Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05944
Subject:
NR_148224.1
Aligned Length:
2613
Identities:
1121
Gaps:
1491

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCGCCATCTTTATGAGGAGAATTCTAGCGGCGCTTTCTCCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTT  148

Query    1  -------------------------------------ATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGA  37
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct  149  GGGAACGAGGGGTGAAGCGGCCCAGGTGAGGCTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGA  222

Query   38  TCGACTACAACCCCTGGGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTC  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCGACTACAACCCCTGGGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTC  296

Query  112  CCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCA  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCA  370

Query  186  GTACACCAAGACATTT----------------------------------------------------------  201
            ||||||||||||||||                                                          
Sbjct  371  GTACACCAAGACATTTGGTTACCCACCACTGACGAAGATCCTGGCAAGTTTCTTTGGGGAGCTGCTGGGTCAGG  444

Query  202  --------------------------------------------------------------------------  201
                                                                                      
Sbjct  445  AGATAGACCCGCTCAGGAATGTGCTGGTGACTGTTGGTGGCTATGGGGCCCTGTTCACAGCCTTCCAGGCCCTG  518

Query  202  ------------------GTCATCATCATCGAACCCTTTTTTGACTGCTACGAGCCCATGACAATGATGGCAGG  257
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GTGGACGAAGGAGACGAGGTCATCATCATCGAACCCTTTTTTGACTGCTACGAGCCCATGACAATGATGGCAGG  592

Query  258  GGGTCGTCCTGTGTTTGTGTCCCTGAAGCCGGGTCCCATCCAGAATGGAGAACTGGGTTCCAGCAGCAACTGGC  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGGTCGTCCTGTGTTTGTGTCCCTGAAGCCGGGTCCCATCCAGAATGGAGAACTGGGTTCCAGCAGCAACTGGC  666

Query  332  AGCTGGACCCCATGGAGCTGGCCGGCAAATTCACATCACGCACCAAAGCCCTGGTCCTCAACACCCCCAACAAC  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGCTGGACCCCATGGAGCTGGCCGGCAAATTCACATCACGCACCAAAGCCCTGGTCCTCAACACCCCCAACAAC  740

Query  406  CCCCTGGGCAAGGTGTTCTCCAGGGAAGAGCTGGAGCTGGTGGCCAGCCTTTGCCAGCAGCATGACGTGGTGTG  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCCCTGGGCAAGGTGTTCTCCAGGGAAGAGCTGGAGCTGGTGGCCAGCCTTTGCCAGCAGCATGACGTGGTGTG  814

Query  480  TATCACTGATGAAGTCTACCAGTGGATGGTCTACGACGGGCACCAGCACATCAGCATTGCCAGCCTCCCTGGCA  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TATCACTGATGAAGTCTACCAGTGGATGGTCTACGACGGGCACCAGCACATCAGCATTGCCAGCCTCCCTGGCA  888

Query  554  TGTGGGAACGGACCCTGACCATCGGCAGCGCCGGCAAGACCTTCAGCGCCACTGGCTGGAAGGTGGGCTGGGTC  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TGTGGGAACGGACCCTGACCATCGGCAGCGCCGGCAAGACCTTCAGCGCCACTGGCTGGAAGGTGGGCTGGGTC  962

Query  628  CTGGGTCCAGATCACATCATGAAGCACCTGCGGACCGTGCACCAGAACTCCGTCTTCCACTGCCCCACGCAGAG  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CTGGGTCCAGATCACATCATGAAGCACCTGCGGACCGTGCACCAGAACTCCGTCTTCCACTGCCCCACGCAGAG  1036

Query  702  CCAGGCTGCAGTAGCCGAGAGCTTTGAACGGGAGCAGCTGCTCTTCCGCCAACCCAGCAGCTACTTTGTGCAGT  775
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCAGGCTGCAGTAGCCGAGAGCTTTGAACGGGAGCAGCTGCTCTTCCGCCAACCCAGCAGCTACTTTGTGCAGT  1110

Query  776  TCCCGCAGGCCATGCAGCGCTGCCGTGACCACATGATACGTAGCCTACAGTCAGTGGGCCTGAAGCCCATCATC  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCCCGCAGGCCATGCAGCGCTGCCGTGACCACATGATACGTAGCCTACAGTCAGTGGGCCTGAAGCCCATCATC  1184

Query  850  CCTCAGGGCAGCTACTTCCTCATCACAGACATCTCAGACTTCAAGAGGAAGATGCCTGACTTGCCTGGAGCTGT  923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCTCAGGGCAGCTACTTCCTCATCACAGACATCTCAGACTTCAAGAGGAAGATGCCTGACTTGCCTGGAGCTGT  1258

Query  924  GGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACA---------------------------  970
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 1259  GGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAGAGATGCTGTGTGGGCTGGCAGGATT  1332

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1333  TCCTGCCTCTTTGGATCTCCATCTTCCCATCTGTACAGTGAGGAGTTGGCCCATTAACTCTTGAGTTCATCCAG  1406

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1407  GTTTGATCTGTGACTCTAAGGCTTTGTTCTTCTCTGGCTCTGCCCTGACCTGCTCCATGATCCTCCCTCTGTCA  1480

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1481  GCCTCCCTCTGCCCTCTATACCCAGGGAGGGACTTGGAATGATGTTCTGGGATTCTTTTCTTCTGACTTTGTGT  1554

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1555  TTGTTTTTGTTTTGGATGGATTTTCTCTCTTTCGCCCAGGCTGCGGTGAAGTGGCGCAATCTGGCTCACTGCAA  1628

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1629  CCTCCACCCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCA  1702

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1703  CACCCGGCCAATTTTTGTATTTTTGGTAGAGACGGGGTTTAGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGA  1776

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1777  CCTCAGGTGATCCACCCGTCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCTGGCCTTGT  1850

Query  971  --------------------------------------------------------------------------  970
                                                                                      
Sbjct 1851  TCCTCTGACTTTGATGCAGCTCTAGGTGCTGGATTGGAGCTAACTCTCCTTCCCCGCCTGGTCGTGGGAACCTC  1924

Query  971  ---------------------------------------------------------------------AGGGC  975
                                                                                 |||||
Sbjct 1925  TCTGTCCCCTCCGGAGCCAAGGCCTGCTGGGCCACGAGGCCGTGTTGAGACATGTCCTTCCTCCTCCCCAGGGC  1998

Query  976  TTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTG  1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTG  2072

Query 1050  TTTTGTGAAGGATGAAGCCACGCTCCAGGCCATGGACGAGAAGCTGCGGAAGTGGAAGGTGGAACTCTGGCCC-  1122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||| 
Sbjct 2073  TTTTGTGAAGGATGAAGCCACGCTCCAGGCCATGGACGAGAAGCTGCGGAAGTGGAAGGTGGAACTCTAGCCCT  2146

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2147  GAAGTCACGCCTTGGCCCTGACATCCCCACATGCCCGCAGAGATCCTCTTTGAGTGTCTGTCTTTGTCCAGGTT  2220

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2221  TCAGACATTTCTAGGTTGGGGAAGATGCTATTGGGAAACCTCTTCTCCGTGACACAGAATGTTCTGGGTGGGAG  2294

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2295  CCGCCCTTCTTCATCTTAGAGAACCAAGTGCCTCCTGTCTGAAAGGTGAGGGTGGCCTGACCTGGGCCTCTCCC  2368

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2369  TGCCCCTCCATAGGTGGGTTTGTAGGGTCTTGTGTTGCTTCTGGTCTCTCCAGGCTTGGCTGAGACGGACGGTA  2442

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2443  GACTTCCACCATGTACCGATCACATCCCAGCTCTGCATGGCCCCTGCTAAGGCTCAGGTATAACCTCACCTTCC  2516

Query 1123  --------------------------------------------------------------------------  1122
                                                                                      
Sbjct 2517  CTGGCTCATCTTGGCCTTGGGGAGTTGCCTTTAGGCTTGAGTCCTCAAGCCTCTCCTTTTCGTCCATAATAAAA  2590

Query 1123  -----------------------  1122
                                   
Sbjct 2591  TGTTTAAGTTATTAAGATCCTTA  2613

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