Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05629
Subject:
NM_001321867.2
Aligned Length:
2375
Identities:
431
Gaps:
1885

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTTATGTGAAGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACGCTTGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTCAGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCGCAGAGGGCTTTGTACA  148

Query    1  -----------------------------------------------------------ATGATGAAGGAGTTC  15
                                                                       ||||||||||||.||
Sbjct  149  GGGAAGTGATGTTGGAGAACTACAGGAACCTGGAAGCTGTGGATATCTCTTCCAAACGCATGATGAAGGAGGTC  222

Query   16  TCATCCACAGCGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTAG  89
            |..||.||||.|||||||||||||||||||||||||||||||||||||||||||.||.|||||.||||||||.|
Sbjct  223  TTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGATATCAAAGTTATCACATTGG  296

Query   90  AGATTTTTGCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGAGGAAAGGAATG  163
            ||||||||||||||||||||||||||||||.||||||.|..|||||||||||||.||||||||.|||||.||||
Sbjct  297  AGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGATATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATG  370

Query  164  GTCACGAAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACCGACATGATCAAAGGCATGCTGGA  237
            |.||.|||||||||||||||.||||.|||.|||||||||||||.|||||||.|||||||||.||||||||||||
Sbjct  371  GCCATGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGA  444

Query  238  AACAAGCCTATTAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCTGAACTCCACATATTTCAGCCTGA  311
            |||||||||||||||||||||||||||||.||||||.||||.|||||||||||||||||||||.||||| .|.|
Sbjct  445  AACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATAATTCAG-ATCA  517

Query  312  ATGG-AAAATTGGTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAATTTTGACATCCCAAAGAATTTCT  384
            |.|| |||||||||||||||.||||||||||||.||...||||..|||...|||..||||||||||||||||||
Sbjct  518  AAGGTAAAATTGGTAATCAATTTGAGAAGTCTACCAGTGATGCTCCCTCGGTTTCAACATCCCAAAGAATTTCT  591

Query  385  TGTAGTCCCAAAACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATTCTTCATTACCCATACAAAAATT  458
            ..|||.|||.|||.||.|||||||||||||||||||||||||||||...||||||||.|||.|..||||||| .
Sbjct  592  CCTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATTCCCCGAATTCTTCACTACTCCCACAAAAA-C  664

Query  459  GGGAAGTACACATGAGAGAAAAATCTTTCCAATG----------------------------------------  492
            .|||||||.|||||||||||||||||||||||||                                        
Sbjct  665  AGGAAGTATACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTA  738

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  739  AGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAA  812

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  813  GCAATACCTTACATGCCATTGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGAAAGTCCT  886

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  887  TCAGTCAGGTATCATCCCTTACATGCCATCGTAGACTTCACACTGCAGTAAAATCTCACAAGTGTAATGAGTGT  960

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  961  GGCAAGATCTTTGGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAAAAACCTTACAAGTG  1034

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1035  TAATGAATGTGACAAAGCTTTTAATCAGCAATCAAACCTTGCACGTCATCGTAGAATTCATACTGGAGAGAAAC  1108

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1109  CTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGGAAATCAACCCTTGAGTCACATAAGAGAATTCATACT  1182

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1183  GGAGAGAAACCATACAAATGTAAGGTTTGTGACACAGCTTTCACATGGAATTCTCAGCTGGCAAGACATAAAAG  1256

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1257  AATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCACAAGTCATCCCTTGTAT  1330

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1331  GCCATCATAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTCTGTGACAAGGCTTTTGCGTGGAATTCA  1404

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1405  CACCTGGTAAGACATACTAGAATTCATAGTGGAGGAAAACCTTACAAGTGTAATGAATGTGGGAAGACCTTTGG  1478

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1479  TCAAAATTCAGATCTTCTAATTCATAAGTCAATTCATACTGGAGAGCAACCTTACAAATATGAAGAATGTGAAA  1552

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1553  AGGTTTTCAGTTGTGGATCAACCCTTGAGACACATAAGATAATTCACACCGGAGAGAAACCATACAAATGTAAG  1626

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1627  GTTTGTGACAAGGCTTTTGCGTGTCATTCCTATCTGGCAAAACATACTAGAATTCATAGTGGAGAGAAACCTTA  1700

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1701  CAAGTGTAATGAGTGCAGCAAGACCTTCCGTCTGAGGTCATACCTTGCAAGCCATCGCAGAGTTCATAGTGGTG  1774

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1775  AGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCAGAGGTCATACCTTCATTGCCATCGTAGACTT  1848

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1849  CATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCACAAGCCATCCCTTGTTCACCA  1922

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1923  TCGTAGACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACC  1996

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1997  TGGCAAGACATACCAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGGAAGGCTTTTAATCAA  2070

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2071  CAATCACAACTTTCACTTCATCATAGAATTCATGCTGGGGAGAAACTTTACAAATGTGAAACATGTGACAAAGT  2144

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2145  TTTCAGTCGCAAATCACACCTTAAAAGACATAGGAGAATTCATCCTGGAAAGAAACCATACAAATGTAAGGTTT  2218

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2219  GTGACAAGACTTTTGGGAGTGATTCACACCTGAAACAACATACTGGACTTCACACTGGAGAGAAACCTTACAAG  2292

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2293  TGTAATGAGTGTGGCAAAGCCTTTAGCAAGCAGTCAACACTTATTCACCATCAGGCAGTTCATGGTGTAGGGAA  2366

Query  493  -------  492
                   
Sbjct 2367  ACTTGAC  2373

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