Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06682
Subject:
NR_026904.1
Aligned Length:
4045
Identities:
1538
Gaps:
2263

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTTCTCCCTGGCGGTTAGTGCTGAGGCTGAGGACAACATGCATTTACTAAAAATTCAAGAAAAGTCTAAAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCTTTTAAAAATATCCCCTCAAATCGGCATCTACTCCTCCAGAGAGTTACTATAATATTTTTTCTTCCCCTTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATTAAATAACCCTGTCAGCAGCCAAAACCGACCCCACCCGCGGCCCTGCAGCAGCCGTAAGGAGGAACCACGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GACCCAGGCCTTCCCGCCGCCCGAACCGGACACCGGCAGCCAGCAGACAGCGGCGGACAAGCGACCTCGCTCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGCCAGTGAGTTGTTTCTGATTCGGATGATTTTTGTCCCTCGGCGCGTGCCCTTGCTCCCCGCCCCCGGCTGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAGACCCCCGGCCCGGCACTCGCTCTCCTCCTGTCACGAAAGGGTCGCGGCCTGTAGCCCTGTGGGCAGCCGTG  444

Query    1  -----ATGAACCCCAGCACCCCCAGCTACCCAACGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACT  69
                 ||||||||||||.||||||||||||..|.|||||||||.||.|||||||||||.|||||||||||||||
Sbjct  445  CCGCGATGAACCCCAGCGCCCCCAGCTACCACATGGCCTCGCTGTATGTGGGGGACCTGCACCCCGACGTGACT  518

Query   70  GAGGCGATGCTCTACGAGAAGTTCAGCCCGGCAGGGCCCATCCTCTCCATCCGGATCTGCAGGGACTTGATCAC  143
            ||...||||.||.|.||||||||.|||.||.|| ||.|||.||||.||||||||.|||..|||||||.|.||||
Sbjct  519  GAATTGATGTTCCAAGAGAAGTTTAGCTCGACA-GGTCCACCCTCACCATCCGGGTCTTTAGGGACTGGCTCAC  591

Query  144  CAGCGGCTCCTC-----CAACTACGCGTATGTGAACTTCCAGCATACGAAGGACGCGGAGCATGCTCTGGACAC  212
            |     |.||||     ...|||||.||..||||||||||.|||..||...||||||||||.||||||||.|||
Sbjct  592  C-----CACCTCTTCGTGGGCTACGTGTCCGTGAACTTCCTGCAGCCGGCAGACGCGGAGCGTGCTCTGGCCAC  660

Query  213  CATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGAAAAA  286
            ||||||.|||||||||||||||||||||||||||....||.|||||||||||||.||||.|||.||.||.||||
Sbjct  661  CATGAACTTTGATGTTATAAAGGGCAAGCCAGTATAAGTCCTGTGGTCTCAGCGCGATCTATCGCTGCGCAAAA  734

Query  287  GTGGAGTGGGCAACATATTCGTTAAAAATCTGGATAAGTCCATTAATAATAAAGCACTGTATGATACAGTTTCT  360
            ||||||||||||||.|||||||||||||.|.|||.||.|||.|   |.|.||||||||||.||||.||.|||||
Sbjct  735  GTGGAGTGGGCAACGTATTCGTTAAAAACCAGGACAAATCCGT---TGAGAAAGCACTGTGTGATGCATTTTCT  805

Query  361  GCTTTTGGTAACATCCTTTCGTGTAACGTGGTTTGTGATGAAAATGGTTCCAAGGGTTATGGATTTGTACACTT  434
            ||||||||||||.|||||||||||||.||.||||||||||||||||||||.|||||.|.|||||.|||||||||
Sbjct  806  GCTTTTGGTAACTTCCTTTCGTGTAAGGTAGTTTGTGATGAAAATGGTTCTAAGGGCTGTGGATCTGTACACTT  879

Query  435  TGAGACACACGAAGCAGCTGAAAGAGCTATTAAAAAAATGAACGGAATGCTCCTAAATGGTCGCAAAGTATTTG  508
            |||||||||.||||||||||||.||||||||.||||||||.|.||.||||||||.|||||||.|||.|||||||
Sbjct  880  TGAGACACAGGAAGCAGCTGAAGGAGCTATTGAAAAAATGGATGGGATGCTCCTGAATGGTCTCAATGTATTTG  953

Query  509  TTGGACAATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGCAAAAGAGTTCCCCAATGTTTAC  582
            ||||||..||||.|||||.||||||||.||||||.|||||||||||||||||||||||||   ||||.|||   
Sbjct  954  TTGGACGGTTTAGGTCTCCTAAAGAACAAGAAGCAGAACTTGGAGCTAGGGCAAAAGAGT---CCAAAGTT---  1021

Query  583  ATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGTTCGGGCCCGCCTTAAG  656
                                                                        ||.||.||||.|||
Sbjct 1022  ------------------------------------------------------------GGACCTGCCTCAAG  1035

Query  657  TGTGAAAGTAATGACCGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATG  730
            |||.||||||||.||.||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1036  TGTAAAAGTAATAACTGATGAAGGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATC  1109

Query  731  CACAGAAAGCTGTAGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCAGAAA  804
            ||||||.||||.|.||||   ||||||||||||||.|||.||||||.||||.||||.||.|||.|||||.||||
Sbjct 1110  CACAGACAGCTATGGATG---TGAATGGAAAGGAGTTCAGTGGAAATCAAACTTACATTTGTCTAGCTCCGAAA  1180

Query  805  AAAGTGGAACGGCAGACGGAACTTAAGCGCACATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGT  878
            |||||||||..||||||.|||||||||.|||.||||||||||||||||||||||||.||||||||||||||||.
Sbjct 1181  AAAGTGGAAGAGCAGACAGAACTTAAGTGCAAATTTGAACAGATGAAGCAAGATAGAATCACCAGATACCAGGG  1254

Query  879  TGTTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGCGTTTTCTCCATTTG  952
            ||.|||..|||.||||||||||||||||||..|||||||||||||||||||||.|||||..|||||||||||||
Sbjct 1255  TGCTAACGTTTGTGTGAAAAATCTTGATGAGAGTATTGATGATGAACGTCTCCAGAAAGAATTTTCTCCATTTG  1328

Query  953  GTACAATCACTAGTGCAAAGGTTATGATGGAAGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCC  1026
            |||.|||||.|||||||||.|||||||||||.||||||.||||||||.|||||||.||||||||||||||||||
Sbjct 1329  GTATAATCAATAGTGCAAATGTTATGATGGAGGGTGGTTGCAGCAAAAGGTTTGGCTTTGTATGTTTCTCCTCC  1402

Query 1027  CCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTT  1100
            ||||||||||...|||||||||||||||.|||||||||||.|||||||||||..|||||||||.||||||||||
Sbjct 1403  CCAGAAGAAGTAGCTAAAGCAGTTACAGCAATGAACGGTAAAATTGTGGCCAGCAAGCCATTGCATGTAGCTTT  1476

Query 1101  AGCTCAGCGCAAAGAAGAGCGCCAGGCTTACCTCACTAACGAGTATATGCAGAGAATGGCAAGTGTACGAGCTG  1174
            |||||||.||||||||.||||||.||||.||.||||||||.|.||.|||||||..|||||||||||||||||||
Sbjct 1477  AGCTCAGTGCAAAGAACAGCGCCTGGCTCACTTCACTAACCAATACATGCAGAAGATGGCAAGTGTACGAGCTG  1550

Query 1175  TG------------------CCCAACCAGCGAGCACCTCCTTCAGGTTACTTCATGACAGCTGTCCCGCAGACT  1230
            ||                  |||.||||||.|||||||.||.||.||||||||.|..|||||.||||.|||||.
Sbjct 1551  TGCCCCACCCTGTAATCAACCCCTACCAGCCAGCACCTTCTACATGTTACTTCGTAGCAGCTATCCCACAGACC  1624

Query 1231  CAGAACCATGCTGCATACTATCCTCCTAGCCAAATTGCTCGACTAAGACCAAGTCCTCGCTGGACTGCTCAGGG  1304
            |||||||.|||||||||||||||||||.||||||||||||.|||||||||||||||||.||||.|||.||||.|
Sbjct 1625  CAGAACCGTGCTGCATACTATCCTCCTGGCCAAATTGCTCAACTAAGACCAAGTCCTCCCTGGGCTGTTCAGAG  1698

Query 1305  TGCCAGACCTCATCCATTCCAAAATAAGCCCAGTGCTATCCGCCCAGGTGCTCCTAGAGTACCATTTAGTACTA  1378
            ||.|||||||.||||||||| |||||.|.||.|||||||||||.|||.|||||.||    |||    |..|||.
Sbjct 1699  TGTCAGACCTTATCCATTCC-AAATATGACCTGTGCTATCCGCTCAGCTGCTCGTA----ACC----ACCACTC  1763

Query 1379  TGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACGCAGCGTGTTGCTAACACATCAACACAGACAGTG  1452
            |||||||||||||||||||||||||||.|||||||||.||.|||..||||||||||.||||||.|||||||.|.
Sbjct 1764  TGAGACCAGCTTCTTCACAGGTTCCACCAGTCATGTCCACACAGTATGTTGCTAACTCATCAATACAGACAATT  1837

Query 1453  GGTCCACGTCCTGCAGCTGCTGCTGCTGCTGCAGCT--ACCCCTGCTGTGCGCACGGTTCCACGGTATAAATAT  1524
            .|||||.||||||.||||||||||||||     |||  ||.|||||.||...||...||||||.|||.||||||
Sbjct 1838  AGTCCATGTCCTGTAGCTGCTGCTGCTG-----GCTCCACTCCTGCGGTCTACATCATTCCACAGTACAAATAT  1906

Query 1525  GCTGCGGGAGTTCGCAATCCTCAGCAACATCGTAATGCACAGCCACAAGTTACAATGCAACAGCTTGCTGTTCA  1598
            |||.|.|||.|||.||.|||||||||.||||.|||.|||||.|||||.|||||.|.|.|.||||||||||||||
Sbjct 1907  GCTTCAGGAATTCTCATTCCTCAGCAGCATCTTAAAGCACATCCACAGGTTACCAGGAAGCAGCTTGCTGTTCA  1980

Query 1599  TGTACAAGGTCAGGAAAC-TTTGACTGCCTCCAGGTTGGCATCTGCCCCTCCTCAAAAGCAAAAGCAAATGTTA  1671
            |||.|||||||| .|||| |||||||||.||||.|||.|||||||||||||.|||..||||.|||||.||.||.
Sbjct 1981  TGTCCAAGGTCA-AAAACTTTTGACTGCTTCCATGTTAGCATCTGCCCCTCTTCAGCAGCAGAAGCAGATATTG  2053

Query 1672  GGTGAACGGCTCTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGGAAAATCACTGGCATGTTGTTGGA  1745
            ||||||.|.||||||||||||||||||||||.||||||||||||||||||.|||||||||||||||||.|||||
Sbjct 2054  GGTGAAAGACTCTTTCCTCTTATTCAAGCCACGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTATTGGA  2127

Query 1746  GATTGATAATTCAGAACTTCTTTATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAG  1819
            |.|||||||||.|.||||||||.|||||||.|.||||||.|||||.|                |||||||||||
Sbjct 2128  GCTTGATAATTTAAAACTTCTTCATATGCTTGTGTCTCCGGAGTCTC----------------TGAAGCTGTAG  2185

Query 1820  CTGTACTACAAGCCCACCAAGCTAAAGAGGCTACCCAGAAAGCAGTTAACAGTGCTACCGGTGTTCCAACTGTT  1893
            .|||||||||||||.||||.|..|||||||||  ||||||||||.|||||||||||||.|.|||.|||||||.|
Sbjct 2186  TTGTACTACAAGCCTACCATGTGAAAGAGGCT--CCAGAAAGCAATTAACAGTGCTACTGTTGTACCAACTGCT  2257

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2258  TAAAATTGATCAGGGACCACCAAAAAACAAAAAAACAATAAAACAAAAAAAACTTGTGTTTCAACAAAGAAAAA  2331

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2332  TATCTAAACATCAAAAAACTAAAATATTATGGAAAAAAATTACAAAATATAAACAAAAAAGGAAAGCAAACTTT  2405

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2406  GAACCTTATGTACTGAGGAAATACCAAGTCTAGCAAACTTACTAGTCCTAGATTACTTATTGATTTGAAAATAA  2479

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2480  CAGAAAAAAGAAAACAAAAAAATAGGAAAATTTAAAAACAAGCTGGGTGTGGTGGCTCACACATGTAATCCCAG  2553

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2554  CACTTTGGGAGGCTGGGGTGGATCGCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAACCTCA  2627

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2628  TCTCTACTAAAAATGCAAAAAATTAGCTGGGCGTGGTGGTGGGTACCTGTAATACCAGCTACTAGGGAGGCTGA  2701

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2702  GGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCATTGCACTCCAGCCTGG  2775

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2776  GCAACAAGAGCAAAAAAACTCCATCTCAAAAAAAAAAAAAATTAAAAACAAATTAATGTTTTATAGATCCTGGG  2849

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2850  AAAAATAATTTTCAGCAAAGTATGAAAATTTAAAGCATTCCTTTAATTTTTTAACTCTTAACTGTGGAAAAGCT  2923

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2924  CAGAATGTCAGTTATGTTTTAAATAACAGAATTGATAACTAAACAAGGAAATATAACTTGGATTATGAAATTCT  2997

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 2998  TGGTTTAATAAAAATTCTTTAAATGGTTTAAAAAAACCTGAATAGGCTCAAAAACATAAGGTGATTATGCAGTG  3071

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3072  TATGTACACATCAAAGGAAGATGTGGCTGGGTGTGGTGGCTCATGCCTGTCATCCCGTCACTTTGGGAGGCTGA  3145

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3146  GGTGGGAGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAAT  3219

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3220  ACAAAAAATTAGCCGGGCATGGTGGCAGGTGCCTGTAATCCCAGCTATTCAGGAGGCTGAGCCAGCTGCCTGGG  3293

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3294  AGGCAGAGGTTGCAGTGAGCTGAGATCACGCCATTGCACTCCAACCTGGGCAACAGTGCGAGACTCTGTCTCAA  3367

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3368  AAACAAACAACAAAAAAAGAGAGATGTGTATGCATTAATACTAATATGTGAATCAAAGGATTACTCTAATTTTT  3441

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3442  TCCAAAGTAATTGCTTATTTAACCTATTCAACCATTTTGTTTGTTTCAAACCTTAATAGGAATATAAACACAAT  3515

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3516  CTAACTCTCAAACAGGTTAAATCTAAACTCTCTACACCTTTATCTAGCAAGTGCTATGTTGTATAGCTTTCTTC  3589

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3590  ACTGTCACATCACAGCTATGATTTTGTAAAGCATTTATTTTTACCTCATTGGGATTTGTAGCTATTAGAATATC  3663

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3664  AAAGCTATAGGAATATTTCAAATATCCCAAATATAAAAACGAATTTGATTTCAAAGGGAGGTTTTACACATTTA  3737

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3738  AATGCCTGAAAATAAGGGGTATAATAAAGAGCCTGGTAGACTGTTTACTCTGACAATATCACTGAAAATGGCTA  3811

Query 1894  --------------------------------------------------------------------------  1893
                                                                                      
Sbjct 3812  TAAAATATGATGGAAACACTGAAAAATTACCTTTGAGGAGGATGCAGAATCCGTTTTCTTTGTAAACTGACCCT  3885

Query 1894  -------------------------------------------------  1893
                                                             
Sbjct 3886  GAAGATGTGTCAAAACATTTGTAATATCCACAATAAAGAGTCAACGGCA  3934

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