Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06366
Subject:
NM_001243198.3
Aligned Length:
3111
Identities:
2957
Gaps:
153

Alignment

Query    1  ATGGATCGGATGGCCAGCTCCATGAAGCAGGTGCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCGG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGATCGGATGGCCAGCTCCATGAAGCAGGTGCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCGG  74

Query   75  CGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAATA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAATA  148

Query  149  CGCAGGAAGTGGCTGTAAAGGAAAAACACGCCAGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCAGGAAGTGGCTGTAAAGGAAAAACACGCCAGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACAG  222

Query  223  ACCTTCTGGTCTGTTGTCAACCGCCTGCCTCTGTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGTT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACCTTCTGGTCTGTTGTCAACCGCCTGCCTCTGTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGTT  296

Query  297  CCACAAACTCCTCCGAGATGGACACCCGAACGTCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGACA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCACAAACTCCTCCGAGATGGACACCCGAACGTCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGACA  370

Query  371  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAACC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAACC  444

Query  445  AAGATGGAGTACCACACCAAAAATCCCAGGTTCCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGGC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGATGGAGTACCACACCAAAAATCCCAGGTTCCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGGC  518

Query  519  TGGAGAAAGTGACGTGAACAACTTTTTCCAGTTAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAACC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGGAGAAAGTGACGTGAACAACTTTTTCCAGTTAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAACC  592

Query  593  TCTTCCAAACAGTATTCAACTCCCTGGACATGTCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCTC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTCCAAACAGTATTCAACTCCCTGGACATGTCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCTC  666

Query  667  GCCCCGCTGATCCAGGTCATCTTGGACTGCAGCCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCCCCGCTGATCCAGGTCATCTTGGACTGCAGCCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCCA  740

Query  741  CTCCTGCCTCCCAGCTGACACCCTGCAAGGCCACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGATC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTCCTGCCTCCCAGCTGACACCCTGCAAGGCCACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGATC  814

Query  815  TGTTCTACCGCTCCAGCAACCTGCAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGTTCTACCGCTCCAGCAACCTGCAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACCC  888

Query  889  AACTTCCTGCGAGCCTCAGCCCTGTCAGAACATATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCCC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AACTTCCTGCGAGCCTCAGCCCTGTCAGAACATATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCCC  962

Query  963  CGACAGCGAGCCAGTCCTAGAGAAGGATGACCTCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAACA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CGACAGCGAGCCAGTCCTAGAGAAGGATGACCTCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAACA  1036

Query 1037  AGTTTGATGACATCTTTGGCAGTTCATTCAGCAGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAAG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGTTTGATGACATCTTTGGCAGTTCATTCAGCAGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAAG  1110

Query 1111  GATGAGAAGGACCACTTAATTGAGCGACTATACAGAGAGATCAGTGGATTGAAGGCACAGCTAGAAAACATGAA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATGAGAAGGACCACTTAATTGAGCGACTATACAGAGAGATCAGTGGATTGAAGGCACAGCTAGAAAACATGAA  1184

Query 1185  GACTGAGAGCCAGCGGGTTGTGCTGCAGCTGAAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCAGC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GACTGAGAGCCAGCGGGTTGTGCTGCAGCTGAAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCAGC  1258

Query 1259  AGCACCTGCGGCAGCAGGCGGCCGACGACTGTGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGCGG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AGCACCTGCGGCAGCAGGCGGCCGACGACTGTGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGCGG  1332

Query 1333  GAGGACACCGAGAAGGCTCAGCGGAGCCTGTCTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATATAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GAGGACACCGAGAAGGCTCAGCGGAGCCTGTCTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATATAG  1406

Query 1407  CAAGCTAAAGGAGAAGTACAGCGAGCTGGTTCAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGACCA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAAGCTAAAGGAGAAGTACAGCGAGCTGGTTCAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGACCA  1480

Query 1481  AACAGGTGTCCATGGCCAGACAAGCCCAGGTAGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGGAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AACAGGTGTCCATGGCCAGACAAGCCCAGGTAGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGGAG  1554

Query 1555  CGCATCAGTGACCAGGGCCAGCGGAAGACTCAAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTTGC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CGCATCAGTGACCAGGGCCAGCGGAAGACTCAAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTTGC  1628

Query 1629  CACAAGCCAACGGGAGCTTCAGGTTCTGCAAGGCAGCCTGGAAACTTCTGCCCAGTCAGAAGCAAACTGGGCAG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CACAAGCCAACGGGAGCTTCAGGTTCTGCAAGGCAGCCTGGAAACTTCTGCCCAGTCAGAAGCAAACTGGGCAG  1702

Query 1703  CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATTATCT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATTATCT  1776

Query 1777  GCTCTTCGGAAAGAACTGCAGGACACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGCTTGCCAA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCTCTTCGGAAAGAACTGCAGGACACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGCTTGCCAA  1850

Query 1851  AGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTGAACCAGC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTGAACCAGC  1924

Query 1925  TTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCATTTCCAGC  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCATTTCCAGC  1998

Query 1999  TGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTCTCCATTC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTCTCCATTC  2072

Query 2073  CATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCATGGTGCCACCACCTGCCTCAGAGCCCCACCTG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCATGGTGCCACCACCTGCCTCAGAGCCCCACCTG  2146

Query 2147  AGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACCTGGCCTCCCTGGAG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACCTGGCCTCCCTGGAG  2220

Query 2221  GAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATCAAGGCCATCGGCGA  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATCAAGGCCATCGGCGA  2294

Query 2295  GGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAAGGAGATGGCGGCCA  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAAGGAGATGGCGGCCA  2368

Query 2369  CTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGAGGAGATGCTCAGCAAATCCCGAGCAGGAGACACAGGA  2442
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 2369  CTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGA-------------------------------------  2405

Query 2443  GTCAAATTGGAGGTGAATGAAAGGATCCTTGGTTGCTGTACCAGCCTCATGCAGGCTATTCAGGTGCTCATCGT  2516
                                                                                      
Sbjct 2406  --------------------------------------------------------------------------  2405

Query 2517  GGCCTCTAAGGACCTCCAGAGAGAGATTGTGGAGAGCGGCAGGGGTACAGCATCCCCTAAAGAGTTTTATGCCA  2590
                                                      ||||||||||||||||||||||||||||||||
Sbjct 2406  ------------------------------------------GGGTACAGCATCCCCTAAAGAGTTTTATGCCA  2437

Query 2591  AGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCACTGTCATGGTGGAT  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438  AGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCACTGTCATGGTGGAT  2511

Query 2665  GCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCATGAAATTGCTGCTAG  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2512  GCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCATGAAATTGCTGCTAG  2585

Query 2739  CACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCTAACCTAGCCCAGCTGCAGCAGG  2812
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 2586  CACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCCAACCTAGCCCAGCTGCAGCAGG  2659

Query 2813  CCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAATCACAGATCGAAGAG  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660  CCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAATCACAGATCGAAGAG  2733

Query 2887  ACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGATTCTCAGGTTAGGGT  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2734  ACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGATTCTCAGGTTAGGGT  2807

Query 2961  GCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAAGCACTACGAGCTTG  3034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2808  GCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAAGCACTACGAGCTTG  2881

Query 3035  CTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAGTGGTAACCGAAAAA  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2882  CTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAGTGGTAACCGAAAAA  2955

Query 3109  GAA  3111
            |||
Sbjct 2956  GAA  2958

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