Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06366
Subject:
XM_011240878.2
Aligned Length:
3123
Identities:
2631
Gaps:
48

Alignment

Query    1  ATGGATCGGATGGCCAGCTCCATGAAGCAGGTGCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCGG  74
            |||||.||.|||||||||||||||||||||||..|||||||.||||||||.|||.|||||||.|||||.||.||
Sbjct    1  ATGGACCGAATGGCCAGCTCCATGAAGCAGGTATCCAACCCGCTGCCCAAAGTGTTGAGCCGCCGCGGAGTTGG  74

Query   75  CGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAATA  148
            .||||||.|||||||.||||||||||||||||||||||||||||||||.||||||.||||||||||||||||||
Sbjct   75  TGCTGGGATGGAGGCTGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACGGTCAGCGTCAATAAGGCCATTAATA  148

Query  149  CGCAGGAAGTGGCTGTAAAGGAAAAACACGCCAGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACAG  222
            |||||||||||||.||.||.||.|||||.|||||.|||||.||.|||||||||||||||||||||||.||.|||
Sbjct  149  CGCAGGAAGTGGCCGTGAAAGAGAAACATGCCAGGACGTGTATTCTGGGCACCCACCATGAGAAAGGAGCGCAG  222

Query  223  ACCTTCTGGTCTGTTGTCAACCGCCTGCCTCTGTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGTT  296
            |||||.||||||||.||||||||.||||||||.||.||||||||..||||.|||||||||||.||.||.|||||
Sbjct  223  ACCTTTTGGTCTGTGGTCAACCGACTGCCTCTCTCCAGCAACGCCATGCTGTGCTGGAAGTTTTGTCACGTGTT  296

Query  297  CCACAAACTCCTCCGAGATGGACACCCGAACGTCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGACA  370
            |||||||||.||.|||||||||||.||||||||.|||||.||||||||||||||||.||||||.||.||.||||
Sbjct  297  CCACAAACTTCTTCGAGATGGACATCCGAACGTGCTGAAAGACTCTCTGAGATACAAAAATGAGTTAAGCGACA  370

Query  371  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAACC  444
            |||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||.
Sbjct  371  TGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGACAGCTTTGCAGCATCTACCTCAAACTGCTGAGAACA  444

Query  445  AAGATGGAGTACCACACCAAAAATCCCAGGTTCCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGGC  518
            |.|||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||.|||||
Sbjct  445  AGGATGGAGTACCACACCAAAAATCCCAGGTTCCCGGGCAACCTCCAGATGAGTGACCGACAGCTGGATGAGGC  518

Query  519  TGGAGAAAGTGACGTGAACAACTTTTTCCAGTTAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAACC  592
            .||||||||||||||.|||||||||||.|||.|.|||||||||||||||||.|||||||||||||||||.||||
Sbjct  519  CGGAGAAAGTGACGTTAACAACTTTTTTCAGCTCACAGTGGAGATGTTTGATTACCTGGAGTGTGAACTGAACC  592

Query  593  TCTTCCAAACAGTATTCAACTCCCTGGACATGTCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCTC  666
            |||||||.||.||.|||||||||.|||||||||||||.||.|||||||||||..|.||.||.||||||||||||
Sbjct  593  TCTTCCAGACTGTGTTCAACTCCTTGGACATGTCCCGTTCGGTGTCCGTGACCACGGCTGGCCAGTGCCGCCTC  666

Query  667  GCCCCGCTGATCCAGGTCATCTTGGACTGCAGCCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCCA  740
            ||.|||||.||||||||||||.||||||||||.|||||.||||||||||||||||||||.||||||||.|||||
Sbjct  667  GCACCGCTCATCCAGGTCATCCTGGACTGCAGTCACCTCTATGACTACACTGTCAAGCTGCTCTTCAAGCTCCA  740

Query  741  CTCCTGCCTCCCAGCTGACACCCTGCAAGGCCACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGATC  814
            ||||||.||.|||||||||||||||||.||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct  741  CTCCTGTCTTCCAGCTGACACCCTGCAGGGCCACCGAGACCGCTTCATGGAGCAGTTCACAAAGTTGAAAGATC  814

Query  815  TGTTCTACCGCTCCAGCAACCTGCAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACCC  888
            ||||..|.||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||.||||||
Sbjct  815  TGTTTCAGCGCTCCAGCAACCTACAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCCGAGAATCCACCC  888

Query  889  AACTTCCTGCGAGCCTCAGCCCTGTCAGAACATATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCCC  962
            ||||||||.||||||||.|||||||||||.||.|||||.|||||||||||||||||.|||||||..||||||||
Sbjct  889  AACTTCCTACGAGCCTCGGCCCTGTCAGAGCACATCAGTCCTGTGGTGGTGATCCCGGCAGAGGTGTCATCCCC  962

Query  963  CGACAGCGAGCCAGTCCTAGAGAAGGATGACCTCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAACA  1036
            .|||||.|||||.|||||.||||||||||||||||||||||||||.|||||.|||||||.|||.||||||||||
Sbjct  963  AGACAGTGAGCCTGTCCTGGAGAAGGATGACCTCATGGACATGGACGCCTCCCAGCAGACTTTGTTTGACAACA  1036

Query 1037  AGTTTGATGACATCTTTGGCAGTTCATTCAGCAGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAAG  1110
            |||||||||||.||||||||||.|||||.|||||.||.||.|||||||||||||.|||||||||.|||||||||
Sbjct 1037  AGTTTGATGACGTCTTTGGCAGCTCATTGAGCAGCGACCCTTTCAATTTCAACAATCAAAATGGCGTGAACAAG  1110

Query 1111  GATGAGAAGGACCACTTAATTGAGCGACTATACAGAGAGATCAGTGGATTGA-AGGCACAGCTAGAAAACATGA  1183
            ||.||||||||||||||.|||||.||.||.||||||||||||||||||.||| ||| .|||||.||.|||||||
Sbjct 1111  GACGAGAAGGACCACTTGATTGAACGCCTGTACAGAGAGATCAGTGGACTGACAGG-GCAGCTGGACAACATGA  1183

Query 1184  AGACTGAGAGCCAGCGGGTTGTGCTGCAGCTGAAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCAG  1257
            |||.||||||||||||||...||||||||||||||||.|..||.||.||||||||.|||||.||.||.||||||
Sbjct 1184  AGATTGAGAGCCAGCGGGCCATGCTGCAGCTGAAGGGTCGAGTGAGTGAGCTGGAGGCAGAGCTAGCAGAGCAG  1257

Query 1258  CAGCACCTGCGGCAGCAGGCGGCCGACGACTGTGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGCG  1331
            ||||||.||.|.|.||||||....||.|||||.||.||||||||..|.||.|||||.||.||.|.|||||||||
Sbjct 1258  CAGCACTTGGGCCGGCAGGCTATGGATGACTGCGAGTTCCTGCGCACTGAGCTGGATGAACTGAAGAGGCAGCG  1331

Query 1332  GGAGGACACCGAGAAGGCTCAGCGGAGCCTGTCTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATATA  1405
            .||||||||.||||||||.|||||.||||||.|||||||||||||.||.||.||.||.|||||||||.|.||||
Sbjct 1332  AGAGGACACGGAGAAGGCACAGCGCAGCCTGACTGAGATAGAAAGAAAGGCCCAGGCTAATGAACAGAGGTATA  1405

Query 1406  GCAAGCTAAAGGAGAAGTACAGCGAGCTGGTTCAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGACC  1479
            |||||.||||.|||||||||||.||.|||||.||||||||.||||||||||||||||||||.||||||||||||
Sbjct 1406  GCAAGTTAAAAGAGAAGTACAGTGAACTGGTGCAGAACCATGCTGACCTGCTGCGGAAGAACGCAGAGGTGACC  1479

Query 1480  AAACAGGTGTCCATGGCCAGACAAGCCCAGGTAGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGGA  1553
            ||||||||||||.|||||.|.|||||||||||.|||||||||.||||||||||||||||.|..|||||.||.|.
Sbjct 1480  AAACAGGTGTCCGTGGCCCGGCAAGCCCAGGTGGATTTGGAAAGAGAGAAAAAAGAGCTAGCAGATTCCTTTGC  1553

Query 1554  GCGCATCAGTGACCAGGGCCAGCGGAAGACTCAAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTTG  1627
            .||                        |||||||||.||.|.|||.||||||||||.|.|||||||.|||||.|
Sbjct 1554  ACG------------------------GACTCAAGAGCAACAGGATGTTCTAGAGAACCTGAAGCATGAACTGG  1603

Query 1628  CCACAAGCCAACGGGAGCTTCAGGTTCTGCAAGGCAGCCTGGAAACTTCTGCCCAGTCAGAAGCAAACTGGGCA  1701
            ||||.|||..||.||||||.|||||.||.||..|||.|||||||||.|||||||||||||||||.||.| |||.
Sbjct 1604  CCACCAGCAGACAGGAGCTGCAGGTCCTCCACAGCAACCTGGAAACCTCTGCCCAGTCAGAAGCGAAAT-GGCT  1676

Query 1702  G-CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATTAT  1774
            | |..||.||||||||.|.||||||||.|..|.||||.|||.||.||..||||||||.||.|||||.||.||||
Sbjct 1677  GACACAGATCGCCGAGTTGGAGAAGGAACAAGGCAGCTTGGCGACTGTTGCAGCTCAGAGAGAGGAAGAGTTAT  1750

Query 1775  CTGCTCTTCGGAAAGAACTGCAGGA---CACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGCTT  1845
            |.||.||.||   |||.|.||.|||   |||.|||.||||.|||||..|..|..|||||||.||||||||||..
Sbjct 1751  CAGCCCTCCG---AGACCAGCTGGAAAGCACCCAGATCAAGCTGGCTGGGGCCCAGGAATCCATGTGCCAGCAG  1821

Query 1846  GCCAAAGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTGAA  1919
            |..||.|||||..|.||||..||..|||..|||..|||||||||||||||||..|.||||||.||.||.||||.
Sbjct 1822  GTGAAGGACCAGAGGAAAACCCTCTTGGCAGGGATCAGGAAGGCTGCGGAGCGTGAGATACAGGAGGCGCTGAG  1895

Query 1920  CCAGCTTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCATTT  1993
            |||||||||.|||||..|.|||||||||||.||.||.||..||||||||||.|||||||..||||..|||.|||
Sbjct 1896  CCAGCTTGAGGAACCCACCCTCATCAGCTGTGCAGGATCCACAGATCACCTTCTCTCCAAAGTCAGCTCCGTTT  1969

Query 1994  CCAGCTGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTCTC  2067
            ||||||||.|||||||||||||.||.|.|.|.||||||||||||||||||||||||||.||.||||..|||||.
Sbjct 1970  CCAGCTGCCTCGAGCAACTGGAAAAGAACGGCAGCCAGTATCTGGCCTGCCCAGAAGATATTAGTGAGCTTCTG  2043

Query 2068  CATTCCATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCAT-------GGTGCCACCACCTGCCTCA  2134
            ||.||.||.||||||||.||||||||||||.|.|||.|.|    ||||       .|||||||||   |||||.
Sbjct 2044  CACTCGATCACCCTGCTTGCCCACTTGACCGGTGACACTA----TCATCCAGGGGAGTGCCACCA---GCCTCC  2110

Query 2135  GAGCCCCACCTGAGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACCTG  2208
            |.||||||||.|||||.||||||||.|||||.||||||||||.||||||||||||.||||||||.|||||.|||
Sbjct 2111  GGGCCCCACCGGAGCCAGCCGACTCGCTGACGGAGGCCTGTAGGCAGTATGGCAGAGAAACCCTGGCCTATCTG  2184

Query 2209  GCCTCCCTGGAGGAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATCAA  2282
            .|||||||||||||||||||||...|.||||||||.|||..|||||||.|.|||||||||||.||||.|.||||
Sbjct 2185  TCCTCCCTGGAGGAAGAGGGAACTATGGAGAATGCTGACGTCACAGCCCTTAGGAACTGCCTCAGCAGGGTCAA  2258

Query 2283  GGCCATCGGCGAGGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAAGG  2356
            |.||.|.|||||||||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||||||
Sbjct 2259  GACCCTTGGCGAGGAGCTGCTGCCCAGGGGCCTGGACATCAAGCAGGAAGAGCTGGGTGACCTGGTGGACAAGG  2332

Query 2357  AGATGGCGGCCACTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGAGGAGATGCTCAGCAAATCCCGAGCA  2430
            |||||||.||||||||||||||.||||||.|||||||..||.|.||||||||.||.|||||.||.|||||||||
Sbjct 2333  AGATGGCAGCCACTTCAGCTGCCATTGAAGCTGCCACCACCCGGATAGAGGAAATTCTCAGTAAGTCCCGAGCA  2406

Query 2431  GGAGACACAGGAGTCAAATTGGAGGTGAATGAAAGGATCCTTGGTTGCTGTACCAGCCTCATGCAGGCTATTCA  2504
            ||||||||.||||||||..|||||||||||||.||||||||.||||.||||||||||||.||||||||.||..|
Sbjct 2407  GGAGACACGGGAGTCAAGCTGGAGGTGAATGAGAGGATCCTGGGTTCCTGTACCAGCCTGATGCAGGCCATCAA  2480

Query 2505  GGTGCTCATCGTGGCCTCTAAGGACCTCCAGAGAGAGATTGTGGAGAGCGGCAGGGGTACAGCATCCCCTAAAG  2578
            |||||||.|.||||||||.|||||||||||||..|||||.||||||||.|||||||||||.|||||||||||||
Sbjct 2481  GGTGCTCGTTGTGGCCTCCAAGGACCTCCAGAAGGAGATAGTGGAGAGTGGCAGGGGTACTGCATCCCCTAAAG  2554

Query 2579  AGTTTTATGCCAAGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCACT  2652
            |.|||||.||||||||||||||.|||||.|||||.||.||.||.||||||||.|||||.||.||||||||.||.
Sbjct 2555  AATTTTACGCCAAGAACTCTCGGTGGACGGAAGGGCTGATATCCGCCTCCAAAGCTGTTGGTTGGGGAGCTACC  2628

Query 2653  GTCATGGTGGATGCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCATGA  2726
            .|||||||||||||.||||||||.|||||.|||||||.||||||.||.||||||||.|||||||||||.|..||
Sbjct 2629  ATCATGGTGGATGCTGCTGATCTTGTGGTCCAAGGCAAAGGGAAGTTCGAGGAGCTGATGGTGTGTTCACGCGA  2702

Query 2727  AATTGCTGCTAGCACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCTAACCTAGCCC  2800
            .||||||||.||.||.||||||||.|||||||||||||||||||||||..|.||||.|||||..||.||..|||
Sbjct 2703  GATTGCTGCCAGTACTGCCCAGCTCGTGGCTGCATCCAAGGTGAAAGCGAACAAGGGCAGCCTCAATCTGACCC  2776

Query 2801  AGCTGCAGCAGGCCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAATCA  2874
            |||||||||||||||||||.|||||||||||||||||.||||..||.|||||||||||||||||.||||||||.
Sbjct 2777  AGCTGCAGCAGGCCTCTCGAGGAGTGAACCAGGCCACAGCCGCTGTGGTGGCCTCAACCATTTCTGGCAAATCT  2850

Query 2875  CAGATCGAAGAGACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGATTC  2948
            |||||.||.||.|||||||..||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||
Sbjct 2851  CAGATTGAGGAAACAGACAGTATGGACTTCTCAAGCATGACACTGACCCAGATCAAGCGCCAGGAGATGGATTC  2924

Query 2949  TCAGGTTAGGGTGCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAAGC  3022
            .||||||||||||||.|||||.||||||||..||||||||||||||||.|||||.||||||||.|||||.||.|
Sbjct 2925  CCAGGTTAGGGTGCTGGAGCTGGAAAATGACCTGCAGAAGGAGCGTCAGAAACTAGGAGAGCTACGGAAGAAAC  2998

Query 3023  ACTACGAGCTTGCTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAGTG  3096
            ||||||||||.||.||.||.||||||||||||||.|||||.|||||.|||||.||..||||..|.|||||||..
Sbjct 2999  ACTACGAGCTGGCGGGCGTGGCTGAGGGCTGGGAGGAAGGGACAGAAGCATCACCGTCTACTGTCCAAGAAGCA  3072

Query 3097  GTAACCGAAAAAGAA  3111
            .||.|.||.|||||.
Sbjct 3073  ATACCGGACAAAGAG  3087

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