Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05120
Subject:
NR_102300.2
Aligned Length:
4780
Identities:
1340
Gaps:
3274

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGTTCCGTCTCTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGGGCTCACACCCCGACATGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTTCAGGGGCCACATCTGGATG  296

Query    1  ------------------------------------------------------------ATGGCTCTTTCTCA  14
                                                                        |||         ||
Sbjct  297  CACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTATTAATATG---------CA  361

Query   15  ----------GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGAC  78
                      |||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  CGAAGTACGTGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGAC  435

Query   79  CCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTG-----------  141
            |||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|||||||||           
Sbjct  436  CCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCGTCTCCCTGGAGTTTTGGTC  509

Query  142  --------------------------------------------------------------------------  141
                                                                                      
Sbjct  510  TGTCATCCCGGCTAAAGTACAGTGGTGTCATCTCCGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCAATTCT  583

Query  142  ---------------------------------GATATCTCTTCCAAATGCATGATGAATACATTGTCATCAAC  182
                                             |||||||||||||||||||||.||||.||.|||||.|||||
Sbjct  584  CCTGCCTCAGCCTTCCAAGTACCTGGGACTACAGATATCTCTTCCAAATGCATGTTGAAGACGTTGTCGTCAAC  657

Query  183  AGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTT  256
            ||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||||||||||||.|||||
Sbjct  658  AGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCACAGACAAGCAAGTCATCACATTGGAGAATTTT  731

Query  257  GCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAA  330
            |.|.|||.||||||||||||||||||||||.|||.|.||||||||||.||||||||||||||||||.|||||.|
Sbjct  732  GTTTCCATGAAATTGAGAAAGACATTCATGGCTTCGAGTTTCAGTGGAAAGAAGATGAAACAAATGGCCATGCA  805

Query  331  GCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCC  404
            |||||||||||||||||.|||.|||||.||.|||||||||.||.|.|||||||||||||||||||||||||||.
Sbjct  806  GCACCCATGACAGAAATCAAAGAGTTGGCTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCG  879

Query  405  TATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTGC-----------------------GAAG------  449
            ||||||||.||||||||.||||||.||||||||||||.|||                       ||||      
Sbjct  880  TATTAAAGATCAGCTTGGATCAAGCTTTCATTTGCATCTGCCTGAACCGCACATATTTCAGTCTGAAGGGAAAA  953

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct  954  TTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCC  1027

Query  450  -------------------------------------------------------------------------A  450
                                                                                     |
Sbjct 1028  AAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAATGGGAAGTACA  1101

Query  451  CATAGGAGAA----------------------------------------------------------------  460
            |||..|||||                                                                
Sbjct 1102  CATGAGAGAAAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAATTGCAGCTCACTCTTAAAAAAACATC  1175

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1176  AGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTT  1249

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1250  GCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGGTCATAA  1323

Query  461  --------------------------TTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAAAGTTT  508
                                      ||||||||||||||||||||||..||||||||||||||||.|||||||
Sbjct 1324  TTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGACAAAGTTT  1397

Query  509  TCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGC  582
            |||||.||||||||||.|||||||.|||||.||..||||||||||||||||||||||||||||||||||||||.
Sbjct 1398  TCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGT  1471

Query  583  GACAAGGCTTTTAAGC--ATGATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTACACA  654
            ||..|||||||  .||  ||.|||||.|.||||||||||||||||.|.||||||..|||||.||||.|||||||
Sbjct 1472  GATGAGGCTTT--CGCATATAATTCATATCTGGCAAAACATACTATACTTCACACTGGAGAGAAACCTTACACA  1543

Query  655  TGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATAGA-----------AG----  713
            |||||||||||||||||.||||||.|||.|..|.|||||||||||.|.|||||||||           ||    
Sbjct 1544  TGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCATCATAGACTTCATACTGGAGAGAA  1617

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1618  ACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATA  1691

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1692  GTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTTTTCAGTCGCAAATCAAACCTGGAAAGACACAGG  1765

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1766  AGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCAGAGGGATTCACACCTGGC  1839

Query  714  ---------------TCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACAT  772
                           |||||||||||||||||||||.||||||||||||||||||||||||||..|||||||||
Sbjct 1840  ACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACAT  1913

Query  773  CA------------CA----------------------------------------------------------  776
            ||            ||                                                          
Sbjct 1914  CATCGCTTATAATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTC  1987

Query  777  --------------CCTTGTGTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGG  836
                          ||||||.|||||||||||.||.||||.|||||||||.|||||..|.||||||||||||||
Sbjct 1988  AGTCAGATGTCATCCCTTGTATACCATCATAGGCTTCATAGTGGAGAGAAGCCTTAATAGTGTAATGAGTGTGG  2061

Query  837  CAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTA  910
            ||||||||||..||..||||||..||| ||||.||||||||||.|||||||||.|||||||||.||.|||..||
Sbjct 2062  CAAGACCTTCCATCACAATTCAACCCT-GTAAGTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGCATA  2134

Query  911  ATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCT  984
            ||||||||||||||||||||||.|||..||||||..|||||...||.|.||||.||||.|||||||||||||||
Sbjct 2135  ATGAATGTGGCAAGGTTTTTAATCAAAAAGCAACCTTTGCACATCACCATAGACTTCATACTGGAGAGAAACCT  2208

Query  985  TACAGATGTGAAGAATGCGAC-AAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTG  1057
            ||||.|||.||.|||||.||| ||||||||||||.|.||||||.|.|||.|||.|||||.||..|||||.|.||
Sbjct 2209  TACAAATGGGAGGAATGTGACAAAAGTTTTCAGTTGTAAATCAAACCTTAAAACACATAAGAAAATTCACATTG  2282

Query 1058  GAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTG------ATTCACGTCTTGCAGAACA-  1124
            .||||||||||||||.|.||||||||||||||||||.|||      ||      ||.||..|||.|||.|||| 
Sbjct 2283  AAGAGAAACCATACAGAGGTAAGGTTTGTGACAAGGTTTT------TGCATATAATGCATATCTGGCAAAACAT  2350

Query 1125  --------TCA-----GAGAG-----------------------------------------------------  1132
                    |||     |||||                                                     
Sbjct 2351  ACTAGAATTCACACTGGAGAGAAACTCATTATAAGTGTAATGAGTGTGGCAAGACCGTTGGTCAAAATTCACAC  2424

Query 1133  -----------------------------------TTCATACTGGAGAGAGACCTTACA--CATGTAATGAATG  1169
                                               ||||||.||||||||.||||||||  ||  .||||||||
Sbjct 2425  CTTGTAATTAAAAGGTCAAAATTCACACCTTGTAATTCATAGTGGAGAGAAACCTTACAAGCA--CAATGAATG  2496

Query 1170  TGGCAAGGTTTTTAGTACAA-AAGCGTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAA  1242
            ||.||.||||||||.| ||| ||.|..||||.|||.|||||||.|.|||||||||||.|.|||||..||||.||
Sbjct 2497  TGACATGGTTTTTAAT-CAACAATCACACCTTGCAAGTCATCATAGACTTCATACTGCATAGAAATCTTACAAA  2569

Query 1243  TGTGAAGAATGTGACAAAGTTTACATTCGCAAA-------------------------TCACAC----------  1281
            .|||||.|||||||||||||||.|||||.||||                         ||||||          
Sbjct 2570  CGTGAACAATGTGACAAAGTTTTCATTCACAAATCCAGCTTCAAATACATAGGAGAATTCACACTGGAGAAAAG  2643

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2644  CCATAGAAATGTAAGGTTTGTGACAAGGCTTTCGGGAATGATTCACACGTGGCACCCCATACTAGAATTCACAC  2717

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2718  TGGAGAGAAACCTTACAAGTGCAATGAGTGTGGCAAACCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAG  2791

Query 1282  --------------------CTTGA-------------------------------------------------  1286
                                |||||                                                 
Sbjct 2792  CAATCCATGGTATAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCA  2865

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2866  CATCATTGGAGAATCCACAGTGAAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTCAGACATCGTTCAT  2939

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2940  GCCTTGCATTTCACTGGTGAACTCATGCTGGAGAGAAACCTTATAAATGTCATGATTGAGGCAAGGTCTTCAGT  3013

Query 1287  -----------------AAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAA  1343
                             ||.|||||||||||||||||||||||||||||||||||||||||.|||||||||.||
Sbjct 3014  CAAGCTTCATCCTATGCAAAACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAA  3087

Query 1344  AGCCTTTAATTCACCTTCACACCTTATTAGGCATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATC  1417
            |||.||||.|||||.|||||||||.|||||.|||||||||||||||.|||||||||||||||||||||||||||
Sbjct 3088  AGCGTTTACTTCACATTCACACCTCATTAGACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATC  3161

Query 1418  AGTGTGGCAAGGTCTTTAGTCTGAGGTCACTCCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTC  1491
            |||||||.|.||||||.||||..|||||||||||||||||.|||||||.|||||||||||||||||.|||||||
Sbjct 3162  AGTGTGGAAGGGTCTTCAGTCCAAGGTCACTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTC  3235

Query 1492  AAGTGCAATGAGTATAGCAAACCATCAAGCATTAAT--------------------------------------  1527
            ||.||||.||||||||||||||||||||||||||||                                      
Sbjct 3236  AAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGACATTAGAGTCAAATCAGCCTTGACCTGAGTTTGTT  3309

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3310  GATTTAACATTGATTTCAAGCATTAATTGCCATTAAACTGTTTATGTTAAGAGGATTGCACTGGGGGCCATGGC  3383

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3384  TCATGCCTGTAATTCCAGCACTTTGAGAGGCAAAGACAGGTAGGTCACTGGAGCTCACGAGTTTGAGAACAGCC  3457

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3458  TAGCCAACAGATGGGAGCTACTTTTCCCAGCCTTTATTTTCTTTTTCTTGTTTTTTTTTTGAGATGGAGTCTTG  3531

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3532  CTCTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCTCCTCCCAGGTTCAAGCAAT  3605

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3606  TCTCCTGCCTCAGTCTCCCAAGTAGCTGACACTACAGTTGTGTGCCACCACACCTGGGTAATTTTTTGTGTTTT  3679

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3680  TAGTAGAGACTGGGTTTCACCGTGTTAGCCAGAATGGTCTCTATCTTCTGACTTTATGATCCACCCGACTCCAC  3753

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3754  CTCCCAAAGTGCTGAGATTACAGGAGTGAGCCACTGTGCCTGGCCTGTTTTTTGTTTCTTTAACAAAAAGTTAT  3827

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3828  AGAGACTTCTATGAGTATTGTACCGAATCTAAATCACAATTGAGTATATAATCATTGAGCGATATTCATTTTTC  3901

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3902  CAATCAGTATGGGATTTATATCTATTTATACATGTTTTTAATCATTTTGATCAATGTTTATAGATTTCAAGGTA  3975

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3976  CAAACCTCACTTTTTATGTTTATTCCTAAATATTTCTTACTTTAAGTTCTTTAGCAAATGGAATTGGTTTTTAA  4049

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4050  TTTTCTTTTAAAATTATTTATTGTTAATGTATGGAAATTCAACTAATTTTTGGTGCTGTTATTCTATTCTGCAA  4123

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4124  ATAAACTGAATGTGTTTGTTAGTTCCAGTTGCATTTTGGCTGACTCTTTGTGATTTTCTTTACAGAAGGTCATG  4197

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4198  TCATCTACAAACAAATAAAATTTGACTTCTTTCTTTCTGATTTGGATGAGTTTGATTTCTTTTGCTATTTCATT  4271

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4272  GTTCTGGCTAGGACAGCCAGTATTGATTGAATAGAAGGGGTGAGAGCATTCTTGCATCATGTGAGATCCTACAG  4345

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4346  GAAAAGCATTCCGTTTTCCCTGATTGGTTATTTCTGCTGTGGTCATTTCATGGATGGTCTTTGTATTGCTGAGG  4419

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4420  TAAATTTTCTTCTGTATCTATTTTGTGTGGGATTTCTATGATGACTTGATGTTGACTTTTGTGAAATGCTTTTT  4493

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4494  CTCCATGTATTGAGATGATGTGGTTTTCATCTTTCATTGTGTTCAAGTGGTATATCACATTGATTTGCTTGACT  4567

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4568  ATGTTGAACCATCCTTGCATCCCAGAAATAAGTGGCACTTGCATATCTACAATCCTTTTAATATCCTCTTGAAT  4641

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4642  ACAGTTCGCTAGTACAAGGGGTCTTCAAGAAGTTCATGAAAAAAATACATATTATGTGAAAATTGCACATGATG  4715

Query 1528  --------------------------------------------  1527
                                                        
Sbjct 4716  TCACATTTTCTGCACCAAAATAAACTGGCACAAATCTGTTATAA  4759

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