Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06700
Subject:
NM_001191058.4
Aligned Length:
2313
Identities:
1860
Gaps:
417

Alignment

Query    1  ----------------------------------------------------------------ATGG------  4
                                                                            ||||      
Sbjct    1  ATGACGGACGCCGGCAACAGGAAGGAGGGCTTCAAAAAATGCCGGAGCGCCACTTTCAGCATCGATGGCTACAG  74

Query    5  ---------AGTCGCCAACAAA---GGAGATTGAAGAATTTGAGAGC---------------------------  39
                     |||.||.||..||   |||||  .||||||...|||.|                           
Sbjct   75  CTTCACCATAGTTGCAAATGAAGCTGGAGA--CAAGAATGCCAGACCACTGGCCCGCTTCTCTCGGTCTAAGTC  146

Query   40  ----AACTCTCT---GAAATACCTGCAACCGGA-------ACAG--------ATCGAGAA------------AA  79
                ||||.|||   |||.|.||| ||.|  ||       ||||        |..|||||            ||
Sbjct  147  ACAGAACTGTCTGTGGAACTCCCT-CATC--GATGGGCTCACAGGGAATGTCAAGGAGAAGCCAAGGCCAACAA  217

Query   80  TCTG-------GCTTCGGCTCC--GCGG--------GCTGAGGAAAT-----------ATA-------------  112
            | ||       .|.|||.|.||  |.||        |||||.|||.|           |||             
Sbjct  218  T-TGTCCATGACCCTCGACCCCCAGAGGAGATCCTAGCTGATGAATTGCCACAGCTGGATAGCCCAGAAGTCTT  290

Query  113  --AGAAAACGTCCCAGAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTA  184
              .|||.||.|||...||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  GGTGAAGACATCCTTCAGATTACGGTCTTTGGTCAAACAATTAGAGAGAGGGGAAGCTTCAGTGGTAGATCTTA  364

Query  185  AGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACA  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  AGAAGAATTTGGAATATGCAGCCACAGTGCTTGAATCTGTGTATATTGATGAAACAAGGAGACTCCTGGATACA  438

Query  259  GAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCAC  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  GAGGATGAGCTCAGTGACATTCAGTCAGATGCTGTGCCTTCTGAGGTCCGAGACTGGCTGGCCTCCACCTTCAC  512

Query  333  GCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGG  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  GCGGCAGATGGGGATGATGCTCAGGAGGAGCGACGAGAAGCCCCGGTTCAAGAGCATCGTTCACGCAGTGCAGG  586

Query  407  CTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  CTGGGATATTTGTGGAGAGAATGTATAGACGGACATCAAACATGGTTGGACTGAGCTATCCACCAGCTGTTATT  660

Query  481  GAGGCATTAAAGGATGTGGACAAGTGGTCATTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACT  554
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  GAGGCATTAAAGGATGTGGACAAGTGGTCCTTTGACGTCTTTTCCCTCAATGAGGCCAGTGGGGATCATGCACT  734

Query  555  GAAATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTG  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GAAATTTATTTTCTATGAACTACTCACACGTTATGATCTGATCAGCCGTTTCAAGATCCCCATTTCTGCACTTG  808

Query  629  TCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCC  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  TCTCATTTGTGGAGGCCCTGGAAGTGGGATACAGCAAGCACAAAAATCCTTACCATAACTTAATGCACGCTGCC  882

Query  703  GATGTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTT  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  GATGTTACACAGACAGTGCATTACCTCCTCTATAAGACAGGAGTGGCGAACTGGCTGACGGAGCTGGAGATCTT  956

Query  777  TGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTC  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  TGCTATAATCTTCTCAGCTGCCATCCATGACTACGAGCATACCGGAACCACCAACAATTTCCACATTCAGACTC  1030

Query  851  GGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTT  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  GGTCTGATCCAGCTATTCTGTATAATGACAGATCTGTACTGGAGAATCACCATTTAAGTGCAGCTTATCGCCTT  1104

Query  925  CTGCAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGT  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  CTGCAAGATGACGAGGAAATGAATATTTTGATTAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACCTTGGT  1178

Query  999  AATTGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGC  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  AATTGAAATGGTGATGGCCACAGATATGTCTTGTCACTTCCAACAAATCAAAGCAATGAAGACTGCTCTGCAGC  1252

Query 1073  AGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAA  1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  AGCCAGAAGCCATTGAAAAGCCAAAAGCCTTATCCCTTATGCTGCATACAGCAGATATTAGCCATCCAGCAAAA  1326

Query 1147  GCATGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGA  1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  GCATGGGACCTCCATCATCGCTGGACAATGTCACTCCTGGAGGAGTTCTTCAGACAGGGTGACAGAGAAGCAGA  1400

Query 1221  GCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTG  1294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  GCTGGGGCTGCCTTTTTCTCCTCTGTGTGACCGAAAGTCCACTATGGTTGCTCAGTCACAAGTAGGTTTCATTG  1474

Query 1295  ATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAA  1368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  ATTTCATCGTGGAACCCACCTTCACTGTGCTTACGGACATGACCGAGAAGATTGTGAGTCCATTAATCGATGAA  1548

Query 1369  ACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATC  1442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  ACCTCTCAAACTGGTGGGACAGGACAGAGGCGTTCGAGTTTGAATAGCATCAGCTCGTCAGATGCCAAGCGATC  1622

Query 1443  AGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCT  1516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  AGGTGTCAAGACCTCTGGTTCAGAGGGAAGTGCCCCGATCAACAATTCTGTCATCTCCGTTGACTATAAGAGCT  1696

Query 1517  TTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAG  1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  TTAAAGCTACTTGGACGGAAGTGGTGCACATCAATCGGGAGAGATGGAGGGCCAAGGTACCCAAAGAGGAGAAG  1770

Query 1591  GCCAAGAAGGAAGCAGAGGAAAAGGCTCGCATGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCA  1664
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  GCCAAGAAGGAAGCAGAGGAAAAGGCTCGCCTGGCCGCAGAGGAGCAGCAAAAGGAAATGGAAGCCAAAAGCCA  1844

Query 1665  GGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACAC  1738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  GGCTGAAGAAGGCGCATCTGGCAAAGCTGAGAAAAAGACGTCTGGAGAAACTAAGAATCAAGTCAATGGAACAC  1918

Query 1739  GGGCAAACAAAAGTGACAACCCTCGTGGGAAAAATTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAAT  1812
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1919  GGGCAAACAAAAGTGACAACCCTCGTGGGAAAAACTCCAAAGCCGAGAAGTCATCAGGAGAACAGCAACAGAAT  1992

Query 1813  GGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAAC  1886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993  GGTGACTTCAAAGATGGTAAAAATAAGACAGACAAGAAGGATCACTCTAACATCGGAAATGATTCAAAGAAAAC  2066

Query 1887  AGATGATTCACAAGAG----------------------------------------------------------  1902
            |||||...||.||.||                                                          
Sbjct 2067  AGATGGCACAAAACAGCGTTCTCACGGCTCACCAGCCCCAAGCACCAGCTCCACGTGTCGCCTTACGTTGCCAG  2140

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2141  TCATCAAGCCTCCTTTGCGTCATTTTAAACGCCCTGCTTACGCATCTAGCTCCTATGCACCTTCAGTCTCAAAG  2214

Query 1903  --------------------------------------------------------------------------  1902
                                                                                      
Sbjct 2215  AAAACTGATGAGCATCCTGCAAGGTACAAGATGCTGGATCAGAGGATCAAAATGAAAAAGATTCAGAACATCTC  2288

Query 1903  -------------------  1902
                               
Sbjct 2289  ACATAACTGGAACAGAAAA  2307

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