Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06849
Subject:
XM_011538638.3
Aligned Length:
1450
Identities:
1051
Gaps:
389

Alignment

Query    1  ATGCTGCTATCCGTGACTTCCAGGCCCGGGATTTCGACTTTTGGCTACAATAGAAACAACAAGAAGCCATATGT  74
                                                                                  ||| 
Sbjct    1  ----------------------------------------------------------------------ATG-  3

Query   75  GTCACTGGCTCAGCAGATGGCAC-CACCTAGCCCAAGCAACAGTACACCTAACAGCAGTAGTGGAAGCAATGGA  147
               |||.|.|||  ||||  ||| ||  |||                 ||||.|     ||||           
Sbjct    4  ---ACTTGTTCA--AGAT--CACGCA--TAG-----------------CTAAAA-----AGTG-----------  35

Query  148  AATGACCAGCTGAGCAAAACCAACCTATACATCCGAGGATTGCAACCAGGCACTACTGACCAAG--ATCTTG--  217
                         |||.||||              ||||||..|||||             |||  || |||  
Sbjct   36  -------------GCAGAACC--------------AGGATTTGAACCA-------------AAGCAAT-TTGGC  68

Query  218  TCAAGCTG---TGTC------AGCCATATGGCAAGATTGTTTCCACTAAGGCCATACTGGACAAGACCACAAAC  282
            |||.|.||   | ||      ||..|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   69  TCAGGTTGACCT-TCAATTAAAGGGATATGGCAAGATTGTTTCCACTAAGGCCATACTGGACAAGACCACAAAC  141

Query  283  AAATGTAAAGGCTATGGCTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTGTAACAGCACTGAAGGC  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  142  AAATGTAAAGGCTATGGCTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTGTAACAGCACTGAAGGC  215

Query  357  CAGCGGTGTACAGGCACAGATGGCAAAGCAACAGGAACAGGACCCCACAAATTTATACATCTCAAACCTCCCAC  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  CAGCGGTGTACAGGCACAGATGGCAAAGCAACAGGAACAGGACCCCACAAATTTATACATCTCAAACCTCCCAC  289

Query  431  TGTCAATGGATGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACCCGTATCCTTCGA  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  TGTCAATGGATGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACCCGTATCCTTCGA  363

Query  505  GATACCAGTGGGACCAGCAGAGGTGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTGAAGCCATCATCAC  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  364  GATACCAGTGGGACCAGCAGAGGTGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTGAAGCCATCATCAC  437

Query  579  CCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAGCCCCATCCGATCCCTTGCTTTGCAAATTTG  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  CCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAGCCCCATCCGATCCCTTGCTTTGCAAATTTG  511

Query  653  CTGATGGCGGGCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCTTGGCCAAGGAATGCA  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  512  CTGATGGCGGGCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCTTGGCCAAGGAATGCA  585

Query  727  GACATGGGCGTCATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGGGTTTTACCCAGCCCCCTATAA  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  586  GACATGGGCGTCATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGGGTTTTACCCAGCCCCCTATAA  659

Query  801  CATCACCCCCAACAGGATGCTTGCTCAGTCTGCACTCTCCCCATACCTTTCCTCTCCTGTGTCTTCGTATCAGA  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  660  CATCACCCCCAACAGGATGCTTGCTCAGTCTGCACTCTCCCCATACCTTTCCTCTCCTGTGTCTTCGTATCAGA  733

Query  875  GAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCCTGGATGCACCACCATTCATACCTCATGCAGCCT  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  734  GAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCCTGGATGCACCACCATTCATACCTCATGCAGCCT  807

Query  949  TCAGGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGATGGGACCCCTTAC  1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  808  TCAGGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGATGGGACCCCTTAC  881

Query 1023  CCAGCAACTGGGCCATCTCTCCCTCAGCAGCACAGGCACGTATATGCCGACGGCTGCAGCTATGCAAGGAGCTT  1096
            ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct  882  CCAGCAACTGGGCCATCTCTCCCTCAGCAGCACA-----GTATATGCCGACGGCTGCAGCTATGCAAGGAGCTT  950

Query 1097  ACATCTCCCAGTACACCCCTGTGCCTTCTTCCAGTGTTTCAGTCGAGGAGAGCAGCGGCCAACAGAACCAAGTG  1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  951  ACATCTCCCAGTACACCCCTGTGCCTTCTTCCAGTGTTTCAGTCGAGGAGAGCAGCGGCCAACAGAACCAAGTG  1024

Query 1171  GCAGTGGACGCACCCTCAGAGCATGGGGTCTATTCTTTCCAGTTCAACAAG-----------------------  1221
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct 1025  GCAGTGGACGCACCCTCAGAGCATGGGGTCTATTCTTTCCAGTTCAACAAGTAACAGTGGGCCTGGGCCTGGAA  1098

Query 1222  --------------------------------------------------------------------------  1221
                                                                                      
Sbjct 1099  AAAGAAATCTCTACGTTCCTGCCCTTTACTATTGCTGATGGAGCCTGGGGGAACCATCACTTTTTTTGTGTGCT  1172

Query 1222  --------------------------------------------------------------------------  1221
                                                                                      
Sbjct 1173  ACATTCAAGGAGATCAAAAAAACTTTTCTTCTTTTGCAAAGAAAGCTTTTTGTTTTTAACTGCAACGTACTTTT  1246

Query 1222  --------------------------------------------  1221
                                                        
Sbjct 1247  CCCCTACCTTGAAGAGACATGGTGGTCGCAGCTTCTCATCTATA  1290

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