Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07245
Subject:
NM_001163557.1
Aligned Length:
2735
Identities:
2285
Gaps:
130

Alignment

Query    1  ATGGCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCAAATGGACGGGATCATTGCAGGCACTAAAAC  74
            |||.|||||||.|||||||||..|||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct    1  ATGACTTCTGACGCTAGTCATATGCTGGAAGCTGCCCTGGAGCAGATGGACGGGATCATTGCAGGCACTAAAAC  74

Query   75  AGGTGCAGATCTTAGTGATGGTACTTGTGAGCCTGGACTGGCTTCCCCGGCCTCCTACATGAACCCCTTCCCGG  148
            ||.|||||||.|||||||||||||.|||||||||||.|||.||.||||..||.|||.|.|||||.||.|.||.|
Sbjct   75  AGCTGCAGATTTTAGTGATGGTACCTGTGAGCCTGGGCTGTCTCCCCCATCCACCTGCTTGAACTCCATGCCTG  148

Query  149  TGCTCCATCTCATCGAGGACTTGAGGCTGGCCTTGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCCTG  222
            |||||||||||||.||||||.||||.||.||||||||||||.|||..|||||||||||.||||.||||||||||
Sbjct  149  TGCTCCATCTCATTGAGGACCTGAGACTAGCCTTGGAGATGTTGGCACTTCCTCAGGAAAGAGAAGCCCTCCTG  222

Query  223  AGCCAGATCCCTGGCCCAACAGCTGCCTACATAAAGGAATGGTTTGAAGAGAGCTTGTCCCAGGTAAACCACCA  296
            ||||||.|||||||||||||||||.|||||||||||||.||||||||.||.|||||||||||||||||.|||||
Sbjct  223  AGCCAGGTCCCTGGCCCAACAGCTACCTACATAAAGGAGTGGTTTGAGGACAGCTTGTCCCAGGTAAATCACCA  296

Query  297  CAGTGCTGCTAGTAATGAAACCTACCAGGAACGCTTGGCACGTCTAGAAGGGGATAAGGAGTCCCTCATATTGC  370
            |.||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||||||.|.|
Sbjct  297  CGGTGCTGCTAGTAATGAAACCTACCAGGAACGCCTGGCACGGCTAGAAGGAGATAAAGAGTCCCTCATACTAC  370

Query  371  AGGTGAGTGTCATCACAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGAGACCTGGAAGTGTGTCTGGAAGGA  444
            |||||||.|||.|||||||.|||||.||||||||.|||||.||||||||.|||||.|||||||||||||||||.
Sbjct  371  AGGTGAGCGTCCTCACAGATCAAGTGGAAGCCCAAGGAGAGAAGATTCGGGACCTTGAAGTGTGTCTGGAAGGC  444

Query  445  CACCAGGTGAAACTCAATGCTGCTGAAGAGATGCTTCAACAGGAGCTGCTAAGCCGCACATCTCTTGAGACCCA  518
            |||||||||||.|||||||||||.||||||||||||||.||||||||||||||.|||||||||||.||||||||
Sbjct  445  CACCAGGTGAAGCTCAATGCTGCAGAAGAGATGCTTCAGCAGGAGCTGCTAAGTCGCACATCTCTGGAGACCCA  518

Query  519  GAAGCTCGATCTGATGACTGAAGTGTCTGAGCTGAAGCTCAAGCTGGTTGGCATGGAGAAGGAGCAGAGAGAGC  592
            ||||.|.||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||.||||.|||.|
Sbjct  519  GAAGTTGGATCTGATGACTGAGGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGGAAAAAGAACAGAAAGAAC  592

Query  593  AGGAGGAGAAGCAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTCAGGCACCTCAAAATCAAAGTGGAAGAGTTG  666
            |.||.||.||.||||||||||||||||||||||||||||||||.|.|||||||||||||||.|||||.|||.||
Sbjct  593  AAGAAGAAAAACAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTG  666

Query  667  GAAAATGAAAGGAATCAGTATGAATGGAAGCTAAAGGCCACTAAGGCTGAAGTCGCCCAGCTGCAAGAACAGGT  740
            ||.||.||..||||.||||||||.|||.||||.||||||||.||||||||.||.||||||||||||||||||||
Sbjct  667  GAGAACGAGCGGAACCAGTATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCCAGCTGCAAGAACAGGT  740

Query  741  GGCCCTGAAAGATGCAGAAATTGAGCGTCTGCACAGCCAGCTCTCCCGGACAGCAGCTCTCCACAGTGAGAGTC  814
            ||||||.|||||||||||||||||||||||.|||||||||||||||||||..||||||||||||||.||   .|
Sbjct  741  GGCCCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGA---CC  811

Query  815  ACACAGAGAGAGACCAAGAAATTCAACGTCTGAAAATGGGGATGGAAACTTTGCTGCTTGCCAATGAAGATAAG  888
            |..|||||.||||.||||||||.||.|||||||||||||||||||||||..|||||.||||||||||.||||||
Sbjct  812  ATGCAGAGCGAGATCAAGAAATCCACCGTCTGAAAATGGGGATGGAAACACTGCTGGTTGCCAATGAGGATAAG  885

Query  889  GACCGTCGGATAGAGGAGCTTACGGGGCTGTTAAACCAGTACCGGAAGGTAAAGGAGATTGTGATGGTCACTCA  962
            ||||||||||||||||||||.||.||||||||.|||.||||||..|.||||||||||||||||||||..|||||
Sbjct  886  GACCGTCGGATAGAGGAGCTGACAGGGCTGTTGAACAAGTACCTAAGGGTAAAGGAGATTGTGATGGCAACTCA  959

Query  963  AGGGCCTTCGGAGAGAACTCTCTCAATCAATGAAGAAGAACCGGAGGGAGGTTTCAGCAAGTGGAACGCTACAA  1036
            .||||||||.||.|||||.|||||.|||||||||||.|||...||||||.|.|||.|.||.|||||..|.||||
Sbjct  960  GGGGCCTTCAGAAAGAACCCTCTCCATCAATGAAGATGAAATAGAGGGAAGCTTCCGAAAATGGAATACCACAA  1033

Query 1037  ATAAGGACCCTGAAGAATTATTTAAACAAGAGATGCCTCCAAGATGTAGCTCTCCTACAGTGGGGCCACCTCCA  1110
            ||||...|||.||.|||.|....||.||||||||..|.|||.||||.||||||||.||....||.||||||||.
Sbjct 1034  ATAAAAGCCCAGAGGAAGTCCCGAAGCAAGAGATATCACCACGATGCAGCTCTCCCACCCCAGGACCACCTCCT  1107

Query 1111  TTGCCACAGAAATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCTTGTAGTCTAGAAGACTTGAGAAGTGAATC  1184
            ||||||||||||||||||||.|.||||||||||||.||.|||||.||.||||||||||||||||||.|||||||
Sbjct 1108  TTGCCACAGAAATCACTGGAGAGCAGGGCTCAGAAGAAACTCTCCTGCAGTCTAGAAGACTTGAGACGTGAATC  1181

Query 1185  TGTGGATAAGTGTATGGATGGGAACCAGCCCTTCCCGGTGTTAGAACCCAAGGACAGCCCTTTCTTGGCGGAGC  1258
            ||.||||||||||.|.|||||||||||||..|.|||.|||..|||.||||||||||||.|||||.|.|||||||
Sbjct 1182  TGGGGATAAGTGTGTCGATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAGC  1255

Query 1259  ACAAATATCCCACTTTACCTGGGAAGCTTTCAGGAGCCACGCCCAATGGAGAGGCTGCCAAATCTCCTCCCACC  1332
            |.|||||.|||||.||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||  
Sbjct 1256  AGAAATACCCCACATTACCTGGGAAGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCAAATCTCCTCCCA--  1327

Query 1333  ATCTG-------CCAGCCTGACGCCACGGGGAGCAGCCTGCTGAGGCTGAGAGACACAGAAAGTGGCTGGGATG  1399
              |||       ||||||||||.|..|.||||||||||.||..|.||||||||||||||||.|.||||||||.|
Sbjct 1328  --CTGCCTCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGAGAGACACAGAAGGAGGCTGGGAAG  1399

Query 1400  ACACTGCTGTGGTCAATGACCTCTCATCCACATCATCGGGCACTGAATCAGGTCCTCAGTCTCCTCTGACACCA  1473
            |.|..|               |||||||..|.||.||.||.|||||.|||.|.|||||||||||..||||||||
Sbjct 1400  ATATAG---------------TCTCATCTGCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCGTGACACCA  1458

Query 1474  GATGGTAAACGGAATCCCAAAGGCATTAAGAAGTTCTGGGGAAAAATCCGAAGAACTCAGTCAGGAAATTTCTA  1547
            |||||.|||||||..|||||||||||||||||||||||||||||.|||||||||||||||||.|||||.|||.|
Sbjct 1459  GATGGCAAACGGAGCCCCAAAGGCATTAAGAAGTTCTGGGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAA  1532

Query 1548  CACTGACACGCTGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAGACTCTCTAGGA  1621
            .|||||..|.|.|||||||||||||||||||||||||||||||||.|||||.||.||.|||||.||.|||||||
Sbjct 1533  TACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGA  1606

Query 1622  CCAGGGACTCCAAGGGACAGAAAAGTGACGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAGCGTGTGTGTGCA  1695
            ||||||||.||||||||||||||.||||.||||||||||||||||||||||||||||||||.||.||.|||.||
Sbjct 1607  CCAGGGACACCAAGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTACA  1680

Query 1696  TGGCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCAGGCAGTGGGTATCTTCTGGCCACACCTTATT  1769
            |||.|||||||.||.|||||||.|||||||||||||||||||||.||||||||..|.|||||.||.||..||.|
Sbjct 1681  TGGATGGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTGCCAGACAGTGGGTGACATCTGGACATACACTACT  1754

Query 1770  GACAGCCACCCCTCAGGACATGGAAAAGGAGCTAGGAATTAAGCACCCACTCCACAGGAAGAAGCTTGTTTTAG  1843
            ||||||.|||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||||.|||||||
Sbjct 1755  GACAGCTACCCCTCAGGACATGGAAAAGGAGCTAGGGATTAAACACCCCCTCCACAGGAAGAAGCTGGTTTTAG  1828

Query 1844  CAGTGAAAGCCATCAACACCAAACAGGAGGAGAAGTCTGCACTGCTAGACCACATTTGGGTGACAAGGTGGCTT  1917
            ||||||||||.||||||.||||.||.||.||.|.||||||.|||||.||||||||||||||||||.||||||||
Sbjct 1829  CAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGTGACACGGTGGCTT  1902

Query 1918  GATGATATTGGCTTACCCCAGTACAAAGACCAGTTTCATGAATCTAGAGTTGACGGACGAATGCTGCAATACCT  1991
            ||||||||||||||||||||.|||||||||||||||||||||||.||||||||.||.|||||||||||||||||
Sbjct 1903  GATGATATTGGCTTACCCCAATACAAAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAATGCTGCAATACCT  1976

Query 1992  AACTGTGAACGATTTACTCTTCTTAAAAGTCACCAGCCAACTACATCATCTCAGCATCAAATGTGCCATTCACG  2065
            |||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1977  AACTGTGAATGATCTACTCTTCTTAAAAGTCACCAGCCAACTACATCATCTCAGCATCAAATGTGCTATTCACG  2050

Query 2066  TGCTGCATGTCAACAAGTTCAACCCCCACTGCCTGCACCGGCGGCCAGCTGATGAGAGTAACCTTTCTCCTTCA  2139
            ||||.|||||||||||||||||||||.|||||||||||.||.||||.||||||||||||||||||||.|||||.
Sbjct 2051  TGCTACATGTCAACAAGTTCAACCCCAACTGCCTGCACAGGAGGCCTGCTGATGAGAGTAACCTTTCCCCTTCC  2124

Query 2140  GAAGTTGTACAGTGGTCCAACCACAGGGTGATGGAGTGGTTACGATCTGTGGACCTGGCAGAGTATGCACCCAA  2213
            ||||||||.||||||||||||||||||||.|||||||||.|.|||||.||||||||||||||||||||||||||
Sbjct 2125  GAAGTTGTGCAGTGGTCCAACCACAGGGTAATGGAGTGGCTGCGATCCGTGGACCTGGCAGAGTATGCACCCAA  2198

Query 2214  TCTTCGAGGGAGTGGAGTCCATGGAGGCCTCATTATCCTGGAGCCACGCTTCACTGGGGACACCCTGGCTATGC  2287
            .||||||||||||||.||||||||.||||||||||||||||||||.|||||.||||||||||||||||||||||
Sbjct 2199  CCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTATCCTGGAGCCTCGCTTTACTGGGGACACCCTGGCTATGC  2272

Query 2288  TTCTCAACATCCCCCCACAAAAGACGCTCCTCAGGCGCCACCTGACCACCAAGTTCAATGCCTTGATTGGTCCG  2361
            ||||.||||||||||||||.||||||||||||||||||||.|||||||||||||||||.|||.||||||||||.
Sbjct 2273  TTCTTAACATCCCCCCACAGAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTTCAACGCCCTGATTGGTCCT  2346

Query 2362  GAGGCTGAACAGGAAAAGCGAGAGAAAATGGCCTCACCAGCTTACACACCACTGACCACCACAGCCAAAGTCCG  2435
            |||||||||||||||||||||||.||||||||||||||.||.||||||||.|||||||||||.||||||||.||
Sbjct 2347  GAGGCTGAACAGGAAAAGCGAGACAAAATGGCCTCACCCGCCTACACACCTCTGACCACCACCGCCAAAGTTCG  2420

Query 2436  GCCAAGGAAACTAGGATTTTCACACTTCGGAAACATAAGAAAAAAGAAGTTCGATGAATCGACGGACTACATTT  2509
            |||.||||||||.|||||||||||.||.||||||||.||||||||||||||.||||||||.||.||.|||||||
Sbjct 2421  GCCTAGGAAACTTGGATTTTCACATTTTGGAAACATGAGAAAAAAGAAGTTTGATGAATCTACAGATTACATTT  2494

Query 2510  GCCCAATGGAGCCCAGTGACGGTGTCAGTGATAGTCACAGGGTCTACAGTGGCTACCGGGGCCTCAGCCCCCTT  2583
            ||||.||||||||..|.||.|.|||||||||.||.||||||||||||.|.|.|||||||||||||||.||||||
Sbjct 2495  GCCCCATGGAGCCTGGAGATGCTGTCAGTGACAGCCACAGGGTCTACGGAGTCTACCGGGGCCTCAGTCCCCTT  2568

Query 2584  GATGCCCCTGAACTGGATGGGCTGGACCAG---------------------GTGGGACAGATCAGC--------  2628
            ||...||.||||||.|||||..||||||||                     |||..|||||| ||.        
Sbjct 2569  GACAACCATGAACTAGATGGTTTGGACCAGATGGCACCTTCCGAAGGCACTGTGACACAGAT-AGGGCTCCTCT  2641

Query 2629  -----------------------------------------------------------------------  2628
                                                                                   
Sbjct 2642  CCCAAGACATCCACCGCCTCACGACTCTACTGAGCCAGGACCAACTCCTGAATGACCCGCCTGGCTGTCCC  2712

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