Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06366
Subject:
XR_868560.2
Aligned Length:
3421
Identities:
2191
Gaps:
868

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCAGACCAGTCATAGTATGCGGACCGCCCTGAGGCGGGCAGCGGGTGAAGTGAGCGGAGCGCCTCCGAAGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAAGAGGGGTGTGGGGAAAAGCCTCTTGGAAACATGGGGTGGGTTCTGAGGGAGATGGACAGCGCTGTCAACCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATGGAAGACGGAATCTGTCCCCGTTAGCGCCGGATCCCCGCGGGTAGGGAGGGGCGGGAGGCTCCGCGGGGATC  222

Query    1  ------------------------------------------ATGGATCGGATGGCCAGCTCCATGAAGCAGGT  32
                                                      |||||.||.|||||||||||||||||||||||
Sbjct  223  CCGGGGCGGCCGAGGGCCCCTGACTCTGTTCACCCAGACAACATGGACCGAATGGCCAGCTCCATGAAGCAGGT  296

Query   33  GCCCAACCCACTGCCCAAGGTGCTGAGCCGGCGCGGGGTCGGCGCTGGGCTGGAGGCGGCGGAGCGCGAGAGCT  106
            ..|||||||.||||||||.|||.|||||||.|||||.||.||.||||||.|||||||.||||||||||||||||
Sbjct  297  ATCCAACCCGCTGCCCAAAGTGTTGAGCCGCCGCGGAGTTGGTGCTGGGATGGAGGCTGCGGAGCGCGAGAGCT  370

Query  107  TCGAGCGGACTCAGACTGTCAGCATCAATAAGGCCATTAATACGCAGGAAGTGGCTGTAAAGGAAAAACACGCC  180
            ||||||||||||||||.||||||.|||||||||||||||||||||||||||||||.||.||.||.|||||.|||
Sbjct  371  TCGAGCGGACTCAGACGGTCAGCGTCAATAAGGCCATTAATACGCAGGAAGTGGCCGTGAAAGAGAAACATGCC  444

Query  181  AGAACGTGCATACTGGGCACCCACCATGAGAAAGGGGCACAGACCTTCTGGTCTGTTGTCAACCGCCTGCCTCT  254
            ||.|||||.||.|||||||||||||||||||||||.||.||||||||.||||||||.||||||||.||||||||
Sbjct  445  AGGACGTGTATTCTGGGCACCCACCATGAGAAAGGAGCGCAGACCTTTTGGTCTGTGGTCAACCGACTGCCTCT  518

Query  255  GTCTAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTGTTCCACAAACTCCTCCGAGATGGACACCCGAACG  328
            .||.||||||||..||||.|||||||||||.||.||.||||||||||||||.||.|||||||||||.|||||||
Sbjct  519  CTCCAGCAACGCCATGCTGTGCTGGAAGTTTTGTCACGTGTTCCACAAACTTCTTCGAGATGGACATCCGAACG  592

Query  329  TCCTGAAGGACTCTCTGAGATACAGAAATGAATTGAGTGACATGAGCAGGATGTGGGGCCACCTGAGCGAGGGG  402
            |.|||||.||||||||||||||||.||||||.||.||.||||||||||||||||||||||||||||||||||||
Sbjct  593  TGCTGAAAGACTCTCTGAGATACAAAAATGAGTTAAGCGACATGAGCAGGATGTGGGGCCACCTGAGCGAGGGG  666

Query  403  TATGGCCAGCTGTGCAGCATCTACCTGAAACTGCTAAGAACCAAGATGGAGTACCACACCAAAAATCCCAGGTT  476
            |||||.|||||.||||||||||||||.||||||||.|||||.|.||||||||||||||||||||||||||||||
Sbjct  667  TATGGACAGCTTTGCAGCATCTACCTCAAACTGCTGAGAACAAGGATGGAGTACCACACCAAAAATCCCAGGTT  740

Query  477  CCCAGGCAACCTGCAGATGAGTGACCGCCAGCTGGACGAGGCTGGAGAAAGTGACGTGAACAACTTTTTCCAGT  550
            |||.||||||||.||||||||||||||.||||||||.|||||.||||||||||||||.|||||||||||.|||.
Sbjct  741  CCCGGGCAACCTCCAGATGAGTGACCGACAGCTGGATGAGGCCGGAGAAAGTGACGTTAACAACTTTTTTCAGC  814

Query  551  TAACAGTGGAGATGTTTGACTACCTGGAGTGTGAACTCAACCTCTTCCAAACAGTATTCAACTCCCTGGACATG  624
            |.|||||||||||||||||.|||||||||||||||||.|||||||||||.||.||.|||||||||.||||||||
Sbjct  815  TCACAGTGGAGATGTTTGATTACCTGGAGTGTGAACTGAACCTCTTCCAGACTGTGTTCAACTCCTTGGACATG  888

Query  625  TCCCGCTCTGTGTCCGTGACGGCAGCAGGGCAGTGCCGCCTCGCCCCGCTGATCCAGGTCATCTTGGACTGCAG  698
            |||||.||.|||||||||||..|.||.||.||||||||||||||.|||||.||||||||||||.||||||||||
Sbjct  889  TCCCGTTCGGTGTCCGTGACCACGGCTGGCCAGTGCCGCCTCGCACCGCTCATCCAGGTCATCCTGGACTGCAG  962

Query  699  CCACCTTTATGACTACACTGTCAAGCTTCTCTTCAAACTCCACTCCTGCCTCCCAGCTGACACCCTGCAAGGCC  772
            .|||||.||||||||||||||||||||.||||||||.|||||||||||.||.|||||||||||||||||.||||
Sbjct  963  TCACCTCTATGACTACACTGTCAAGCTGCTCTTCAAGCTCCACTCCTGTCTTCCAGCTGACACCCTGCAGGGCC  1036

Query  773  ACCGGGACCGCTTCATGGAGCAGTTTACAAAGTTGAAAGATCTGTTCTACCGCTCCAGCAACCTGCAGTACTTC  846
            ||||.||||||||||||||||||||.||||||||||||||||||||..|.||||||||||||||.|||||||||
Sbjct 1037  ACCGAGACCGCTTCATGGAGCAGTTCACAAAGTTGAAAGATCTGTTTCAGCGCTCCAGCAACCTACAGTACTTC  1110

Query  847  AAGCGGCTCATTCAGATCCCCCAGCTGCCTGAGAACCCACCCAACTTCCTGCGAGCCTCAGCCCTGTCAGAACA  920
            |||||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||||||||.||
Sbjct 1111  AAGCGGCTCATTCAGATCCCCCAGCTGCCCGAGAATCCACCCAACTTCCTACGAGCCTCGGCCCTGTCAGAGCA  1184

Query  921  TATCAGCCCTGTGGTGGTGATCCCTGCAGAGGCCTCATCCCCCGACAGCGAGCCAGTCCTAGAGAAGGATGACC  994
            .|||||.|||||||||||||||||.|||||||..||||||||.|||||.|||||.|||||.|||||||||||||
Sbjct 1185  CATCAGTCCTGTGGTGGTGATCCCGGCAGAGGTGTCATCCCCAGACAGTGAGCCTGTCCTGGAGAAGGATGACC  1258

Query  995  TCATGGACATGGATGCCTCTCAGCAGAATTTATTTGACAACAAGTTTGATGACATCTTTGGCAGTTCATTCAGC  1068
            |||||||||||||.|||||.|||||||.|||.|||||||||||||||||||||.||||||||||.|||||.|||
Sbjct 1259  TCATGGACATGGACGCCTCCCAGCAGACTTTGTTTGACAACAAGTTTGATGACGTCTTTGGCAGCTCATTGAGC  1332

Query 1069  AGTGATCCCTTCAATTTCAACAGTCAAAATGGTGTGAACAAGGATGAGAAGGACCACTTAATTGAGCGACTATA  1142
            ||.||.||.|||||||||||||.|||||||||.|||||||||||.||||||||||||||.|||||.||.||.||
Sbjct 1333  AGCGACCCTTTCAATTTCAACAATCAAAATGGCGTGAACAAGGACGAGAAGGACCACTTGATTGAACGCCTGTA  1406

Query 1143  CAGAGAGATCAGTGGATTGA-AGGCACAGCTAGAAAACATGAAGACTGAGAGCCAGCGGGTTGTGCTGCAGCTG  1215
            ||||||||||||||||.||| ||| .|||||.||.||||||||||.||||||||||||||...|||||||||||
Sbjct 1407  CAGAGAGATCAGTGGACTGACAGG-GCAGCTGGACAACATGAAGATTGAGAGCCAGCGGGCCATGCTGCAGCTG  1479

Query 1216  AAGGGCCACGTCAGCGAGCTGGAAGCAGATCTGGCCGAGCAGCAGCACCTGCGGCAGCAGGCGGCCGACGACTG  1289
            |||||.|..||.||.||||||||.|||||.||.||.||||||||||||.||.|.|.||||||....||.|||||
Sbjct 1480  AAGGGTCGAGTGAGTGAGCTGGAGGCAGAGCTAGCAGAGCAGCAGCACTTGGGCCGGCAGGCTATGGATGACTG  1553

Query 1290  TGAATTCCTGCGGGCAGAACTGGACGAGCTCAGGAGGCAGCGGGAGGACACCGAGAAGGCTCAGCGGAGCCTGT  1363
            .||.||||||||..|.||.|||||.||.||.|.|||||||||.||||||||.||||||||.|||||.||||||.
Sbjct 1554  CGAGTTCCTGCGCACTGAGCTGGATGAACTGAAGAGGCAGCGAGAGGACACGGAGAAGGCACAGCGCAGCCTGA  1627

Query 1364  CTGAGATAGAAAGGAAAGCTCAAGCCAATGAACAGCGATATAGCAAGCTAAAGGAGAAGTACAGCGAGCTGGTT  1437
            |||||||||||||.||.||.||.||.|||||||||.|.|||||||||.||||.|||||||||||.||.|||||.
Sbjct 1628  CTGAGATAGAAAGAAAGGCCCAGGCTAATGAACAGAGGTATAGCAAGTTAAAAGAGAAGTACAGTGAACTGGTG  1701

Query 1438  CAGAACCACGCTGACCTGCTGCGGAAGAATGCAGAGGTGACCAAACAGGTGTCCATGGCCAGACAAGCCCAGGT  1511
            ||||||||.||||||||||||||||||||.||||||||||||||||||||||||.|||||.|.|||||||||||
Sbjct 1702  CAGAACCATGCTGACCTGCTGCGGAAGAACGCAGAGGTGACCAAACAGGTGTCCGTGGCCCGGCAAGCCCAGGT  1775

Query 1512  AGATTTGGAACGAGAGAAAAAAGAGCTGGAGGATTCGTTGGAGCGCATCAGTGACCAGGGCCAGCGGAAGACTC  1585
            .|||||||||.||||||||||||||||.|..|||||.||.|..||                        |||||
Sbjct 1776  GGATTTGGAAAGAGAGAAAAAAGAGCTAGCAGATTCCTTTGCACG------------------------GACTC  1825

Query 1586  AAGAACAGCTGGAAGTTCTAGAGAGCTTGAAGCAGGAACTTGCCACAAGCCAACGGGAGCTTCAGGTTCTGCAA  1659
            ||||.||.|.|||.||||||||||.|.|||||||.|||||.|||||.|||..||.||||||.|||||.||.||.
Sbjct 1826  AAGAGCAACAGGATGTTCTAGAGAACCTGAAGCATGAACTGGCCACCAGCAGACAGGAGCTGCAGGTCCTCCAC  1899

Query 1660  GGCAGCCTGGAAACTTCTGCC----------------------------------CAGTCAGAAGCAAACTGGG  1699
            .|||.|||||||||.||||||                                  |||||||||||.||.| ||
Sbjct 1900  AGCAACCTGGAAACCTCTGCCCAGTTTCTCCCTATTCCCACATGGGTGACCTCTGCAGTCAGAAGCGAAAT-GG  1972

Query 1700  CAG-CCGAGTTCGCCGAGCTAGAGAAGGAGCGGGACAGCCTGGTGAGTGGCGCAGCTCATAGGGAGGAGGAATT  1772
            |.| |..||.||||||||.|.||||||||.|..|.||||.|||.||.||..||||||||.||.|||||.||.||
Sbjct 1973  CTGACACAGATCGCCGAGTTGGAGAAGGAACAAGGCAGCTTGGCGACTGTTGCAGCTCAGAGAGAGGAAGAGTT  2046

Query 1773  ATCTGCTCTTCGGAAAGAACTGCAGGA---CACTCAGCTCAAACTGGCCAGCACAGAGGAATCTATGTGCCAGC  1843
            |||.||.||.||   |||.|.||.|||   |||.|||.||||.|||||..|..|..|||||||.||||||||||
Sbjct 2047  ATCAGCCCTCCG---AGACCAGCTGGAAAGCACCCAGATCAAGCTGGCTGGGGCCCAGGAATCCATGTGCCAGC  2117

Query 1844  TTGCCAAAGACCAACGAAAAATGCTTCTGGTGGGGTCCAGGAAGGCTGCGGAGCAGGTGATACAAGACGCCCTG  1917
            ..|..||.|||||..|.||||..||..|||..|||..|||||||||||||||||..|.||||||.||.||.|||
Sbjct 2118  AGGTGAAGGACCAGAGGAAAACCCTCTTGGCAGGGATCAGGAAGGCTGCGGAGCGTGAGATACAGGAGGCGCTG  2191

Query 1918  AACCAGCTTGAAGAACCTCCTCTCATCAGCTGCGCTGGGTCTGCAGATCACCTCCTCTCCACGGTCACATCCAT  1991
            |.|||||||||.|||||..|.|||||||||||.||.||.||..||||||||||.|||||||..||||..|||.|
Sbjct 2192  AGCCAGCTTGAGGAACCCACCCTCATCAGCTGTGCAGGATCCACAGATCACCTTCTCTCCAAAGTCAGCTCCGT  2265

Query 1992  TTCCAGCTGCATCGAGCAACTGGAGAAAAGCTGGAGCCAGTATCTGGCCTGCCCAGAAGACATCAGTGGACTTC  2065
            ||||||||||.|||||||||||||.||.|.|.|.||||||||||||||||||||||||||.||.||||..||||
Sbjct 2266  TTCCAGCTGCCTCGAGCAACTGGAAAAGAACGGCAGCCAGTATCTGGCCTGCCCAGAAGATATTAGTGAGCTTC  2339

Query 2066  TCCATTCCATAACCCTGCTGGCCCACTTGACCAGCGACGCCATTGCTCAT-------GGTGCCACCACCTGCCT  2132
            |.||.||.||.||||||||.||||||||||||.|.|||.|.|    ||||       .|||||||||   ||||
Sbjct 2340  TGCACTCGATCACCCTGCTTGCCCACTTGACCGGTGACACTA----TCATCCAGGGGAGTGCCACCA---GCCT  2406

Query 2133  CAGAGCCCCACCTGAGCCTGCCGACTCACTGACCGAGGCCTGTAAGCAGTATGGCAGGGAAACCCTCGCCTACC  2206
            |.|.||||||||.|||||.||||||||.|||||.||||||||||.||||||||||||.||||||||.|||||.|
Sbjct 2407  CCGGGCCCCACCGGAGCCAGCCGACTCGCTGACGGAGGCCTGTAGGCAGTATGGCAGAGAAACCCTGGCCTATC  2480

Query 2207  TGGCCTCCCTGGAGGAAGAGGGAAGCCTTGAGAATGCCGACAGCACAGCCATGAGGAACTGCCTGAGCAAGATC  2280
            ||.|||||||||||||||||||||...|.||||||||.|||..|||||||.|.|||||||||||.||||.|.||
Sbjct 2481  TGTCCTCCCTGGAGGAAGAGGGAACTATGGAGAATGCTGACGTCACAGCCCTTAGGAACTGCCTCAGCAGGGTC  2554

Query 2281  AAGGCCATCGGCGAGGAGCTCCTGCCCAGGGGACTGGACATCAAGCAGGAGGAGCTGGGGGACCTGGTGGACAA  2354
            |||.||.|.|||||||||||.|||||||||||.|||||||||||||||||.||||||||.||||||||||||||
Sbjct 2555  AAGACCCTTGGCGAGGAGCTGCTGCCCAGGGGCCTGGACATCAAGCAGGAAGAGCTGGGTGACCTGGTGGACAA  2628

Query 2355  GGAGATGGCGGCCACTTCAGCTGCTATTGAAACTGCCACGGCCAGAATAGAGGAGATGCTCAGCAAATCCCGAG  2428
            |||||||||.||||||||||||||.||||||.|||||||..||.|.||||||||.||.|||||.||.|||||||
Sbjct 2629  GGAGATGGCAGCCACTTCAGCTGCCATTGAAGCTGCCACCACCCGGATAGAGGAAATTCTCAGTAAGTCCCGAG  2702

Query 2429  CAGGAGACACAGGAGTCAAATTGGAGGTGAATGAAAGGATCCTTGGTTGCTGTACCAGCCTCATGCAGGCTATT  2502
            ||||||||||.||||||||..|||||||||||||.||||||||.||||.||||||||||||.||||||||.||.
Sbjct 2703  CAGGAGACACGGGAGTCAAGCTGGAGGTGAATGAGAGGATCCTGGGTTCCTGTACCAGCCTGATGCAGGCCATC  2776

Query 2503  CAGGTGCTCATCGTGGCCTCTAAGGACCTCCAGAGAGAGATTGTGGAGAGCGGCAGGGGTACAGCATCCCCTAA  2576
            .||||||||.|.||||||||.|||||||||||||..|||||.||||||||.|||||||||||.|||||||||||
Sbjct 2777  AAGGTGCTCGTTGTGGCCTCCAAGGACCTCCAGAAGGAGATAGTGGAGAGTGGCAGGGGTACTGCATCCCCTAA  2850

Query 2577  AGAGTTTTATGCCAAGAACTCTCGATGGACAGAAGGACTTATCTCAGCCTCCAAGGCTGTGGGCTGGGGAGCCA  2650
            |||.|||||.|||                                                             
Sbjct 2851  AGAATTTTACGCC-------------------------------------------------------------  2863

Query 2651  CTGTCATGGTGGATGCAGCTGATCTGGTGGTACAAGGCAGAGGGAAATTTGAGGAGCTAATGGTGTGTTCTCAT  2724
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 2725  GAAATTGCTGCTAGCACAGCCCAGCTTGTGGCTGCATCCAAGGTGAAAGCTGATAAGGACAGCCCTAACCTAGC  2798
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 2799  CCAGCTGCAGCAGGCCTCTCGGGGAGTGAACCAGGCCACTGCCGGCGTTGTGGCCTCAACCATTTCCGGCAAAT  2872
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 2873  CACAGATCGAAGAGACAGACAACATGGACTTCTCAAGCATGACGCTGACACAGATCAAACGCCAAGAGATGGAT  2946
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 2947  TCTCAGGTTAGGGTGCTAGAGCTAGAAAATGAATTGCAGAAGGAGCGTCAAAAACTGGGAGAGCTTCGGAAAAA  3020
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 3021  GCACTACGAGCTTGCTGGTGTTGCTGAGGGCTGGGAAGAAGGAACAGAGGCATCTCCACCTACACTGCAAGAAG  3094
                                                                                      
Sbjct 2864  --------------------------------------------------------------------------  2863

Query 3095  TGGTAACCGAAAAAGAA  3111
                             
Sbjct 2864  -----------------  2863

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