Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05629
Subject:
XM_005259451.5
Aligned Length:
2155
Identities:
443
Gaps:
1664

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query    1  -------ATG-ATGAAGGAGTTCTCATCCACAGCGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAA  66
                   ||| ||||.||||||||||||.|.||.|.||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTTCCAAATGCATGATGGAGTTCTCATCAATAGGGAAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAA  222

Query   67  AGACATGAAAGTCATCACATTAGAGATTTTTGCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCA  140
            ||||..|.|||||||||||||.||||.|.||||||||||||||||||||||||.||||||.||||||.||||||
Sbjct  223  AGACTGGCAAGTCATCACATTGGAGAATGTTGCTTCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCA  296

Query  141  GTGGCAAGAAGAGGAAAGGAATGGTCACGAAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACC  214
            ||||||||||||.||||..|||||.||.||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct  297  GTGGCAAGAAGATGAAACAAATGGCCATGAAGCACCCATGACAGAAATCAAAGAGTTGACGGGTAGTACAGACC  370

Query  215  GACATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCT  288
            .|.|||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||.|||||||||
Sbjct  371  AATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGCCT  444

Query  289  GAACTCCACATATTTCAGCCTGAATGGAAAATTGGTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAAT  362
            |||||.||||||||||||||.|||.|||||||||||||||||.|||||||||||||||.||||||.||||.|.|
Sbjct  445  GAACTGCACATATTTCAGCCCGAAGGGAAAATTGGTAATCAACTTGAGAAGTCTATCAACAATGCTTCCTCAGT  518

Query  363  TTTGACATCCCAAAGAATTTCTTGTAGTCCCAAAACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATT  436
            ||..|||||||||||||||||||||||.||||||||||.||||||||||||||||||||||||||.|.||||||
Sbjct  519  TTCAACATCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATTTCTAATAACTATGGGAATAATTTCTTCCATT  592

Query  437  CTTCATTACCCATACAAAAATTGGGAAGTACACATGAGAGAAAAATCTTTCCAATG------------------  492
            |||||||||.||.|||.||| ..|||.|||||||.||.|||||||||||||||||.                  
Sbjct  593  CTTCATTACTCACACAGAAA-CAGGATGTACACAGGAAAGAAAAATCTTTCCAATTTAATGAGAGTGGCAAATC  665

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  666  CTTTAATTGTAGCTCACTCTTTAAAAAACATCAGATAATTCATCTAGGAGAGAAACAATATAAATGTGATGTAT  739

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  740  GTGGCAAAGACTTTAATCAGAAGCGATACCTTGCACACCATCGTAGATGTCACACTGGTGAGAAACCTTACATG  813

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  814  TGTAATAAATGTGGCAAGGTTTTTAATAAAAAAGCATACCTTGCACGTCATTATAGACGTCATACTGGAGAAAA  887

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  888  ACCTTACAAGTGTAATGAGTGTGGCAAGACGTTCAGTGACAAGTCAGCCCTCTTAGTTCACAAGACAATTCATA  961

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  962  CTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCAT  1035

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1036  AGAGTTCATACTGGAGAGAAACCTTACCAATGTAAAGAATGTGACAAAGTTTTCAGTCGCAAATCATACCTTGA  1109

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1110  AAGACATAGGAGAATTCACACTGGTGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACATGATT  1183

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1184  CACACCTGGCACAGCATATTGTAATTCACACTAGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACGTTT  1257

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1258  GGTGAAAATTCAGCCCTCTTAGTTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGG  1331

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1332  CAAGGTTTTCAATCAACAATCAAACCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTA  1405

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1406  AAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCA  1479

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1480  TACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGG  1553

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1554  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCA  1627

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1628  TTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAAAGTTTTAATCACAAATCAAGCCTTGCATAT  1701

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1702  CATCATAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAGGACACAGTCACA  1775

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1776  ACTTGCATGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAATA  1849

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1850  TCAAATCACACCTTGAAATACATAGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAGGGTTTGCGACAAG  1923

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1924  GCTTTTGGGCGTGATTCATACCTTGCACAACATCAGAGAGTTCACACTGGAGAGAAACCATACAAATGTAAGGT  1997

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1998  TTGTGACAAGGCTTTCAAGTGTTACTCACACCTGGCACAACATACTAGAATTCATACTGGAGAGAAACCTTTCA  2071

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2072  AGTGTAGTGAGTGTGGCAAAGCCTTTCGTGCACAGTCAACACTTATTCACCATCAGGCAATCCATGGTGTAGGG  2145

Query  493  ---------  492
                     
Sbjct 2146  AAACTTGAC  2154

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.