Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05629
Subject:
XR_935832.3
Aligned Length:
4230
Identities:
434
Gaps:
3740

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGATTAACGCAAACCCGGAAGCGGATCGGGTGGAGTGAAGGTCACGTCGCCATGGATTGATTTCTAAAGACTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGATATCTCTTCC  148

Query    1  ------ATGATGAAGGAGTTCTCATCCACAGCGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAG  68
                  ||||||||||||.|||..||.||||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct  149  AAACACATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAG  222

Query   69  ACATGAAAGTCATCACATTAGAGATTTTTGCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGT  142
            ||||.|||||.||||||||.||||.||||||||||||||||||||||||||.|||||||||.||||||||||||
Sbjct  223  ACATCAAAGTTATCACATTGGAGACTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGT  296

Query  143  GGCAAGAAGAGGAAAGGAATGGTCACGAAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACCGA  216
            |.||||||||.|||||.|||||.||.||||||||||.||||.||||.|||.|||||||||||||.|||||||.|
Sbjct  297  GTCAAGAAGATGAAAGAAATGGCCATGAAGCACCCACGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAA  370

Query  217  CATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCTGA  290
            ||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||.||||.|||||||||||
Sbjct  371  CATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGA  444

Query  291  ACTCCACATATTTCAGCCTGAATGG-AAAATTGGTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAATT  363
            |||||||||||||||| .|.||.|| .||||||.|||||||.||||||||||||.||...||||.||||.|.||
Sbjct  445  ACTCCACATATTTCAG-ATCAAAGGTGAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTT  517

Query  364  TTGACATCCCAAAGAATTTCTTGTAGTCCCAAAACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATTC  437
            |..|||||||||||||||||.|||||.|||.|||.||.|||||||||||||||||||||||||.||||..||||
Sbjct  518  TCAACATCCCAAAGAATTTCCTGTAGGCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTC  591

Query  438  TTCATTACCCATACAAAAATTGGGAAGTACACATGAGAGAAAAATCTTTCCAATG-------------------  492
            ||||||||.|..||||||| ..|||||||||||||||||||||||||||||.|||                   
Sbjct  592  TTCATTACTCCCACAAAAA-CAGGAAGTACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCC  664

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  665  TTTAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATG  738

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  739  TGGCAAGCTCTTTAATCACAAGCAATACCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGT  812

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  813  GTAAAGAGTGTGGAAAGTCCTTCAGTTACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAA  886

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  887  CCTTACAAGTGTAATGAGTGTGGCAAGGTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATAC  960

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct  961  TGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAA  1034

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1035  GACTTCATACTGGAGTGAAACCTTACAAATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCA  1108

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1109  AACCATACTAGAATTCATAGTGGAGAGAAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATC  1182

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1183  AAGCCTTGCACGTCATCATATACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCA  1256

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1257  GTCAGAAATCAACCCTTGAGAGACATAAGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGAT  1330

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1331  ACAGCTTTCACGTGTAATTCACAGCTGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAA  1404

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1405  TGAGTGTCGCAAGACCTTCAGCCGCAGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTT  1478

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1479  ACAAGTGTAATCAGTGTGGCAATACCTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTA  1552

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1553  GAGAAATCTTACAAATGTACGGTTTGTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAAT  1626

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1627  TCACACTGCAAAGAAACCTTACAAGTGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTC  1700

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1701  ATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCT  1774

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1775  CTTGAGTCACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTG  1848

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1849  GAATTCACAGCTGGCACGACATACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGA  1922

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1923  CCTTCAGTTACAAGTCATCACTTGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTT  1996

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 1997  TGTGACAAGGCTTTCGTGTGTCGTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAA  2070

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2071  GTGTAATGAGTGCAGCAAGACCTTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGA  2144

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2145  AACCTTACAAGTGTAGTGAGTGCAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCAT  2218

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2219  AGTGGTGAGAAACCTTACAAGTGTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCG  2292

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2293  TAGACTTCATACTGGAGAGAAATCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGG  2366

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2367  CAAGACATATTAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAA  2440

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2441  TCACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTT  2514

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2515  CAGTCGCAAATCACACCTTAAAAGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTG  2588

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2589  GCAAAGCCTTTAGTGACCGGTCAACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATAT  2662

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2663  AATGATTGTCACAAAGTCTTCAGTAACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATC  2736

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2737  TTCTGAGTGTAATAAATGTGGCATGTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTG  2810

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2811  GAGAGAAACCTTACAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACAGGAGAAT  2884

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2885  TCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGAC  2958

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 2959  ATCAGAGAATCCATACTGGACAGAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTC  3032

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3033  CTTGCAGAACATGAGAAAATTCATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGCCTGG  3106

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3107  GAAACATGGTGAGACCCCCGTTTCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTAT  3180

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3181  CAACTACTGTGGAGTCTGCAGTGGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATG  3254

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3255  CTACTGCACTCCAGCATGGTTGACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACA  3328

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3329  GGAATAATGAAGTCATTGATAGTTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAA  3402

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3403  TGAATAACTTATTTTGAGTTGTGACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACAT  3476

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3477  CAGTTTTACAGAAAAAAAGTTAATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCA  3550

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3551  GGAATTCAATAATAGCCTGGTTAACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAG  3624

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3625  TGGTGGGCACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTT  3698

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3699  TCGATGAGCCGGGATCCTGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAAC  3772

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3773  AAAAAGGTCTAGCCCCCTCTCCTCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTT  3846

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3847  CTCACAAGACTTTCAGGATTAAGCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATT  3920

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3921  CGAATGAAAACTGGCAATAAAATCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATA  3994

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 3995  AGGAATTGCACGTGAGATGGCACACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATG  4068

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 4069  TCACTACCATCTGGAGACTTGGACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCA  4142

Query  493  --------------------------------------------------------------------------  492
                                                                                      
Sbjct 4143  TTGGTTGGGTGGGTTCAGTAATAAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGAT  4216

Query  493  ------------  492
                        
Sbjct 4217  TACCTAAATTTC  4228

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.