Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06739
Subject:
NM_001316320.2
Aligned Length:
2322
Identities:
2178
Gaps:
141

Alignment

Query    1  ATGCGGCCCCTGCTGCTACTGGCCCTGCTGGGCTGGCTGCTGCTGGCCGAAGCGAAGGGCGACGCCAAGCCGGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCGGCCCCTGCTGCTACTGGCCCTGCTGGGCTGGCTGCTGCTGGCCGAAGCGAAGGGCGACGCCAAGCCGGA  74

Query   75  G-------------------------------------------------------------------------  75
            |                                                                         
Sbjct   75  GGCCCCCTGTTGCCAAGAGGGCCTCAGAGCTGGTGGCTCTGGTTCTCTTCACCTGGGGAGAGACTTCACCGTCC  148

Query   76  --------------------------------------------------------------------GACAAC  81
                                                                                ||||||
Sbjct  149  TGGCAGGAGCTCGGGGGAGCCCTTCCCCAAGTGTGAGCAGCATCCCTCGTTTCTGGATCCCAGGTTCAGACAAC  222

Query   82  CTTTTAGTCCTCACGGTGGCCACTAAGGAGACCGAGGGATTCCGTCGCTTCAAGCGCTCAGCTCAGTTCTTCAA  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTTTTAGTCCTCACGGTGGCCACTAAGGAGACCGAGGGATTCCGTCGCTTCAAGCGCTCAGCTCAGTTCTTCAA  296

Query  156  CTACAAGATCCAGGCGCTTGGCCTAGGGGAGGACTGGAATGTGGAGAAGGGGACGTCGGCAGGTGGAGGGCAGA  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTACAAGATCCAGGCGCTTGGCCTAGGGGAGGACTGGAATGTGGAGAAGGGGACGTCGGCAGGTGGAGGGCAGA  370

Query  230  AGGTCCGGCTGCTGAAGAAAGCTCTGGAGAAGCACGCAGACAAGGAGGATCTGGTCATTCTCTTCACAGACAGC  303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  371  AGGTCCGGCTGCTGAAGAAAGCTCTGGAGAAGCACGCAGACAAGGAGGATCTGGTCATTCTCTTCGCAGACAGC  444

Query  304  TATGACGTGCTGTTTGCATCGGGGCCCCGGGAGCTCCTGAAGAAGTTCCGGCAGTCCAGGAGCCAGGTGGTCTT  377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  445  TATGACGTGCTGTTTGCATCGGGGCCCCGGGAGCTCCTGAAGAAGTTCCGGCAGGCCAGGAGCCAGGTGGTCTT  518

Query  378  CTCTGCTGAGGAGCTCATCTACCCAGACCGCAGGCTGGAGACCAAGTATCCGGTGGTGTCCGATGGCAAGAGGT  451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCTGCTGAGGAGCTCATCTACCCAGACCGCAGGCTGGAGACCAAGTATCCGGTGGTGTCCGATGGCAAGAGGT  592

Query  452  TCCTGGGCTCTGGAGGCTTCATCGGTTATGCCCCCAACCTCAGCAAACTGGTGGCCGAGTGGGAGGGCCAGGAC  525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCCTGGGCTCTGGAGGCTTCATCGGTTATGCCCCCAACCTCAGCAAACTGGTGGCCGAGTGGGAGGGCCAGGAC  666

Query  526  AGCGACAGCGATCAGCTGTTTTACACCAAGATCTTCTTGGACCCGGAGAAGAGGGAGCAGATCAATATCACCCT  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGCGACAGCGATCAGCTGTTTTACACCAAGATCTTCTTGGACCCGGAGAAGAGGGAGCAGATCAATATCACCCT  740

Query  600  GGACCACCGCTGCCGTATCTTCCAGAACCTGGATGGAGCCTTGGATGAGGTCGTGCTCAAGTTTGAAATGGGCC  673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGACCACCGCTGCCGTATCTTCCAGAACCTGGATGGAGCCTTGGATGAGGTCGTGCTCAAGTTTGAAATGGGCC  814

Query  674  ATGTGAGAGCGAGGAACCTGGCCTATGACACCCTCCCGGTCCTGATCCATGGCAACGGGCCAACCAAGCTGCAG  747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATGTGAGAGCGAGGAACCTGGCCTATGACACCCTCCCGGTCCTGATCCATGGCAACGGGCCAACCAAGCTGCAG  888

Query  748  TTGAACTACCTGGGCAACTACATCCCGCGCTTCTGGACCTTCGAAACAGGCTGCACCGTGTGTGACGAAGGCTT  821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTGAACTACCTGGGCAACTACATCCCGCGCTTCTGGACCTTCGAAACAGGCTGCACCGTGTGTGACGAAGGCTT  962

Query  822  GCGCAGCCTCAAGGGCATTGGGGATGAAGCTCTGCCCACGGTCCTGGTCGGCGTGTTCATCGAACAGCCCACGC  895
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCGCAGCCTCAAGGGCATTGGGGATGAAGCTCTGCCCACGGTCCTGGTCGGCGTGTTCATCGAACAGCCCACGC  1036

Query  896  CGTTTGTGTCCCTGTTCTTCCAGCGGCTCCTGCGGCTCCACTACCCCCAGAAACACATGCGACTTTTCATCCAC  969
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGTTTGTGTCCCTGTTCTTCCAGCGGCTCCTGCGGCTCCACTACCCCCAGAAACACATGCGACTTTTCATCCAC  1110

Query  970  AACCACGAGCAGCACCACAAGGCTCAGGTGGAAGAGTTCCTGGCACAGCATGGCAGCGAGTACCAGTCTGTGAA  1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AACCACGAGCAGCACCACAAGGCTCAGGTGGAAGAGTTCCTGGCACAGCATGGCAGCGAGTACCAGTCTGTGAA  1184

Query 1044  GCTGGTGGGCCCTGAGGTGCGGATGGCGAATGCAGATGCCAGGAACATGGGCGCAGACCTGTGCCGGCAGGACC  1117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCTGGTGGGCCCTGAGGTGCGGATGGCGAATGCAGATGCCAGGAACATGGGCGCAGACCTGTGCCGGCAGGACC  1258

Query 1118  GCAGCTGCACCTACTACTTCAGCGTGGATGCTGACGTGGCCCTGACCGAGCCCAACAGCCTGCGGCTGCTGATC  1191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCAGCTGCACCTACTACTTCAGCGTGGATGCTGACGTGGCCCTGACCGAGCCCAACAGCCTGCGGCTGCTGATC  1332

Query 1192  CAACAGAACAAGAACGTCATTGCCCCGCTGATGACCCGGCATGGGAGGCTGTGGTCGAACTTCTGGGGGGCTCT  1265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAACAGAACAAGAACGTCATTGCCCCGCTGATGACCCGGCATGGGAGGCTGTGGTCGAACTTCTGGGGGGCTCT  1406

Query 1266  CAGTGCAGATGGCTACTATGCCCGTTCCGAGGACTACGTGGACATTGTGCAGGGGCGGCGTGTTGGTGTCTGGA  1339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGTGCAGATGGCTACTATGCCCGTTCCGAGGACTACGTGGACATTGTGCAGGGGCGGCGTGTTGGTGTCTGGA  1480

Query 1340  ATGTGCCCTATATTTCAAACATCTACTTGATCAAGGGCAGTGCCCTGCGGGGTGAGCTGCAGTCCTCAGATCTC  1413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATGTGCCCTATATTTCAAACATCTACTTGATCAAGGGCAGTGCCCTGCGGGGTGAGCTGCAGTCCTCAGATCTC  1554

Query 1414  TTCCACCACAGCAAGCTGGACCCCGACATGGCCTTCTGTGCCAACATCCGGCAGCAGGATGTGTTCATGTTCCT  1487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TTCCACCACAGCAAGCTGGACCCCGACATGGCCTTCTGTGCCAACATCCGGCAGCAGGATGTGTTCATGTTCCT  1628

Query 1488  GACCAACCGGCACACCCTTGGCCATCTGCTCTCCCTAGACAGCTACCGCACCACCCACCTGCACAACGACCTCT  1561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GACCAACCGGCACACCCTTGGCCATCTGCTCTCCCTAGACAGCTACCGCACCACCCACCTGCACAACGACCTCT  1702

Query 1562  GGGAGGTGTTCAGCAACCCCGAGGACTGGAAGGAGAAGTACATCCACCAGAACTACACCAAAGCCCTGGCCGGG  1635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1703  GGGAGGTGTTCAGCAACCCCGAGGACTGGAAGGAGAAGTACATCCACCAGAACTACACCAAAGCCCTGGCAGGG  1776

Query 1636  AAGCTGGTGGAGACGCCCTGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGT  1709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AAGCTGGTGGAGACGCCCTGCCCGGATGTCTATTGGTTCCCCATCTTCACGGAGGTGGCCTGTGATGAGCTGGT  1850

Query 1710  GGAGGAGATGGAGCACTTTGGCCAGTGGTCTCTGGGCAACAACAAGGACAACCGCATCCAGGGTGGCTACGAGA  1783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GGAGGAGATGGAGCACTTTGGCCAGTGGTCTCTGGGCAACAACAAGGACAACCGCATCCAGGGTGGCTACGAGA  1924

Query 1784  ACGTGCCGACTATTGACATCCACATGAACCAGATCGGCTTTGAGCGGGAGTGGCACAAATTCCTGCTGGAGTAC  1857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  ACGTGCCGACTATTGACATCCACATGAACCAGATCGGCTTTGAGCGGGAGTGGCACAAATTCCTGCTGGAGTAC  1998

Query 1858  ATTGCGCCCATGACGGAGAAGCTCTACCCCGGCTACTACACCAGGGCCCAGTTTGACCTGGCCTTTGTCGTCCG  1931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ATTGCGCCCATGACGGAGAAGCTCTACCCCGGCTACTACACCAGGGCCCAGTTTGACCTGGCCTTTGTCGTCCG  2072

Query 1932  CTACAAGCCTGATGAGCAGCCCTCACTGATGCCACACCATGATGCCTCCACCTTCACCATCAACATCGCCCTGA  2005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CTACAAGCCTGATGAGCAGCCCTCACTGATGCCACACCATGATGCCTCCACCTTCACCATCAACATCGCCCTGA  2146

Query 2006  ACCGAGTCGGGGTGGATTACGAGGGCGGGGGCTGTCGGTTCCTGCGCTACAACTGTTCCATCCGAGCCCCAAGG  2079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  ACCGAGTCGGGGTGGATTACGAGGGCGGGGGCTGTCGGTTCCTGCGCTACAACTGTTCCATCCGAGCCCCAAGG  2220

Query 2080  AAGGGCTGGACCCTCATGCACCCTGGACGACTCACGCATTACCATGAGGGGCTCCCCACCACCAGGGGCACCCG  2153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AAGGGCTGGACCCTCATGCACCCTGGACGACTCACGCATTACCATGAGGGGCTCCCCACCACCAGGGGCACCCG  2294

Query 2154  CTACATCGCAGTCTCCTTCGTCGATCCC  2181
            ||||||||||||||||||||||||||||
Sbjct 2295  CTACATCGCAGTCTCCTTCGTCGATCCC  2322

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