Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05120
Subject:
XM_011527262.2
Aligned Length:
2176
Identities:
1307
Gaps:
671

Alignment

Query    1  ATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||.|||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148
            |||||||||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGACCCTGCTCAGAGGACTCTTTACAGGGATGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTG  222
            |||||||||||||||||||.|||||.|..|||||||||||||||||||||||||.|.|||||||||||||||||
Sbjct  149  CTTCCAAATGCATGATGAAGACATTCTTCTCAACAGGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTG  222

Query  223  CAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTT  296
            ||.||||||||||||.||||||||||||..|||||||.||||.|||||||||||||||||||||.|||...|||
Sbjct  223  CAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTT  296

Query  297  TCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAG  370
            |||||||.||||||||||||||||||||||||.||||||||||||||||||.|||.||||||||.|||||||||
Sbjct  297  TCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAG  370

Query  371  ACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTG  444
            .||.|.|||||||||||||||||||||||||||.||||||||.||||||||.||.|||.|||||||.||||.||
Sbjct  371  GCCAACATGATCAAAGGCATGCTGGAAACAAGCATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTG  444

Query  445  C-----------------------GAAG----------------------------------------------  449
            |                       ||||                                              
Sbjct  445  CCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTC  518

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct  519  AGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCC  592

Query  450  ---------------------------------ACATAGGAGAA------------------------------  460
                                             ||||..|||||                              
Sbjct  593  ATTCTTCATTACTCACACAAAAACGGAATGTACACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAA  666

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  667  TCCTTTAATTGTAGCTCACTTTTAAAAAAACATCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATGT  740

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct  741  ATATGGCAAGGTATTTAATCAGAAGCGATACCTTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTACA  814

Query  461  ------------------------------------------------------------TTCATACTGGAGAG  474
                                                                        |||||||||.|||.
Sbjct  815  AGTGTAATGAGTGTGGCAAGATCTTTGGTCACAATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGAC  888

Query  475  AAACCTTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCA  548
            ||||||||..||||||||||||||||.||||||||||||.||||||||||.|||||||.|||||.|||||||.|
Sbjct  889  AAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTTA  962

Query  549  TACTGGAGAGAAACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGCATG--ATTCACACCTGGCAAAACA  620
            ||||||||.||||||||||||||||||||||||.|||||.|||||.|  ||||  |||||.||||.||||||||
Sbjct  963  TACTGGAGGGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTCA--CATGTAATTCATACCTAGCAAAACA  1034

Query  621  TACTAGAATTCACAGGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCC  694
            |||||.||||||||..|||||.||||.|||||..||||||||||||||||||||||||.|||.|....||||||
Sbjct 1035  TACTATAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCC  1108

Query  695  TTGCATGTCATCATAGAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTT--AGTC  766
            |||||.|.||||.|||...||||||||||||||||||||||.|.|||.|.||.||||  ||.|..|||  ||||
Sbjct 1109  TTGCACGCCATCGTAGGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTG--AAAAAGTTTTCAGTC  1180

Query  767  AGACATCACACCTTGTGTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAG  840
            ..|.||||||.||||.....|||.|.||..|.|||||||||||||||||.|||||||||||.|..||||.||||
Sbjct 1181  GCAAATCACATCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAG  1254

Query  841  ACCTTCGCTCGAAATTCAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGA  914
            .|.||.||....||||||..|||.|.||..||||....|.||||.||||.||||||.||.||.|||||||||||
Sbjct 1255  GCTTTTGCATATAATTCATACCTGGCAAAACATAGTATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGA  1328

Query  915  ATGTGGCAAGGTTTTTAAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACA  988
            ||||||||||||||||||.||||.|.|||||||||||.|.||||.||||.||||.||||.|||||||||.||||
Sbjct 1329  ATGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACGCCATCATAGACTTCATACTGCAGAGAAACCATACA  1402

Query  989  GATGTGAAGAATGCGACAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAG  1062
            .||||||||||||.||||||||||||||..||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1403  AATGTGAAGAATGTGACAAAGTTTTCAGGTGCAAATCACACCTTGAAAGACATAGGAGGATTCATACTGGAGAG  1476

Query 1063  AAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCA  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||.|.|||.|||||||||||||||||||
Sbjct 1477  AAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTACAGAACATCAGAGAGTTCA  1550

Query 1137  TACTGGAGAGAGACCTTACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATC  1210
            |||||||||||.|||.||||..|||||||||||||||||||||||||||||||||||..||||.||||||||||
Sbjct 1551  TACTGGAGAGAAACCATACATGTGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCAAACCTTGCATGTCATC  1624

Query 1211  AAAAACTTCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTT  1284
            |.|||||||||||||.||||||||..|||.||||||||||||||||.|||||||.||.|||||||||||||.|.
Sbjct 1625  ATAAACTTCATACTGCAGAGAAACCGTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTCGCAAATCACACATG  1698

Query 1285  GAAAGACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTGT--GGTGATTGTGGTA-AAGCCTTTAATTC  1355
            |||||||||||||||||||||||.|||||||||||..||||.|||  |||  |||||  | |||.||||     
Sbjct 1699  GAAAGACATAGGAGGATTCATACTGGAGAGAAACCGTACAAATGTAAGGT--TTGTG--ACAAGGCTTT-----  1763

Query 1356  ACC-------TTCACACCTTATTAGG-----CATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATC  1417
             ||       |||||||||     ||     |||||||||.|.|||||||||.|||||.|||||||.|||.||.
Sbjct 1764  -CCGGAGGGATTCACACCT-----GGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATG  1831

Query 1418  AGTGTGGCAAGGTCTTTAGTCTGAGGTCACTC-CTTGCAGAA--CATCAGAAAATTCCTTTTGGAGACAATTGT  1488
            |||||||||||..|||..|||.||..||| || |||  |.||  ||||..|...|||.|..||||||.||...|
Sbjct 1832  AGTGTGGCAAGACCTTCCGTCAGACATCA-TCGCTT--ATAATCCATCGTAGGCTTCATACTGGAGAGAAACCT  1902

Query 1489  TTCAAGTGCAATGAGTATAGCAA-----------------------------ACCATCA-AGCATTAAT-----  1527
            |.||||||.|||||||.|.||||                             ||||||| ||..||.||     
Sbjct 1903  TACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATACCATCATAGGCTTCATAGTGG  1976

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1977  AGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACACCTTGCACAGCATCAGAGAG  2050

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2051  TTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATAC  2124

Query 1528  ------------------------------  1527
                                          
Sbjct 2125  CATCATAGACTTCATAGTGGAGAGAAACCT  2154

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