Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07005
- Subject:
- XR_002957184.1
- Aligned Length:
- 5111
- Identities:
- 2210
- Gaps:
- 2856
Alignment
Query 1 ATGGCCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GAGCAGGTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCCAGCTCCCGGGTGCTCCTCAAGGACCGGCACCCCCCAGCT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CCTTCACCCCAGAATCCTCAAGATCCCTCCCCAGATACTTCCCCACCCACCTGTCCCTTCAAGACCGCCAGCTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGGTTATTTGGACAGAAGCCCTTCGGCGTGCAAGAGAGACGCCCAAAAGGAAAGTGTCCAAGGCGCAGCCCAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATGTAGCAGGGGTCGCTGCCTGCCTCCCCCTTGCCCAGAGCACGCCATTCCCGGGGCCAGCAGCTGGCCCCCGG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GGCGTCTTGCTGACCCGTACCGGTACCCGCGCCCACAGCCTGGGCATCCGGGAGAAGATATCAGCATGGGAAGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TCGCCGAGAGGCGTCGCCCAGGATGAGCATGTGTGGAGAGAAGCGGGAGGGCTCTGGGAGCGAGTGGGCGGCCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGAGGGCTGCCCCAGCCTGGGCTGTCCCAGCGTGGTGCCGTCCCCCTGCAGCTCTGAAAAGACCTTTGATTTC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAGGGCCTCCGGAGGATGAGCAGGACCTTCTCCGAGTGTTCCTACCCAGAGACTGAGGAGGAGGGAGAGGCGCT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CCCTGTCCGGGACTCTTTCTACCGGCTGGAGAAACGGCTGGGCCGGAGTGAGCCCAGCGCCTTCCTCAGGGGGC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 ATGGCAGCAGGAAGGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAGGTCCTGAAGGAGCAGCCG 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 GGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTGGACCGGGGGAAAAGGAACACTGGAACCTTGGG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 CTCCTTGGAGGAGCCGGCAGGGGGCGCGAGTGTGAGCGCTGGCAGCCGGGCAG-TCGGAGTGGCTGGTGTTGCG 1035
|..|| ||.|| | |||.|.|||.|
Sbjct 1 ---------------------------------------TTTCA----GGAAGAT--GAGAGACTGCT------ 23
Query 1036 GGGGAGGCGGGCCCACCCCCAGAGAGGGAAGGCAGTGGTTCCACTAAG-CCCGGGACCCCTGG--AAATAGCCC 1106
.||||| |||| ||.|.||.||| |.|| |||.| |.|||| |||
Sbjct 24 ---TAGGCG---CCAC----------------CACTAGTACCA-TGAGTCCCTG---CACTGGTTAAA------ 65
Query 1107 TAGCTCCCAGCGGCTGCCATCG----AAGAGTTCCCTCGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGC 1176
||||||| || |||.|| |..||.| ||||.||
Sbjct 66 ---------------GCCATCGCCACAA------CCTGGA-CAGGCAG-------------------CAAGGGC 98
Query 1177 AC---CTTTGAATACGAG-GCTGACAAGAACCCCAAGAGTAAGCC--CAGTAATGGTCTACCTCCTTCACCCAC 1244
.| .||||.| ||| ||.||.|.|| |||.||.| ||| ||..|| |.||..|.||||||||
Sbjct 99 TCTGGGTTTGCA---GAGAGCCGAAATGA---CCATGACT--GCCAACAAGAA-----TTCCAGCATCACCCAC 159
Query 1245 --ACCTGCTGCTCCACCTCCCTTGCCCTCCACCCCAGCCCCGCCAGTCACCCGGAGACCCAAGAAGGACATGCG 1316
|.|||.|| ||.||..|.||| |.|||.|
Sbjct 160 GGAGCTGGTG-------------GCACTAAAGCCC--------------CTCGGGG------------------ 188
Query 1317 TGGTCACCGCAAGTCCCAGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCT 1390
|.|.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ------------GACTCTGAGCAGAAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCT 250
Query 1391 CTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTAT 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTAT 324
Query 1465 GAAGATATTGTGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACG 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GAAGATATTGTGGGAGATCTGCCCAAGGAGAATCCATATGAGGATGTGGACTTAAAGAGCCGAAGAGCAGGACG 398
Query 1539 AAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACA 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AAAATCCCAGCAACTGTCTGAGAACTCCTTGGACTCTTTGCACAGGATGTGGAGTCCTCAGGACAGGAAGTACA 472
Query 1613 ACAGCCCGCCCACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAG 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACAGCCCGCCCACACAGCTTTCCCTGAAACCCAACAGCCAGTCCCTGCGCAGTGGGAACTGGTCAGAAAGGAAG 546
Query 1687 AGCCACCGGCTGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCC 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGCCACCGGCTGCCACGATTACCCAAGAGGCACAGCCATGACGACATGCTGCTGCTGGCTCAGCTGAGTCTGCC 620
Query 1761 GTCCTCACCCTCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCC 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GTCCTCACCCTCCAGCCTCAATGAAGACAGCCTCAGCACCACCAGCGAGCTGCTGTCCAGCCGCCGGGCCCGCC 694
Query 1835 GCATTCCCAAGCTTGTCCAAAGAACTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTG 1908
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GCATTCCCAAGCTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTG 768
Query 1909 TCTATGTCCAGCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTT 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCTATGTCCAGCATTGAAACAGCATCACTGAGAGATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTT 842
Query 1983 CAAAGCCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGC 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CAAAGCCCACACACAGCGCCTGGTCCACATCCAGTCGATGCTGAAGCGCGCCCCCAGCTATCGCACGCTGGAGC 916
Query 2057 TGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCG 2130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGGAGCTGCTGGAGTGGCAGGAGCGGGAGCTTTTTGAGTACTTTGTGGTGGTGTCCCTCAAGAAGAAGCCATCG 990
Query 2131 CGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGC 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CGAAACACCTACCTCCCCGAAGTCTCCTACCAGTTTCCCAAGCTGGACCGACCCACCAAGCAGATGCGAGAGGC 1064
Query 2205 AGAGGAAAGGCTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATA 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGAGGAAAGGCTCAAAGCCATTCCCCAGTTTTGCTTCCCTGATGCCAAGGACTGGCTTCCTGTGTCAGAGTATA 1138
Query 2279 GCAGTGAGACCTTTTCTTTCATGCTGACTGGGGAAGATGGCGGCAGACGCTTTGGCTACTGCAGGCGCTTAC-- 2350
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1139 GCAGTGAGACCTTTTCTTTCATGCTGACTGGGGAAGATGGCAGCAGACGCTTTGGCTACTGCAGGCGCTTACTG 1212
Query 2351 ----------------------------------------------------------TGCCAAGTGGGAAAGG 2366
||||||||||||||||
Sbjct 1213 TTTGCTCTCTTAGAATGGAGGTGGATCAAGAAAGGGAGAAAAGAAGCAAAAAAAGGAATGCCAAGTGGGAAAGG 1286
Query 2367 GCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATG 2440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GCCCCGGTTGCCAGAGGTGTACTGTGTCATCAGCCGCCTTGGCTGCTTCGGCTTGTTTTCCAAGGTCCTAGATG 1360
Query 2441 AGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTC 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 AGGTGGAGCGCCGGCGTGGGATCTCCGCTGCATTGGTCTATCCTTTCATGAGAAGTCTCATGGAGTCGCCCTTC 1434
Query 2515 CCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCG 2588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CCAGCCCCAGGGAAGACCATCAAAGTGAAGACATTCCTGCCAGGTGCTGGCAATGAGGTGTTAGAGCTGCGGCG 1508
Query 2589 GCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCC 2662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GCCCATGGACTCAAGGCTGGAGCACGTGGACTTTGAGTGCCTTTTTACCTGCCTCAGTGTGCGCCAGCTCATCC 1582
Query 2663 GAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGC 2736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GAATCTTTGCCTCACTGCTGCTGGAGCGCCGGGTCATTTTTGTGGCAGATAAGCTCAGTACCCTCTCCAGCTGC 1656
Query 2737 TCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCAT 2810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TCCCACGCGGTGGTGGCCTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCAT 1730
Query 2811 GATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGC 2884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GATTGACATCGTCTGCTGTCCCACCCCCTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGC 1804
Query 2885 TGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACG 2958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 TGCCTGTGGAGGAGGCGCTGATGGTGAATCTGGGATCTGACCGATTCATCCGACAGATGGACGACGAAGACACG 1878
Query 2959 TTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTC 3032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TTGTTACCTAGGAAGTTACAGGCAGCTCTGGAGCAGGCTCTGGAGAGGAAGAATGAGCTGATCTCCCAGGACTC 1952
Query 3033 TGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGG 3106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TGACAGCGACTCCGACGATGAATGTAATACCCTCAATGGGCTGGTGTCGGAGGTGTTTATCCGGTTCTTTGTGG 2026
Query 3107 AGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTC 3180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 AGACCGTTGGGCACTACTCCCTCTTTCTGACACAGAGTGAGAAGGGAGAGAGGGCCTTTCAGCGAGAGGCCTTC 2100
Query 3181 CGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTT 3254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 CGCAAATCTGTGGCCTCCAAAAGCATCCGCCGCTTTCTTGAGGTTTTTATGGAGTCTCAGATGTTTGCTGGCTT 2174
Query 3255 CATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAG------------------------------------- 3291
|||||||||||||||||||||||||||||||||||||
Sbjct 2175 CATCCAAGACAGGGAGCTAAGAAAGTGTCGGGCAAAGGGTAAGTCTTGGTTATCAGCTCTCTTCTCTAATTTTT 2248
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2249 TCACCCACAGCAGGGCTGAAGAACCAGGCACTATGATGGAAGCTCTTGGACATCAGCTAGGGCCAGGCCTCTTA 2322
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2323 ACATCCCTTTACCTCTGTTAGAAACTTCAAGGTAGCATTCTTCTCCTCCGGCCCCAGTAAATGCCTTCACAAGG 2396
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2397 CTATGCACAAGCTAAGCCACATGGCTAGAGGTAGGACTCATCTCCACCTAGGAGCAGCATGCCATTGGTTGCCC 2470
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2471 ACCCCCTCCTCAAAGAGAAAGATAGGAGAAAGCCCTTCTATCCAGAGAAAAGGAGCAGACTGAGCAATTTCGGG 2544
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2545 GGTTCTGAGAACCCAGTGGTTGGGAATTCCCTTACAGAGCATTGGGCCAGCTGTCGTAGGTTGGTGGCAGTCTT 2618
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2619 CATTTAAGGCAGATGGTTATCTTGTTTTTTGCTATTTCATCAGCTCATTCGAGGGCTTTTTCATCTCATCACAA 2692
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2693 TTTTTCTGTCTAACCTCAGGGTTAGTACTTCTTCTGTCCTCTAATACTATCCATTTAGTATAACAACCTTTTTG 2766
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2767 GAACAACATGGTAGAGTTGTCTGAAGGAAGCTAGAGATGTCCACTTGGGGCAGCTCTGAACTGAGAAGCAGCCT 2840
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2841 CCTCACCTAGTGCAGCTTGGGAATGTGCATGGGGAGGCAGGGTGGCAGCAGCAAACCCCGGCAAGATGTCACTA 2914
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2915 ATGATCGCCTTGATGAGCCAGCCCGAATTCTAGTAAGATGCTCCTGCAAATTATCATCCCAGATGTTTTCTTTC 2988
Query 3292 -------------------------------------------------------------------------- 3291
Sbjct 2989 TCCTTTTTTGGCATCTGTGCTCCATGGTTCCCTTCATGTAGGCCTCTCCTTCCCTTCCTCCAATGACTGTTCTC 3062
Query 3292 --------------------------GGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGAC 3339
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3063 TTCCCTGTGCCTGTTTCTTTTACCCAGGCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGAC 3136
Query 3340 ACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCACAAGAAGAAT-- 3411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3137 ACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGGGCAACAAAATGAAGTTTCTCCACAAGAAGAATTA 3210
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3211 AGCCTCCTTCTCAGTAGCAGAGTCCAGTGCCTTGCAGAGCCTGAAGCCTGGGGAGAAGGCCCAGCCTGGGACCC 3284
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3285 TCTGGGCTGCTGTGGCTCCTCTGCCCCCACAGATCCTATCCTCCAAGCCAGCCCACCTCTGCCTTCATCATATC 3358
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3359 CCAGGATACTGTTTGTAAATAATCTGCTGTAAGCTTTCTTAACTGTTTTTTGTAACAAGCAAAGAGAATATGGC 3432
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3433 AAATATTTGTATATTCCCAAGGGGCCGGGTGCTTTCCTGTCCTGCCAGAGCATGGATGAAGTTTCGCTGGGTGC 3506
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3507 TCGTGACTGGCCAGTTTTGTGCAGCTGACTGTCTCAGCCAAACCACTGATCTTCCCTGGAGGCCTTCGGCCTGC 3580
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3581 CTGCCTGCCTGAGGTCCCCGCTGCCAGTCCCGGGCCCTGGAGAGCAGATGCTGTCTTGTTATGTACAGGAGGAC 3654
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3655 CTTTTAAAAAAATCAAGTTTCTATTTTTTGCTGGTAGTCCGCATACCCATACCCTCTGTTTTTGAAAGGCAAAG 3728
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3729 GCCAATCAGTCCCCATTTGTAGCATGGCACCAGGGTCTTAGGCCTAGTCCTCTCATTCCTCCCACCCTCCGAGA 3802
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3803 TGGTCAGTGTGTCATGGGAAGCCCACCCCCAGCTCTGCCAGTGCTCTCTGGGCCTGGCTCCCAGTCAGTGGTGG 3876
Query 3412 -------------------------------------------------------------------------- 3411
Sbjct 3877 CCACGATGCGGTACAGGGCATCCCTCCTTCCCATCTACGGGTGTTCTCAATAAACAATGTACAGTTGTTTGGGC 3950
Query 3412 ----- 3411
Sbjct 3951 CCAGA 3955