Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06366
Subject:
XM_011240879.2
Aligned Length:
3124
Identities:
2560
Gaps:
125

Alignment

Query    1  ATGGATCGGA-TGGCCAGCTCCATGAAGCAGGTGCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCG  73
            |||||    | ||..|||.|  || ||| |.|||  ||.|.|||                              
Sbjct    1  ATGGA----ATTGTACAGTT--AT-AAG-ATGTG--CATCACAC------------------------------  34

Query   74  GCGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAAT  147
                    |||||                   ||         |.|.||.||||||.|||||||||||||||||
Sbjct   35  --------CTGGA-------------------TT---------TTATACGGTCAGCGTCAATAAGGCCATTAAT  72

Query  148  ACGCAGGAAGTGGCTGTAAAGGAAAAACACGCCAGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACA  221
            ||||||||||||||.||.||.||.|||||.|||||.|||||.||.|||||||||||||||||||||||.||.||
Sbjct   73  ACGCAGGAAGTGGCCGTGAAAGAGAAACATGCCAGGACGTGTATTCTGGGCACCCACCATGAGAAAGGAGCGCA  146

Query  222  GACCTTCTGGTCTGTTGTCAACCGCCTGCCTCTGTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGT  295
            ||||||.||||||||.||||||||.||||||||.||.||||||||..||||.|||||||||||.||.||.||||
Sbjct  147  GACCTTTTGGTCTGTGGTCAACCGACTGCCTCTCTCCAGCAACGCCATGCTGTGCTGGAAGTTTTGTCACGTGT  220

Query  296  TCCACAAACTCCTCCGAGATGGACACCCGAACGTCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGAC  369
            ||||||||||.||.|||||||||||.||||||||.|||||.||||||||||||||||.||||||.||.||.|||
Sbjct  221  TCCACAAACTTCTTCGAGATGGACATCCGAACGTGCTGAAAGACTCTCTGAGATACAAAAATGAGTTAAGCGAC  294

Query  370  ATGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAAC  443
            ||||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||
Sbjct  295  ATGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGACAGCTTTGCAGCATCTACCTCAAACTGCTGAGAAC  368

Query  444  CAAGATGGAGTACCACACCAAAAATCCCAGGTTCCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGG  517
            .|.|||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||.||||
Sbjct  369  AAGGATGGAGTACCACACCAAAAATCCCAGGTTCCCGGGCAACCTCCAGATGAGTGACCGACAGCTGGATGAGG  442

Query  518  CTGGAGAAAGTGACGTGAACAACTTTTTCCAGTTAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAAC  591
            |.||||||||||||||.|||||||||||.|||.|.|||||||||||||||||.|||||||||||||||||.|||
Sbjct  443  CCGGAGAAAGTGACGTTAACAACTTTTTTCAGCTCACAGTGGAGATGTTTGATTACCTGGAGTGTGAACTGAAC  516

Query  592  CTCTTCCAAACAGTATTCAACTCCCTGGACATGTCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCT  665
            ||||||||.||.||.|||||||||.|||||||||||||.||.|||||||||||..|.||.||.|||||||||||
Sbjct  517  CTCTTCCAGACTGTGTTCAACTCCTTGGACATGTCCCGTTCGGTGTCCGTGACCACGGCTGGCCAGTGCCGCCT  590

Query  666  CGCCCCGCTGATCCAGGTCATCTTGGACTGCAGCCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCC  739
            |||.|||||.||||||||||||.||||||||||.|||||.||||||||||||||||||||.||||||||.||||
Sbjct  591  CGCACCGCTCATCCAGGTCATCCTGGACTGCAGTCACCTCTATGACTACACTGTCAAGCTGCTCTTCAAGCTCC  664

Query  740  ACTCCTGCCTCCCAGCTGACACCCTGCAAGGCCACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGAT  813
            |||||||.||.|||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||
Sbjct  665  ACTCCTGTCTTCCAGCTGACACCCTGCAGGGCCACCGAGACCGCTTCATGGAGCAGTTCACAAAGTTGAAAGAT  738

Query  814  CTGTTCTACCGCTCCAGCAACCTGCAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACC  887
            |||||..|.||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||.|||||
Sbjct  739  CTGTTTCAGCGCTCCAGCAACCTACAGTACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCCGAGAATCCACC  812

Query  888  CAACTTCCTGCGAGCCTCAGCCCTGTCAGAACATATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCC  961
            |||||||||.||||||||.|||||||||||.||.|||||.|||||||||||||||||.|||||||..|||||||
Sbjct  813  CAACTTCCTACGAGCCTCGGCCCTGTCAGAGCACATCAGTCCTGTGGTGGTGATCCCGGCAGAGGTGTCATCCC  886

Query  962  CCGACAGCGAGCCAGTCCTAGAGAAGGATGACCTCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAAC  1035
            |.|||||.|||||.|||||.||||||||||||||||||||||||||.|||||.|||||||.|||.|||||||||
Sbjct  887  CAGACAGTGAGCCTGTCCTGGAGAAGGATGACCTCATGGACATGGACGCCTCCCAGCAGACTTTGTTTGACAAC  960

Query 1036  AAGTTTGATGACATCTTTGGCAGTTCATTCAGCAGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAA  1109
            ||||||||||||.||||||||||.|||||.|||||.||.||.|||||||||||||.|||||||||.||||||||
Sbjct  961  AAGTTTGATGACGTCTTTGGCAGCTCATTGAGCAGCGACCCTTTCAATTTCAACAATCAAAATGGCGTGAACAA  1034

Query 1110  GGATGAGAAGGACCACTTAATTGAGCGACTATACAGAGAGATCAGTGGATTGA-AGGCACAGCTAGAAAACATG  1182
            |||.||||||||||||||.|||||.||.||.||||||||||||||||||.||| ||| .|||||.||.||||||
Sbjct 1035  GGACGAGAAGGACCACTTGATTGAACGCCTGTACAGAGAGATCAGTGGACTGACAGG-GCAGCTGGACAACATG  1107

Query 1183  AAGACTGAGAGCCAGCGGGTTGTGCTGCAGCTGAAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCA  1256
            ||||.||||||||||||||...||||||||||||||||.|..||.||.||||||||.|||||.||.||.|||||
Sbjct 1108  AAGATTGAGAGCCAGCGGGCCATGCTGCAGCTGAAGGGTCGAGTGAGTGAGCTGGAGGCAGAGCTAGCAGAGCA  1181

Query 1257  GCAGCACCTGCGGCAGCAGGCGGCCGACGACTGTGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGC  1330
            |||||||.||.|.|.||||||....||.|||||.||.||||||||..|.||.|||||.||.||.|.||||||||
Sbjct 1182  GCAGCACTTGGGCCGGCAGGCTATGGATGACTGCGAGTTCCTGCGCACTGAGCTGGATGAACTGAAGAGGCAGC  1255

Query 1331  GGGAGGACACCGAGAAGGCTCAGCGGAGCCTGTCTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATAT  1404
            |.||||||||.||||||||.|||||.||||||.|||||||||||||.||.||.||.||.|||||||||.|.|||
Sbjct 1256  GAGAGGACACGGAGAAGGCACAGCGCAGCCTGACTGAGATAGAAAGAAAGGCCCAGGCTAATGAACAGAGGTAT  1329

Query 1405  AGCAAGCTAAAGGAGAAGTACAGCGAGCTGGTTCAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGAC  1478
            ||||||.||||.|||||||||||.||.|||||.||||||||.||||||||||||||||||||.|||||||||||
Sbjct 1330  AGCAAGTTAAAAGAGAAGTACAGTGAACTGGTGCAGAACCATGCTGACCTGCTGCGGAAGAACGCAGAGGTGAC  1403

Query 1479  CAAACAGGTGTCCATGGCCAGACAAGCCCAGGTAGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGG  1552
            |||||||||||||.|||||.|.|||||||||||.|||||||||.||||||||||||||||.|..|||||.||.|
Sbjct 1404  CAAACAGGTGTCCGTGGCCCGGCAAGCCCAGGTGGATTTGGAAAGAGAGAAAAAAGAGCTAGCAGATTCCTTTG  1477

Query 1553  AGCGCATCAGTGACCAGGGCCAGCGGAAGACTCAAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTT  1626
            ..||                        |||||||||.||.|.|||.||||||||||.|.|||||||.|||||.
Sbjct 1478  CACG------------------------GACTCAAGAGCAACAGGATGTTCTAGAGAACCTGAAGCATGAACTG  1527

Query 1627  GCCACAAGCCAACGGGAGCTTCAGGTTCTGCAAGGCAGCCTGGAAACTTCTGCCCAGTCAGAAGCAAACTGGGC  1700
            |||||.|||..||.||||||.|||||.||.||..|||.|||||||||.|||||||||||||||||.||.| |||
Sbjct 1528  GCCACCAGCAGACAGGAGCTGCAGGTCCTCCACAGCAACCTGGAAACCTCTGCCCAGTCAGAAGCGAAAT-GGC  1600

Query 1701  AG-CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATTA  1773
            .| |..||.||||||||.|.||||||||.|..|.||||.|||.||.||..||||||||.||.|||||.||.|||
Sbjct 1601  TGACACAGATCGCCGAGTTGGAGAAGGAACAAGGCAGCTTGGCGACTGTTGCAGCTCAGAGAGAGGAAGAGTTA  1674

Query 1774  TCTGCTCTTCGGAAAGAACTGCAGGA---CACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGCT  1844
            ||.||.||.||   |||.|.||.|||   |||.|||.||||.|||||..|..|..|||||||.||||||||||.
Sbjct 1675  TCAGCCCTCCG---AGACCAGCTGGAAAGCACCCAGATCAAGCTGGCTGGGGCCCAGGAATCCATGTGCCAGCA  1745

Query 1845  TGCCAAAGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTGA  1918
            .|..||.|||||..|.||||..||..|||..|||..|||||||||||||||||..|.||||||.||.||.||||
Sbjct 1746  GGTGAAGGACCAGAGGAAAACCCTCTTGGCAGGGATCAGGAAGGCTGCGGAGCGTGAGATACAGGAGGCGCTGA  1819

Query 1919  ACCAGCTTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCATT  1992
            .|||||||||.|||||..|.|||||||||||.||.||.||..||||||||||.|||||||..||||..|||.||
Sbjct 1820  GCCAGCTTGAGGAACCCACCCTCATCAGCTGTGCAGGATCCACAGATCACCTTCTCTCCAAAGTCAGCTCCGTT  1893

Query 1993  TCCAGCTGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTCT  2066
            |||||||||.|||||||||||||.||.|.|.|.||||||||||||||||||||||||||.||.||||..|||||
Sbjct 1894  TCCAGCTGCCTCGAGCAACTGGAAAAGAACGGCAGCCAGTATCTGGCCTGCCCAGAAGATATTAGTGAGCTTCT  1967

Query 2067  CCATTCCATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCAT-------GGTGCCACCACCTGCCTC  2133
            .||.||.||.||||||||.||||||||||||.|.|||.|.|    ||||       .|||||||||   |||||
Sbjct 1968  GCACTCGATCACCCTGCTTGCCCACTTGACCGGTGACACTA----TCATCCAGGGGAGTGCCACCA---GCCTC  2034

Query 2134  AGAGCCCCACCTGAGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACCT  2207
            .|.||||||||.|||||.||||||||.|||||.||||||||||.||||||||||||.||||||||.|||||.||
Sbjct 2035  CGGGCCCCACCGGAGCCAGCCGACTCGCTGACGGAGGCCTGTAGGCAGTATGGCAGAGAAACCCTGGCCTATCT  2108

Query 2208  GGCCTCCCTGGAGGAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATCA  2281
            |.|||||||||||||||||||||...|.||||||||.|||..|||||||.|.|||||||||||.||||.|.|||
Sbjct 2109  GTCCTCCCTGGAGGAAGAGGGAACTATGGAGAATGCTGACGTCACAGCCCTTAGGAACTGCCTCAGCAGGGTCA  2182

Query 2282  AGGCCATCGGCGAGGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAAG  2355
            ||.||.|.|||||||||||.|||||||||||.|||||||||||||||||.||||||||.|||||||||||||||
Sbjct 2183  AGACCCTTGGCGAGGAGCTGCTGCCCAGGGGCCTGGACATCAAGCAGGAAGAGCTGGGTGACCTGGTGGACAAG  2256

Query 2356  GAGATGGCGGCCACTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGAGGAGATGCTCAGCAAATCCCGAGC  2429
            ||||||||.||||||||||||||.||||||.|||||||..||.|.||||||||.||.|||||.||.||||||||
Sbjct 2257  GAGATGGCAGCCACTTCAGCTGCCATTGAAGCTGCCACCACCCGGATAGAGGAAATTCTCAGTAAGTCCCGAGC  2330

Query 2430  AGGAGACACAGGAGTCAAATTGGAGGTGAATGAAAGGATCCTTGGTTGCTGTACCAGCCTCATGCAGGCTATTC  2503
            |||||||||.||||||||..|||||||||||||.||||||||.||||.||||||||||||.||||||||.||..
Sbjct 2331  AGGAGACACGGGAGTCAAGCTGGAGGTGAATGAGAGGATCCTGGGTTCCTGTACCAGCCTGATGCAGGCCATCA  2404

Query 2504  AGGTGCTCATCGTGGCCTCTAAGGACCTCCAGAGAGAGATTGTGGAGAGCGGCAGGGGTACAGCATCCCCTAAA  2577
            ||||||||.|.||||||||.|||||||||||||..|||||.||||||||.|||||||||||.||||||||||||
Sbjct 2405  AGGTGCTCGTTGTGGCCTCCAAGGACCTCCAGAAGGAGATAGTGGAGAGTGGCAGGGGTACTGCATCCCCTAAA  2478

Query 2578  GAGTTTTATGCCAAGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCAC  2651
            ||.|||||.||||||||||||||.|||||.|||||.||.||.||.||||||||.|||||.||.||||||||.||
Sbjct 2479  GAATTTTACGCCAAGAACTCTCGGTGGACGGAAGGGCTGATATCCGCCTCCAAAGCTGTTGGTTGGGGAGCTAC  2552

Query 2652  TGTCATGGTGGATGCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCATG  2725
            ..|||||||||||||.||||||||.|||||.|||||||.||||||.||.||||||||.|||||||||||.|..|
Sbjct 2553  CATCATGGTGGATGCTGCTGATCTTGTGGTCCAAGGCAAAGGGAAGTTCGAGGAGCTGATGGTGTGTTCACGCG  2626

Query 2726  AAATTGCTGCTAGCACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCTAACCTAGCC  2799
            |.||||||||.||.||.||||||||.|||||||||||||||||||||||..|.||||.|||||..||.||..||
Sbjct 2627  AGATTGCTGCCAGTACTGCCCAGCTCGTGGCTGCATCCAAGGTGAAAGCGAACAAGGGCAGCCTCAATCTGACC  2700

Query 2800  CAGCTGCAGCAGGCCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAATC  2873
            ||||||||||||||||||||.|||||||||||||||||.||||..||.|||||||||||||||||.||||||||
Sbjct 2701  CAGCTGCAGCAGGCCTCTCGAGGAGTGAACCAGGCCACAGCCGCTGTGGTGGCCTCAACCATTTCTGGCAAATC  2774

Query 2874  ACAGATCGAAGAGACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGATT  2947
            .|||||.||.||.|||||||..||||||||||||||||||||.|||||.||||||||.|||||.||||||||||
Sbjct 2775  TCAGATTGAGGAAACAGACAGTATGGACTTCTCAAGCATGACACTGACCCAGATCAAGCGCCAGGAGATGGATT  2848

Query 2948  CTCAGGTTAGGGTGCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAAG  3021
            |.||||||||||||||.|||||.||||||||..||||||||||||||||.|||||.||||||||.|||||.||.
Sbjct 2849  CCCAGGTTAGGGTGCTGGAGCTGGAAAATGACCTGCAGAAGGAGCGTCAGAAACTAGGAGAGCTACGGAAGAAA  2922

Query 3022  CACTACGAGCTTGCTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAGT  3095
            |||||||||||.||.||.||.||||||||||||||.|||||.|||||.|||||.||..||||..|.|||||||.
Sbjct 2923  CACTACGAGCTGGCGGGCGTGGCTGAGGGCTGGGAGGAAGGGACAGAAGCATCACCGTCTACTGTCCAAGAAGC  2996

Query 3096  GGTAACCGAAAAAGAA  3111
            ..||.|.||.|||||.
Sbjct 2997  AATACCGGACAAAGAG  3012

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