Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05629
Subject:
XM_005258909.4
Aligned Length:
2504
Identities:
434
Gaps:
2014

Alignment

Query    1  ATGATGAAGGAGTTCTCATCCACAGCGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGA  74
            ||||||||||||.|||..||.||||.|||||||||||.||||||||||||||||||||||||||||||||||.|
Sbjct    1  ATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGACATCA  74

Query   75  AAGTCATCACATTAGAGATTTTTGCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAG  148
            ||||.||||||||.||||.||||||||||||||||||||||||||.|||||||||.|||||||||||||.||||
Sbjct   75  AAGTTATCACATTGGAGACTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGTGTCAAG  148

Query  149  AAGAGGAAAGGAATGGTCACGAAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACCGACATGAT  222
            ||||.|||||.|||||.||.||||||||||.||||.||||.|||.|||||||||||||.|||||||.|||||||
Sbjct  149  AAGATGAAAGAAATGGCCATGAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGAT  222

Query  223  CAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCTGAACTCCA  296
            ||.|||||||||||||||||||||||||||||||||||||||||.||||||.||||.|||||||||||||||||
Sbjct  223  CACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCA  296

Query  297  CATATTTCAGCCTGAATGG-AAAATTGGTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAATTTTGACA  369
            |||||||||| .|.||.|| .||||||.|||||||.||||||||||||.||...||||.||||.|.|||..|||
Sbjct  297  CATATTTCAG-ATCAAAGGTGAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTTCAACA  369

Query  370  TCCCAAAGAATTTCTTGTAGTCCCAAAACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATTCTTCATT  443
            ||||||||||||||.|||||.|||.|||.||.|||||||||||||||||||||||||.||||..||||||||||
Sbjct  370  TCCCAAAGAATTTCCTGTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATT  443

Query  444  ACCCATACAAAAATTGGGAAGTACACATGAGAGAAAAATCTTTCCAATG-------------------------  492
            ||.|..||||||| ..|||||||||||||||||||||||||||||.|||                         
Sbjct  444  ACTCCCACAAAAA-CAGGAAGTACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTTTAAT  516

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  517  TGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAA  590

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  591  GCTCTTTAATCACAAGCAATACCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAAAG  664

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  665  AGTGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACCTTAC  738

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  739  AAGTGTAATGAGTGTGGCAAGGTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGA  812

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  813  GAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGACTTC  886

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  887  ATACTGGAGTGAAACCTTACAAATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAACCAT  960

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  961  ACTAGAATTCATAGTGGAGAGAAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAAGCCT  1034

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1035  TGCACGTCATCATATACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCAGA  1108

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1109  AATCAACCCTTGAGAGACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATACAGCT  1182

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1183  TTCACGTGTAATTCACAGCTGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTG  1256

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1257  TCGCAAGACCTTCAGCCGCAGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTACAAGT  1330

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1331  GTAATCAGTGTGGCAATACCTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGAGAAA  1404

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1405  TCTTACAAATGTACGGTTTGTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTCACAC  1478

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1479  TGCAAAGAAACCTTACAAGTGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCATCGTA  1552

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1553  GACTTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCTTGAG  1626

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1627  TCACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGAATTC  1700

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1701  ACAGCTGGCACGACATACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCA  1774

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1775  GTTACAAGTCATCACTTGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGAC  1848

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1849  AAGGCTTTCGTGTGTCGTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGTGTAA  1922

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1923  TGAGTGCAGCAAGACCTTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAACCTT  1996

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1997  ACAAGTGTAGTGAGTGCAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAGTGGT  2070

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2071  GAGAAACCTTACAAGTGTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTAGACT  2144

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2145  TCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGAC  2218

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2219  ATATTAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATCACAC  2292

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2293  CTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCAGTCG  2366

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2367  CAAATCACACCTTAAAAGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAG  2440

Query  493  --------------------------------------------------------------  492
                                                                          
Sbjct 2441  CCTTTAGTGACCGGTCAACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGAT  2502

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.