Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05120
Subject:
XR_002958276.1
Aligned Length:
2581
Identities:
1527
Gaps:
1054

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGAGTTTCGCTCTGTTTTATGTGTGCTTCCCAGTCCTGTGGTGCTGCTATACCGGGGACGTTGAGTCCCCACAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCTGGAAATTGCGGCCCCTCTTTCTCAACCCAGAGCAAATTGAGACGTCCGGGTGAGAGTCCAGTCTCACTCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCCTTCAGGCTGTGAGTGCAGTCTCCTGATCTTGGCTCACTGCAACCTCTGTCTCCTGGGTTCAAGTGATTCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTGCCTCAGCCTACCAAGTAGCTGAGATACAGGATTGACTTCTAAAGACTCTTGGTACCTGAGGAAGAAACCC  296

Query    1  --------------------------------ATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCC  42
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGAAGAGGAAGAGGAAAGCAAAGGAGTCGGGGATGGCTCTTTCTCAGGGTCTACTGACATTCAGGGATGTGGCC  370

Query   43  ATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGA  116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGA  444

Query  117  GAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAG  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAG  518

Query  191  GCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAG  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAG  592

Query  265  GAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCAT  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCAT  666

Query  339  GACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAG  412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAG  740

Query  413  GTCAGCTTGAATCAAGATTTCATTTGCATTTGCGAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAA  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTCAGCTTGAATCAAGATTTCATTTGCATTTGCGAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAAA  814

Query  487  TGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAA  560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAA  888

Query  561  ACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACA  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGCATGATTCACACCTGGCAAAACATACTAGAATTCACA  962

Query  635  GGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCAT  708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCAT  1036

Query  709  AGAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTGT  782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGAAGTCATACTGGAGAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCACACCTTGT  1110

Query  783  GTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATT  856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTACCATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATT  1184

Query  857  CAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTT  930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAGTCCTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTT  1258

Query  931  AAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGA  1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AAGCAACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGA  1332

Query 1005  CAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTA  1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTA  1406

Query 1079  AGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCT  1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGGTTTGTGACAAGGCTTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCT  1480

Query 1153  TACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGG  1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TACACATGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGG  1554

Query 1227  AGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGA  1300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGA  1628

Query 1301  TTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGG  1374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTTATTAGG  1702

Query 1375  CATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACT  1448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACT  1776

Query 1449  CCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCA  1522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCATCAAGCA  1850

Query 1523  TTAAT---------------------------------------------------------------------  1527
            |||||                                                                     
Sbjct 1851  TTAATTGACATCAGAGTCAAATCAGCATTGACCTGAGTTTGAGTTGACTTAACATTGATTTCAAGCATTAATCG  1924

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1925  ACATTAAACTGTTTATGTTAAGAGGATTGGGCCAGGCGTGGTGTCTCACACCTGTAATCCCAGCACTTTGAGAG  1998

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 1999  GCCAAGACAGATGGAATCTTGCTCTGTCGCCCACGTTGGAGTGCAGTGATGTGATCTCGGTTCACTGCAACATT  2072

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2073  CACCTCCCAGGTTCATGCAATTCTCCTGCCTCAGTCTCCTGAGTAGCTGGGACTACAGGATTGATTTCCAGAGA  2146

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2147  CTTATGTTACTTGAGGAAGACACCAAGAAGGCAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAGGGATACTTG  2220

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2221  ACTTTCAGAGATGTGGCTATAGAGTTCTCTTTGCTGGAGTGGAAACGCCTGGACCCTGCACAGAACGCTTTATA  2294

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2295  CAGGGCTGTGATGTGGGAGAACTACAGGAACCTGGAGTCTGTGGGTGAGGAAAATGTTCCTCCAGACATGAAGA  2368

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2369  ATCTGTCCTTGTGTATCTTGGCTTTTCCTGGTTTTGTATTCTCTTTTGTGATTTTGCCCCATACGTGCTTTTGA  2442

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 2443  TGTACACAGCTGGGATTCCAGGCACGTGCCACCATGCCCAGCATGTTATTTTGTATCTTTAGTGGAGATAGGGT  2516

Query 1528  -----------------------------------------------------------------  1527
                                                                             
Sbjct 2517  TTTGCCATGTTGGCCAGGCTCGTCTCGAACTCCTGACCTCCATACCCACCCGCCTCGGCCTCTAA  2581

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