Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07245
Subject:
NM_001256569.1
Aligned Length:
2638
Identities:
2174
Gaps:
449

Alignment

Query    1  ATGGCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCAAATGGACGGGATCATTGCAGGCACTAAAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGGTGCAGATCTTAGTGATGGTACTTGTGAGCCTGGACTGGCTTCCCCGGCCTCCTACATGAACCCCTTCCCGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGCTCCATCTCATCGAGGACTTGAGGCTGGCCTTGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCCTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGCCAGATCCCTGGCCCAACAGCTGCCTACATAAAGGAATGGTTTGAAGAGAGCTTGTCCCAGGTAAACCACCA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAGTGCTGCTAGTAATGAAACCTACCAGGAACGCTTGGCACGTCTAGAAGGGGATAAGGAGTCCCTCATATTGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGGTGAGTGTCATCACAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGAGACCTGG--AAGTGTGTCTGGAAG  442
                                                                 .|||  ||||       .||.
Sbjct    1  -----------------------------------------------------ATGGGAAAGT-------TAAT  14

Query  443  GACACCAG---GTGAAACTCAATGCTGCTGAAGAGA-----TGCTTCAACAGGAGCTGCTAAGCCGCACATCTC  508
            .|||  ||   |||.||      |||..|||.||||     |||..|.| |.||||||||||||||||||||||
Sbjct   15  AACA--AGGATGTGGAA------GCTATTGAGGAGACGGAGTGCGCCTA-AAGAGCTGCTAAGCCGCACATCTC  79

Query  509  TTGAGACCCAGAAGCTCGATCTGATGACTGAAGTGTCTGAGCTGAAGCTCAAGCTGGTTGGCATGGAGAAGGAG  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   80  TTGAGACCCAGAAGCTCGATCTGATGACTGAAGTGTCTGAGCTGAAGCTCAAGCTGGTTGGCATGGAGAAGGAG  153

Query  583  CAGAGAGAGCAGGAGGAGAAGCAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTCAGGCACCTCAAAATCAAAGT  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  CAGAGAGAGCAGGAGGAGAAGCAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTCAGGCACCTCAAAATCAAAGT  227

Query  657  GGAAGAGTTGGAAAATGAAAGGAATCAGTATGAATGGAAGCTAAAGGCCACTAAGGCTGAAGTCGCCCAGCTGC  730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  GGAAGAGTTGGAAAATGAAAGGAATCAGTATGAATGGAAGCTAAAGGCCACTAAGGCTGAAGTCGCCCAGCTGC  301

Query  731  AAGAACAGGTGGCCCTGAAAGATGCAGAAATTGAGCGTCTGCACAGCCAGCTCTCCCGGACAGCAGCTCTCCAC  804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  AAGAACAGGTGGCCCTGAAAGATGCAGAAATTGAGCGTCTGCACAGCCAGCTCTCCCGGACAGCAGCTCTCCAC  375

Query  805  AGTGAGAGTCACACAGAGAGAGACCAAGAAATTCAACGTCTGAAAATGGGGATGGAAACTTTGCTGCTTGCCAA  878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  AGTGAGAGTCACACAGAGAGAGACCAAGAAATTCAACGTCTGAAAATGGGGATGGAAACTTTGCTGCTTGCCAA  449

Query  879  TGAAGATAAGGACCGTCGGATAGAGGAGCTTACGGGGCTGTTAAACCAGTACCGGAAGGTAAAGGAGATTGTGA  952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  450  TGAAGATAAGGACCGTCGGATAGAGGAGCTTACGGGGCTGTTAAACCAGTACCGGAAGGTAAAGGAGATTGTGA  523

Query  953  TGGTCACTCAAGGGCCTTCGGAGAGAACTCTCTCAATCAATGAAGAAGAACCGGAGGGAGGTTTCAGCAAGTGG  1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  524  TGGTCACTCAAGGGCCTTCGGAGAGAACTCTCTCAATCAATGAAGAAGAACCGGAGGGAGGTTTCAGCAAGTGG  597

Query 1027  AACGCTACAAATAAGGACCCTGAAGAATTATTTAAACAAGAGATGCCTCCAAGATGTAGCTCTCCTACAGTGGG  1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  598  AACGCTACAAATAAGGACCCTGAAGAATTATTTAAACAAGAGATGCCTCCAAGATGTAGCTCTCCTACAGTGGG  671

Query 1101  GCCACCTCCATTGCCACAGAAATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCTTGTAGTCTAGAAGACTTGA  1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  672  GCCACCTCCATTGCCACAGAAATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCTTGTAGTCTAGAAGACTTGA  745

Query 1175  GAAGTGAATCTGTGGATAAGTGTATGGATGGGAACCAGCCCTTCCCGGTGTTAGAACCCAAGGACAGCCCTTTC  1248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  746  GAAGTGAATCTGTGGATAAGTGTATGGATGGGAACCAGCCCTTCCCGGTGTTAGAACCCAAGGACAGCCCTTTC  819

Query 1249  TTGGCGGAGCACAAATATCCCACTTTACCTGGGAAGCTTTCAGGAGCCACGCCCAATGGAGAGGCTGCCAAATC  1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  820  TTGGCGGAGCACAAATATCCCACTTTACCTGGGAAGCTTTCAGGAGCCACGCCCAATGGAGAGGCTGCCAAATC  893

Query 1323  TCCTCCCACCATCTGCCAGCCTGACGCCACGGGGAGCAGCCTGCTGAGGCTGAGAGACACAGAAAGTGGCTGGG  1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  894  TCCTCCCACCATCTGCCAGCCTGACGCCACGGGGAGCAGCCTGCTGAGGCTGAGAGACACAGAAAGTGGCTGGG  967

Query 1397  ATGACACTGCTGTGGTCAATGACCTCTCATCCACATCATCGGGCACTGAATCAGGTCCTCAGTCTCCTCTGACA  1470
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  968  ACGACACTGCTGTGGTCAATGACCTCTCATCCACATCATCGGGCACTGAATCAGGTCCTCAGTCTCCTCTGACA  1041

Query 1471  CCAGATGGTAAACGGAATCCCAAAGGCATTAAGAAGTTCTGGGGAAAAATCCGAAGAACTCAGTCAGGAAATTT  1544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042  CCAGATGGTAAACGGAATCCCAAAGGCATTAAGAAGTTCTGGGGAAAAATCCGAAGAACTCAGTCAGGAAATTT  1115

Query 1545  CTACACTGACACGCTGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAGACTCTCTA  1618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116  CTACACTGACACGCTGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGGGCAACCGCAGGGCCAAGACTCTCTA  1189

Query 1619  GGACCAGGGACTCCAAGGGACAGAAAAGTGACGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAGCGTGTGTGT  1692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190  GGACCAGGGACTCCAAGGGACAGAAAAGTGACGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAGCGTGTGTGT  1263

Query 1693  GCATGGCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCAGGCAGTGGGTATCTTCTGGCCACACCTT  1766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264  GCATGGCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTGCCAGGCAGTGGGTATCTTCTGGCCACACCTT  1337

Query 1767  ATTGACAGCCACCCCTCAGGACATGGAAAAGGAGCTAGGAATTAAGCACCCACTCCACAGGAAGAAGCTTGTTT  1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338  ATTGACAGCCACCCCTCAGGACATGGAAAAGGAGCTAGGAATTAAGCACCCACTCCACAGGAAGAAGCTTGTTT  1411

Query 1841  TAGCAGTGAAAGCCATCAACACCAAACAGGAGGAGAAGTCTGCACTGCTAGACCACATTTGGGTGACAAGGTGG  1914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412  TAGCAGTGAAAGCCATCAACACCAAACAGGAGGAGAAGTCTGCACTGCTAGACCACATTTGGGTGACAAGGTGG  1485

Query 1915  CTTGATGATATTGGCTTACCCCAGTACAAAGACCAGTTTCATGAATCTAGAGTTGACGGACGAATGCTGCAATA  1988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486  CTTGATGATATTGGCTTACCCCAGTACAAAGACCAGTTTCATGAATCTAGAGTTGACGGACGAATGCTGCAATA  1559

Query 1989  CCTAACTGTGAACGATTTACTCTTCTTAAAAGTCACCAGCCAACTACATCATCTCAGCATCAAATGTGCCATTC  2062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560  CCTAACTGTGAACGATTTACTCTTCTTAAAAGTCACCAGCCAACTACATCATCTCAGCATCAAATGTGCCATTC  1633

Query 2063  ACGTGCTGCATGTCAACAAGTTCAACCCCCACTGCCTGCACCGGCGGCCAGCTGATGAGAGTAACCTTTCTCCT  2136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634  ACGTGCTGCATGTCAACAAGTTCAACCCCCACTGCCTGCACCGGCGGCCAGCTGATGAGAGTAACCTTTCTCCT  1707

Query 2137  TCAGAAGTTGTACAGTGGTCCAACCACAGGGTGATGGAGTGGTTACGATCTGTGGACCTGGCAGAGTATGCACC  2210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708  TCAGAAGTTGTACAGTGGTCCAACCACAGGGTGATGGAGTGGTTACGATCTGTGGACCTGGCAGAGTATGCACC  1781

Query 2211  CAATCTTCGAGGGAGTGGAGTCCATGGAGGCCTCATTATCCTGGAGCCACGCTTCACTGGGGACACCCTGGCTA  2284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782  CAATCTTCGAGGGAGTGGAGTCCATGGAGGCCTCATTATCCTGGAGCCACGCTTCACTGGGGACACCCTGGCTA  1855

Query 2285  TGCTTCTCAACATCCCCCCACAAAAGACGCTCCTCAGGCGCCACCTGACCACCAAGTTCAATGCCTTGATTGGT  2358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856  TGCTTCTCAACATCCCCCCACAAAAGACGCTCCTCAGGCGCCACCTGACCACCAAGTTCAATGCCTTGATTGGT  1929

Query 2359  CCGGAGGCTGAACAGGAAAAGCGAGAGAAAATGGCCTCACCAGCTTACACACCACTGACCACCACAGCCAAAGT  2432
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930  CCGGAGGCTGAACAGGAGAAGCGAGAGAAAATGGCCTCACCAGCTTACACACCACTGACCACCACAGCCAAAGT  2003

Query 2433  CCGGCCAAGGAAACTAGGATTTTCACACTTCGGAAACATAAGAAAAAAGAAGTTCGATGAATCGACGGACTACA  2506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004  CCGGCCAAGGAAACTAGGATTTTCACACTTCGGAAACATAAGAAAAAAGAAGTTCGATGAATCGACGGACTACA  2077

Query 2507  TTTGCCCAATGGAGCCCAGTGACGGTGTCAGTGATAGTCACAGGGTCTACAGTGGCTACCGGGGCCTCAGCCCC  2580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078  TTTGCCCAATGGAGCCCAGTGACGGTGTCAGTGATAGTCACAGGGTCTACAGTGGCTACCGGGGCCTCAGCCCC  2151

Query 2581  CTTGATGCCCCTGAACTGGATGGGCTGGACCAGGTGGGACAGATCAGC  2628
            ||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 2152  CTTGATGCCCCTGAACTGGATGGGCTGGACCAGGTGGGACAGATTAGC  2199

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