACACCTTGCAAGTCATCATAGACTTCATAC  2569

Query 1224  TGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAA----------------------  1275
            ||.|.|||||..||||.||.|||||.|||||||||||||||.|||||.||||                      
Sbjct 2570  TGCATAGAAATCTTACAAACGTGAACAATGTGACAAAGTTTTCATTCACAAATCCAGCTTCAAATACATAGGAG  2643

Query 1276  ---TCACAC-----------------------------------------------------------------  1281
               ||||||                                                                 
Sbjct 2644  AATTCACACTGGAGAAAAGCCATAGAAATGTAAGGTTTGTGACAAGGCTTTCGGGAATGATTCACACGTGGCAC  2717

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2718  CCCATACTAGAATTCACACTGGAGAGAAACCTTACAAGTGCAATGAGTGTGGCAAACCCTTTAGTGGGCAGTCA  2791

Query 1282  ---------------------------------------CTTGA------------------------------  1286
                                                   |||||                              
Sbjct 2792  CCACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTTTTCAG  2865

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2866  TAATGCTACAACCATTGCACATCATTGGAGAATCCACAGTGAAGAGATCTTACAAGTGTAATAAATGTGGCAAA  2939

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2940  TTTTTCAGACATCGTTCATGCCTTGCATTTCACTGGTGAACTCATGCTGGAGAGAAACCTTATAAATGTCATGA  3013

Query 1287  ------------------------------------AAGACATAGGAGGATTCATACAGGAGAGAAACCTCACA  1324
                                                ||.|||||||||||||||||||||||||||||||||||
Sbjct 3014  TTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGGATTCATACAGGAGAGAAACCTCACA  3087

Query 1325  AGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATACTGGACAG  1398
            ||||||.|||||||||.|||||.||||.|||||.|||||||||.|||||.|||||||||||||||.||||||||
Sbjct 3088  AGTGTGATGATTGTGGCAAAGCGTTTACTTCACATTCACACCTCATTAGACATCAGAGAATCCATGCTGGACAG  3161

Query 1399  AAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGAAAATTCC  1472
            ||||||||||||||||||||||||||.|.||||||.||||..|||||||||||||||||.|||||||.||||||
Sbjct 3162  AAATCTTACAAATGTCATCAGTGTGGAAGGGTCTTCAGTCCAAGGTCACTCCTTGCAGACCATCAGACAATTCC  3235

Query 1473  TTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCATTAAT-------------------  1527
            |||||||||||.|||||||||.||||.||||||||||||||||||||||||||||                   
Sbjct 3236  TTTTGGAGACAGTTGTTTCAAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGACATTAGAGTCAAATCA  3309

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3310  GCCTTGACCTGAGTTTGTTGATTTAACATTGATTTCAAGCATTAATTGCCATTAAACTGTTTATGTTAAGAGGA  3383

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3384  TTGCACTGGGGGCCATGGCTCATGCCTGTAATTCCAGCACTTTGAGAGGCAAAGACAGGTAGGTCACTGGAGCT  3457

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3458  CACGAGTTTGAGAACAGCCTAGCCAACAGATGGGAGCTACTTTTCCCAGCCTTTATTTTCTTTTTCTTGTTTTT  3531

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3532  TTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCT  3605

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3606  CCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGTCTCCCAAGTAGCTGACACTACAGTTGTGTGCCACCACACCT  3679

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3680  GGGTAATTTTTTGTGTTTTTAGTAGAGACTGGGTTTCACCGTGTTAGCCAGAATGGTCTCTATCTTCTGACTTT  3753

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3754  ATGATCCACCCGACTCCACCTCCCAAAGTGCTGAGATTACAGGAGTGAGCCACTGTGCCTGGCCTGTTTTTTGT  3827

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3828  TTCTTTAACAAAAAGTTATAGAGACTTCTATGAGTATTGTACCGAATCTAAATCACAATTGAGTATATAATCAT  3901

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3902  TGAGCGATATTCATTTTTCCAATCAGTATGGGATTTATATCTATTTATACATGTTTTTAATCATTTTGATCAAT  3975

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3976  GTTTATAGATTTCAAGGTACAAACCTCACTTTTTATGTTTATTCCTAAATATTTCTTACTTTAAGTTCTTTAGC  4049

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4050  AAATGGAATTGGTTTTTAATTTTCTTTTAAAATTATTTATTGTTAATGTATGGAAATTCAACTAATTTTTGGTG  4123

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4124  CTGTTATTCTATTCTGCAAATAAACTGAATGTGTTTGTTAGTTCCAGTTGCATTTTGGCTGACTCTTTGTGATT  4197

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4198  TTCTTTACAGAAGGTCATGTCATCTACAAACAAATAAAATTTGACTTCTTTCTTTCTGATTTGGATGAGTTTGA  4271

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4272  TTTCTTTTGCTATTTCATTGTTCTGGCTAGGACAGCCAGTATTGATTGAATAGAAGGGGTGAGAGCATTCTTGC  4345

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4346  ATCATGTGAGATCCTACAGGAAAAGCATTCCGTTTTCCCTGATTGGTTATTTCTGCTGTGGTCATTTCATGGAT  4419

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4420  GGTCTTTGTATTGCTGAGGTAAATTTTCTTCTGTATCTATTTTGTGTGGGATTTCTATGATGACTTGATGTTGA  4493

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4494  CTTTTGTGAAATGCTTTTTCTCCATGTATTGAGATGATGTGGTTTTCATCTTTCATTGTGTTCAAGTGGTATAT  4567

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4568  CACATTGATTTGCTTGACTATGTTGAACCATCCTTGCATCCCAGAAATAAGTGGCACTTGCATATCTACAATCC  4641

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4642  TTTTAATATCCTCTTGAATACAGTTCGCTAGTACAAGGGGTCTTCAAGAAGTTCATGAAAAAAATACATATTAT  4715

Query 1528  ---------------------------------------------------------------  1527
                                                                           
Sbjct 4716  GTGAAAATTGCACATGATGTCACATTTTCTGCACCAAAATAAACTGGCACAAATCTGTTATAA  4778

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