Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06366
Subject:
XM_006504415.3
Aligned Length:
3123
Identities:
2535
Gaps:
150

Alignment

Query    1  ATGGATCGGATGGCCAGCTCCATGAAGCAGGTGCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAATA  148
                   .||||.|    .||.|..||                 .|||.||||||.||||||||||||||||||
Sbjct    1  -------ATGGATG----TGAACAAGA-----------------TGACGGTCAGCGTCAATAAGGCCATTAATA  46

Query  149  CGCAGGAAGTGGCTGTAAAGGAAAAACACGCCAGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACAG  222
            |||||||||||||.||.||.||.|||||.|||||.|||||.||.|||||||||||||||||||||||.||.|||
Sbjct   47  CGCAGGAAGTGGCCGTGAAAGAGAAACATGCCAGGACGTGTATTCTGGGCACCCACCATGAGAAAGGAGCGCAG  120

Query  223  ACCTTCTGGTCTGTTGTCAACCGCCTGCCTCTGTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGTT  296
            |||||.||||||||.||||||||.||||||||.||.||||||||..||||.|||||||||||.||.||.|||||
Sbjct  121  ACCTTTTGGTCTGTGGTCAACCGACTGCCTCTCTCCAGCAACGCCATGCTGTGCTGGAAGTTTTGTCACGTGTT  194

Query  297  CCACAAACTCCTCCGAGATGGACACCCGAACGTCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGACA  370
            |||||||||.||.|||||||||||.||||||||.|||||.||||||||||||||||.||||||.||.||.||||
Sbjct  195  CCACAAACTTCTTCGAGATGGACATCCGAACGTGCTGAAAGACTCTCTGAGATACAAAAATGAGTTAAGCGACA  268

Query  371  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAACC  444
            |||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||.
Sbjct  269  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGACAGCTTTGCAGCATCTACCTCAAACTGCTGAGAACA  342

Query  445  AAGATGGAGTACCACACCAAAAATCCCAGGTTCCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGGC  518
            |.|||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||.|||||
Sbjct  343  AGGATGGAGTACCACACCAAAAATCCCAGGTTCCCGGGCAACCTCCAGATGAGTGACCGACAGCTGGATGAGGC  416

Query  519  TGGAGAAAGTGACGTGAACAACTTTTTCCAGTTAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAACC  592
            .||||||||||||||.|||||||||||.|||.|.|||||||||||||||||.|||||||||||||||||.||||
Sbjct  417  CGGAGAAAGTGACGTTAACAACTTTTTTCAGCTCACAGTGGAGATGTTTGATTACCTGGAGTGTGAACTGAACC  490

Query  593  TCTTCCAAACAGTATTCAACTCCCTGGACATGTCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCTC  666
            |||||||.||.||.|||||||||.|||||||||||||.||.|||||||||||..|.||.||.||||||||||||
Sbjct  491  TCTTCCAGACTGTGTTCAACTCCTTGGACATGTCCCGTTCGGTGTCCGTGACCACGGCTGGCCAGTGCCGCCTC  564

Query  667  GCCCCGCTGATCCAGGTCATCTTGGACTGCAGCCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCCA  740
            ||.|||||.||||||||||||.||||||||||.|||||.||||||||||||||||||||.||||||||.|||||
Sbjct  565  GCACCGCTCATCCAGGTCATCCTGGACTGCAGTCACCTCTATGACTACACTGTCAAGCTGCTCTTCAAGCTCCA  638

Query  741  CTCCTGCCTCCCAGCTGACACCCTGCAAGGCCACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGATC  814
            ||||||.||.|||||||||||||||||.||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  639  CTCCTGTCTTCCAGCTGACACCCTGCAGGGCCACCGAGACCGCTTCATGGAGCAGTTCACAAAGTTGAAAGATC  712

Query  815  TGTTCTACCGCTCCAGCAACCTGCAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACCC  888
            ||||..|.||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||.||||||
Sbjct  713  TGTTTCAGCGCTCCAGCAACCTACAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCCGAGAATCCACCC  786

Query  889  AACTTCCTGCGAGCCTCAGCCCTGTCAGAACATATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCCC  962
            ||||||||.||||||||.|||||||||||.||.|||||.|||||||||||||||||.|||||||..||||||||
Sbjct  787  AACTTCCTACGAGCCTCGGCCCTGTCAGAGCACATCAGTCCTGTGGTGGTGATCCCGGCAGAGGTGTCATCCCC  860

Query  963  CGACAGCGAGCCAGTCCTAGAGAAGGATGACCTCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAACA  1036
            .|||||.|||||.|||||.||||||||||||||||||||||||||.|||||.|||||||.|||.||||||||||
Sbjct  861  AGACAGTGAGCCTGTCCTGGAGAAGGATGACCTCATGGACATGGACGCCTCCCAGCAGACTTTGTTTGACAACA  934

Query 1037  AGTTTGATGACATCTTTGGCAGTTCATTCAGCAGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAAG  1110
            |||||||||||.||||||||||.|||||.|||||.||.||.|||||||||||||.|||||||||.|||||||||
Sbjct  935  AGTTTGATGACGTCTTTGGCAGCTCATTGAGCAGCGACCCTTTCAATTTCAACAATCAAAATGGCGTGAACAAG  1008

Query 1111  GATGAGAAGGACCACTTAATTGAGCGACTATACAGAGAGATCAGTGGATTGA-AGGCACAGCTAGAAAACATGA  1183
            ||.||||||||||||||.|||||.||.||.||||||||||||||||||.||| ||| .|||||.||.|||||||
Sbjct 1009  GACGAGAAGGACCACTTGATTGAACGCCTGTACAGAGAGATCAGTGGACTGACAGG-GCAGCTGGACAACATGA  1081

Query 1184  AGACTGAGAGCCAGCGGGTTGTGCTGCAGCTGAAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCAG  1257
            |||.||||||||||||||...||||||||||||||||.|..||.||.||||||||.|||||.||.||.||||||
Sbjct 1082  AGATTGAGAGCCAGCGGGCCATGCTGCAGCTGAAGGGTCGAGTGAGTGAGCTGGAGGCAGAGCTAGCAGAGCAG  1155

Query 1258  CAGCACCTGCGGCAGCAGGCGGCCGACGACTGTGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGCG  1331
            ||||||.||.|.|.||||||....||.|||||.||.||||||||..|.||.|||||.||.||.|.|||||||||
Sbjct 1156  CAGCACTTGGGCCGGCAGGCTATGGATGACTGCGAGTTCCTGCGCACTGAGCTGGATGAACTGAAGAGGCAGCG  1229

Query 1332  GGAGGACACCGAGAAGGCTCAGCGGAGCCTGTCTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATATA  1405
            .||||||||.||||||||.|||||.||||||.|||||||||||||.||.||.||.||.|||||||||.|.||||
Sbjct 1230  AGAGGACACGGAGAAGGCACAGCGCAGCCTGACTGAGATAGAAAGAAAGGCCCAGGCTAATGAACAGAGGTATA  1303

Query 1406  GCAAGCTAAAGGAGAAGTACAGCGAGCTGGTTCAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGACC  1479
            |||||.||||.|||||||||||.||.|||||.||||||||.||||||||||||||||||||.||||||||||||
Sbjct 1304  GCAAGTTAAAAGAGAAGTACAGTGAACTGGTGCAGAACCATGCTGACCTGCTGCGGAAGAACGCAGAGGTGACC  1377

Query 1480  AAACAGGTGTCCATGGCCAGACAAGCCCAGGTAGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGGA  1553
            ||||||||||||.|||||.|.|||||||||||.|||||||||.||||||||||||||||.|..|||||.||.|.
Sbjct 1378  AAACAGGTGTCCGTGGCCCGGCAAGCCCAGGTGGATTTGGAAAGAGAGAAAAAAGAGCTAGCAGATTCCTTTGC  1451

Query 1554  GCGCATCAGTGACCAGGGCCAGCGGAAGACTCAAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTTG  1627
            .||                        |||||||||.||.|.|||.||||||||||.|.|||||||.|||||.|
Sbjct 1452  ACG------------------------GACTCAAGAGCAACAGGATGTTCTAGAGAACCTGAAGCATGAACTGG  1501

Query 1628  CCACAAGCCAACGGGAGCTTCAGGTTCTGCAAGGCAGCCTGGAAACTTCTGCCCAGTCAGAAGCAAACTGGGCA  1701
            ||||.|||..||.||||||.|||||.||.||..|||.|||||||||.|||||||||||||||||.||.| |||.
Sbjct 1502  CCACCAGCAGACAGGAGCTGCAGGTCCTCCACAGCAACCTGGAAACCTCTGCCCAGTCAGAAGCGAAAT-GGCT  1574

Query 1702  G-CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATTAT  1774
            | |..||.||||||||.|.||||||||.|..|.||||.|||.||.||..||||||||.||.|||||.||.||||
Sbjct 1575  GACACAGATCGCCGAGTTGGAGAAGGAACAAGGCAGCTTGGCGACTGTTGCAGCTCAGAGAGAGGAAGAGTTAT  1648

Query 1775  CTGCTCTTCGGAAAGAACTGCAGGA---CACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGCTT  1845
            |.||.||.||   |||.|.||.|||   |||.|||.||||.|||||..|..|..|||||||.||||||||||..
Sbjct 1649  CAGCCCTCCG---AGACCAGCTGGAAAGCACCCAGATCAAGCTGGCTGGGGCCCAGGAATCCATGTGCCAGCAG  1719

Query 1846  GCCAAAGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTGAA  1919
            |..||.|||||..|.||||..||..|||..|||..|||||||||||||||||..|.||||||.||.||.||||.
Sbjct 1720  GTGAAGGACCAGAGGAAAACCCTCTTGGCAGGGATCAGGAAGGCTGCGGAGCGTGAGATACAGGAGGCGCTGAG  1793

Query 1920  CCAGCTTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCATTT  1993
            |||||||||.|||||..|.|||||||||||.||.||.||..||||||||||.|||||||..||||..|||.|||
Sbjct 1794  CCAGCTTGAGGAACCCACCCTCATCAGCTGTGCAGGATCCACAGATCACCTTCTCTCCAAAGTCAGCTCCGTTT  1867

Query 1994  CCAGCTGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTCTC  2067
            ||||||||.|||||||||||||.||.|.|.|.||||||||||||||||||||||||||.||.||||..|||||.
Sbjct 1868  CCAGCTGCCTCGAGCAACTGGAAAAGAACGGCAGCCAGTATCTGGCCTGCCCAGAAGATATTAGTGAGCTTCTG  1941

Query 2068  CATTCCATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCAT-------GGTGCCACCACCTGCCTCA  2134
            ||.||.||.||||||||.||||||||||||.|.|||.|.|    ||||       .|||||||||   |||||.
Sbjct 1942  CACTCGATCACCCTGCTTGCCCACTTGACCGGTGACACTA----TCATCCAGGGGAGTGCCACCA---GCCTCC  2008

Query 2135  GAGCCCCACCTGAGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACCTG  2208
            |.||||||||.|||||.||||||||.|||||.||||||||||.||||||||||||.||||||||.|||||.|||
Sbjct 2009  GGGCCCCACCGGAGCCAGCCGACTCGCTGACGGAGGCCTGTAGGCAGTATGGCAGAGAAACCCTGGCCTATCTG  2082

Query 2209  GCCTCCCTGGAGGAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATCAA  2282
            .|||||||||||||||||||||...|.||||||||.|||..|||||||.|.|||||||||||.||||.|.||||
Sbjct 2083  TCCTCCCTGGAGGAAGAGGGAACTATGGAGAATGCTGACGTCACAGCCCTTAGGAACTGCCTCAGCAGGGTCAA  2156

Query 2283  GGCCATCGGCGAGGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAAGG  2356
            |.||.|.|||||||||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||||||
Sbjct 2157  GACCCTTGGCGAGGAGCTGCTGCCCAGGGGCCTGGACATCAAGCAGGAAGAGCTGGGTGACCTGGTGGACAAGG  2230

Query 2357  AGATGGCGGCCACTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGAGGAGATGCTCAGCAAATCCCGAGCA  2430
            |||||||.||||||||||||||.||||||.|||||||..||.|.||||||||.||.|||||.||.|||||||||
Sbjct 2231  AGATGGCAGCCACTTCAGCTGCCATTGAAGCTGCCACCACCCGGATAGAGGAAATTCTCAGTAAGTCCCGAGCA  2304

Query 2431  GGAGACACAGGAGTCAAATTGGAGGTGAATGAAAGGATCCTTGGTTGCTGTACCAGCCTCATGCAGGCTATTCA  2504
            ||||||||.||||||||..|||||||||||||.||||||||.||||.||||||||||||.||||||||.||..|
Sbjct 2305  GGAGACACGGGAGTCAAGCTGGAGGTGAATGAGAGGATCCTGGGTTCCTGTACCAGCCTGATGCAGGCCATCAA  2378

Query 2505  GGTGCTCATCGTGGCCTCTAAGGACCTCCAGAGAGAGATTGTGGAGAGCGGCAGGGGTACAGCATCCCCTAAAG  2578
            |||||||.|.||||||||.|||||||||||||..|||||.||||||||.|||||||||||.|||||||||||||
Sbjct 2379  GGTGCTCGTTGTGGCCTCCAAGGACCTCCAGAAGGAGATAGTGGAGAGTGGCAGGGGTACTGCATCCCCTAAAG  2452

Query 2579  AGTTTTATGCCAAGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCACT  2652
            |.|||||.||||||||||||||.|||||.|||||.||.||.||.||||||||.|||||.||.||||||||.||.
Sbjct 2453  AATTTTACGCCAAGAACTCTCGGTGGACGGAAGGGCTGATATCCGCCTCCAAAGCTGTTGGTTGGGGAGCTACC  2526

Query 2653  GTCATGGTGGATGCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCATGA  2726
            .|||||||||||||.||||||||.|||||.|||||||.||||||.||.||||||||.|||||||||||.|..||
Sbjct 2527  ATCATGGTGGATGCTGCTGATCTTGTGGTCCAAGGCAAAGGGAAGTTCGAGGAGCTGATGGTGTGTTCACGCGA  2600

Query 2727  AATTGCTGCTAGCACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCTAACCTAGCCC  2800
            .||||||||.||.||.||||||||.|||||||||||||||||||||||..|.||||.|||||..||.||..|||
Sbjct 2601  GATTGCTGCCAGTACTGCCCAGCTCGTGGCTGCATCCAAGGTGAAAGCGAACAAGGGCAGCCTCAATCTGACCC  2674

Query 2801  AGCTGCAGCAGGCCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAATCA  2874
            |||||||||||||||||||.|||||||||||||||||.||||..||.|||||||||||||||||.||||||||.
Sbjct 2675  AGCTGCAGCAGGCCTCTCGAGGAGTGAACCAGGCCACAGCCGCTGTGGTGGCCTCAACCATTTCTGGCAAATCT  2748

Query 2875  CAGATCGAAGAGACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGATTC  2948
            |||||.||.||.|||||||..||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||
Sbjct 2749  CAGATTGAGGAAACAGACAGTATGGACTTCTCAAGCATGACACTGACCCAGATCAAGCGCCAGGAGATGGATTC  2822

Query 2949  TCAGGTTAGGGTGCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAAGC  3022
            .||||||||||||||.|||||.||||||||..||||||||||||||||.|||||.||||||||.|||||.||.|
Sbjct 2823  CCAGGTTAGGGTGCTGGAGCTGGAAAATGACCTGCAGAAGGAGCGTCAGAAACTAGGAGAGCTACGGAAGAAAC  2896

Query 3023  ACTACGAGCTTGCTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAGTG  3096
            ||||||||||.||.||.||.||||||||||||||.|||||.|||||.|||||.||..||||..|.|||||||..
Sbjct 2897  ACTACGAGCTGGCGGGCGTGGCTGAGGGCTGGGAGGAAGGGACAGAAGCATCACCGTCTACTGTCCAAGAAGCA  2970

Query 3097  GTAACCGAAAAAGAA  3111
            .||.|.||.|||||.
Sbjct 2971  ATACCGGACAAAGAG  2985

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