Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05629
Subject:
NM_001369764.1
Aligned Length:
2119
Identities:
439
Gaps:
1634

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query    1  --------------------------------------------ATGATGAAGGA----GTTCTCATCCACAGC  26
                                                        ||.||  ||||    |.||   |||...|.
Sbjct   75  GGACCCTGCTCAGAGGACTCTTTACAGGGATGTGATGCTGGAGAATTAT--AGGAACCTGGTC---TCCCTGGG  143

Query   27  GCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTAGAGATTTTTGCT  100
            |||||||||||||||||.|.|||||||||||||||||||||||||.|.|||||||||||||.||||||||||||
Sbjct  144  GCAAGGCAATACAGAAGCGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCT  217

Query  101  TCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGAGGAAAGGAATGGTCACGAAGCA  174
            |||||.|||||||||||||.||||||..|||..|||||||||||.|||||||.||||..||||..||.|.||||
Sbjct  218  TCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTTTCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCA  291

Query  175  CCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACCGACATGATCAAAGGCATGCTGGAAACAAGCCTAT  248
            |||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||.|||
Sbjct  292  CCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCATAT  365

Query  249  TAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCTGAACTCCACATATTTCAGCCTGAATGGAAAATTG  322
            |||||||||||||||||..||||||||||||||||||||||||||.||||||||||||||||||.|||||||||
Sbjct  366  TAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTG  439

Query  323  GTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAATTTTGACATCCCAAAGAATTTCTTGTAGTCCCAAA  396
            ||||||||||||||||||||||||.||||||.||||.|.|||..||||||||||||||||.||||||.||||||
Sbjct  440  GTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAA  513

Query  397  ACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATTCTTCATTACCCATACAAAAATTGGGAA-GTACAC  469
            ||||.||||||||||||.|||||.|||||||||||||||||||||||||.||.|||||||  .|||| ||||||
Sbjct  514  ACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAA--CGGAATGTACAC  585

Query  470  ATGAGAGAAAAATCTTTCCAATG---------------------------------------------------  492
            |||||||||||||||||||||||                                                   
Sbjct  586  ATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAATCCTTTAATTGTAGCTCACTTTTAAAAAAACATCA  659

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  660  GATAACCCACTTAGAAGAGAAACAATGTAAATGTGATGTATATGGCAAGGTATTTAATCAGAAGCGATACCTTG  733

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  734  CATGCCATCGTAGATCTCACATTGATGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGATCTTTGGTCACAAT  807

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  808  ACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGACAAACCTTATGAATGTGAAGAATGTGACAAAGTTTT  881

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  882  CAGTCGCAAATCACACCTTGAAACACATAAGATAATTTATACTGGAGGGAAACCATACAAATGTAAGGTTTGTG  955

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  956  ACAAAGCTTTCACATGTAATTCATACCTAGCAAAACATACTATAATTCACACTGGAGAGAAACCTTACAAGTGT  1029

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1030  AATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCCTTGCACGCCATCGTAGGCTTCATACTGGAGAGAAACC  1103

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1104  TTATGAATGTGAAGAATGTGAAAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAAGAGGATTCATACTG  1177

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1178  GAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCATATAATTCATACCTGGCAAAACATAGTATA  1251

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1252  ATTCACACTGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACG  1325

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1326  CCATCATAGACTTCATACTGCAGAGAAACCATACAAATGTGAAGAATGTGACAAAGTTTTCAGGTGCAAATCAC  1399

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1400  ACCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGG  1473

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1474  AGTGATTCATGCCTTACAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACATGTGTAATGAATGTGGCAA  1547

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1548  GGTTTTTAGTACAAAAGCAAACCTTGCATGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAATGTGAAG  1621

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1622  AATGTGAGAAAGTTTTCAGTCGCAAATCACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAAACCGTAC  1695

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1696  AAATGTAAGGTTTGTGACAAGGCTTTCCGGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGAGA  1769

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1770  GAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCAGACATCATCGCTTATAATCCATCGTAGGCTTC  1843

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1844  ATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATACCAT  1917

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1918  CATAGGCTTCATAGTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACACCT  1991

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1992  TGCACAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGA  2065

Query  493  -----------------------------------------------  492
                                                           
Sbjct 2066  TGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAGAGAAACCT  2112

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.