Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07245
Subject:
XM_006507445.3
Aligned Length:
2669
Identities:
2079
Gaps:
295

Alignment

Query    1  ATGGCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCAAATGGACGGGATCATTGCAGGCACTAAAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGGTGCAGATCTTAGTGATGGTACTTGTGAGCCTGGACTGGCTTCCCCGGCCTCCTACATGAACCCCTTCCCGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGCTCCATCTCATCGAGGACTTGA-GGCTGGCCTTGGAGATGCTGGAGCTTCCTCAGGAGAGAGCAGCCCTCCT  221
                                   | ||.|||    |||.||  ||..|.||.|        .||||...|||.|
Sbjct    1  -----------------------ATGGATGG----GGACAT--TGATGTTTAC--------AAGCATTTCTCGT  37

Query  222  GAGCCAGATCCCTGGCCCAACAGCTGCCTACATAAAGGAATGGTTTGAAGAGAGCTTGTCCCAGGTAAACCACC  295
            | ||                                         |||||||     ||||||||||||.||||
Sbjct   38  G-GC-----------------------------------------TGAAGAG-----GTCCCAGGTAAATCACC  64

Query  296  ACAGTGCTGCTAGTAATGAAACCTACCAGGAACGCTTGGCACGTCTAGAAGGGGATAAGGAGTCCCTCATATTG  369
            ||.||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||||||.|.
Sbjct   65  ACGGTGCTGCTAGTAATGAAACCTACCAGGAACGCCTGGCACGGCTAGAAGGAGATAAAGAGTCCCTCATACTA  138

Query  370  CAGGTGAGTGTCATCACAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGAGACCTGGAAGTGTGTCTGGAAGG  443
            ||||||||.|||.|||||||.|||||.||||||||.|||||.||||||||.|||||.|||||||||||||||||
Sbjct  139  CAGGTGAGCGTCCTCACAGATCAAGTGGAAGCCCAAGGAGAGAAGATTCGGGACCTTGAAGTGTGTCTGGAAGG  212

Query  444  ACACCAGGTGAAACTCAATGCTGCTGAAGAGATGCTTCAACAGGAGCTGCTAAGCCGCACATCTCTTGAGACCC  517
            .|||||||||||.|||||||||||.||||||||||||||.||||||||||||||.|||||||||||.|||||||
Sbjct  213  CCACCAGGTGAAGCTCAATGCTGCAGAAGAGATGCTTCAGCAGGAGCTGCTAAGTCGCACATCTCTGGAGACCC  286

Query  518  AGAAGCTCGATCTGATGACTGAAGTGTCTGAGCTGAAGCTCAAGCTGGTTGGCATGGAGAAGGAGCAGAGAGAG  591
            |||||.|.||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||.||||.|||.
Sbjct  287  AGAAGTTGGATCTGATGACTGAGGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGGAAAAAGAACAGAAAGAA  360

Query  592  CAGGAGGAGAAGCAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTCAGGCACCTCAAAATCAAAGTGGAAGAGTT  665
            ||.||.||.||.||||||||||||||||||||||||||||||||.|.|||||||||||||||.|||||.|||.|
Sbjct  361  CAAGAAGAAAAACAGAGAAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCT  434

Query  666  GGAAAATGAAAGGAATCAGTATGAATGGAAGCTAAAGGCCACTAAGGCTGAAGTCGCCCAGCTGCAAGAACAGG  739
            |||.||.||..||||.||||||||.|||.||||.||||||||.||||||||.||.|||||||||||||||||||
Sbjct  435  GGAGAACGAGCGGAACCAGTATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCCAGCTGCAAGAACAGG  508

Query  740  TGGCCCTGAAAGATGCAGAAATTGAGCGTCTGCACAGCCAGCTCTCCCGGACAGCAGCTCTCCACAGTGAGAGT  813
            |||||||.|||||||||||||||||||||||.|||||||||||||||||||..||||||||||||||.||   .
Sbjct  509  TGGCCCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGA---C  579

Query  814  CACACAGAGAGAGACCAAGAAATTCAACGTCTGAAAATGGGGATGGAAACTTTGCTGCTTGCCAATGAAGATAA  887
            ||..|||||.||||.||||||||.||.|||||||||||||||||||||||..|||||.||||||||||.|||||
Sbjct  580  CATGCAGAGCGAGATCAAGAAATCCACCGTCTGAAAATGGGGATGGAAACACTGCTGGTTGCCAATGAGGATAA  653

Query  888  GGACCGTCGGATAGAGGAGCTTACGGGGCTGTTAAACCAGTACCGGAAGGTAAAGGAGATTGTGATGGTCACTC  961
            |||||||||||||||||||||.||.||||||||.|||.||||||..|.||||||||||||||||||||..||||
Sbjct  654  GGACCGTCGGATAGAGGAGCTGACAGGGCTGTTGAACAAGTACCTAAGGGTAAAGGAGATTGTGATGGCAACTC  727

Query  962  AAGGGCCTTCGGAGAGAACTCTCTCAATCAATGAAGAAGAACCGGAGGGAGGTTTCAGCAAGTGGAACGCTACA  1035
            |.||||||||.||.|||||.|||||.|||||||||||.|||...||||||.|.|||.|.||.|||||..|.|||
Sbjct  728  AGGGGCCTTCAGAAAGAACCCTCTCCATCAATGAAGATGAAATAGAGGGAAGCTTCCGAAAATGGAATACCACA  801

Query 1036  AATAAGGACCCTGAAGAATTATTTAAACAAGAGATGCCTCCAAGATGTAGCTCTCCTACAGTGGGGCCACCTCC  1109
            |||||...|||.||.|||.|....||.||||||||..|.|||.||||.||||||||.||....||.||||||||
Sbjct  802  AATAAAAGCCCAGAGGAAGTCCCGAAGCAAGAGATATCACCACGATGCAGCTCTCCCACCCCAGGACCACCTCC  875

Query 1110  ATTGCCACAGAAATCACTGGAAACCAGGGCTCAGAAAAAGCTCTCTTGTAGTCTAGAAGACTTGAGAAGTGAAT  1183
            .||||||||||||||||||||.|.||||||||||||.||.|||||.||.||||||||||||||||||.||||||
Sbjct  876  TTTGCCACAGAAATCACTGGAGAGCAGGGCTCAGAAGAAACTCTCCTGCAGTCTAGAAGACTTGAGACGTGAAT  949

Query 1184  CTGTGGATAAGTGTATGGATGGGAACCAGCCCTTCCCGGTGTTAGAACCCAAGGACAGCCCTTTCTTGGCGGAG  1257
            |||.||||||||||.|.|||||||||||||..|.|||.|||..|||.||||||||||||.|||||.|.||||||
Sbjct  950  CTGGGGATAAGTGTGTCGATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAG  1023

Query 1258  CACAAATATCCCACTTTACCTGGGAAGCTTTCAGGAGCCACGCCCAATGGAGAGGCTGCCAAATCTCCTCCCAC  1331
            ||.|||||.|||||.||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||| 
Sbjct 1024  CAGAAATACCCCACATTACCTGGGAAGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCAAATCTCCTCCCA-  1096

Query 1332  CATCTG-------CCAGCCTGACGCCACGGGGAGCAGCCTGCTGAGGCTGA-----------------------  1375
               |||       ||||||||||.|..|.||||||||||.||..|.|||||                       
Sbjct 1097  ---CTGCCTCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGAATCGCGGCTGGAGTGTCAGTGCT  1167

Query 1376  ----------GAGACACAGAAAGTGGCTGGGATGACACTGCTGTGGTCAATGACCTCTCATCCACATCATCGGG  1439
                      |||||||||||.|.||||||||.||.|..|               |||||||..|.||.||.||
Sbjct 1168  CCCGTATTAGGAGACACAGAAGGAGGCTGGGAAGATATAG---------------TCTCATCTGCTTCGTCTGG  1226

Query 1440  CACTGAATCAGGTCCTCAGTCTCCTCTGACACCAGATGGTAAACGGAATCCCAAAGGCATTAAGAAGTTCTGGG  1513
            .|||||.|||.|.|||||||||||..|||||||||||||.|||||||..|||||||||||||||||||||||||
Sbjct 1227  GACTGAGTCAAGCCCTCAGTCTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAGGCATTAAGAAGTTCTGGG  1300

Query 1514  GAAAAATCCGAAGAACTCAGTCAGGAAATTTCTACACTGACACGCTGGGGATGGCAGAGTTTCGACGAGGTGGG  1587
            ||||.|||||||||||||||||.|||||.|||.|.|||||..|.|.||||||||||||||||||||||||||||
Sbjct 1301  GAAAGATCCGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGG  1374

Query 1588  CTCCGGGCAACCGCAGGGCCAAGACTCTCTAGGACCAGGGACTCCAAGGGACAGAAAAGTGACGCCAATGCCCC  1661
            |||||.|||||.||.||.|||||.||.|||||||||||||||.||||||||||||||.||||.|||||||||||
Sbjct 1375  CTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGACCAGGGACACCAAGGGACAGAAATGTGATGCCAATGCCCC  1448

Query 1662  CTTTGCCCAGTGGAGCACAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCTCAGTATGTGATCTTTG  1735
            |||||||||||||||||||||.||.||.|||.|||||.|||||||.||.|||||||.|||||||||||||||||
Sbjct 1449  CTTTGCCCAGTGGAGCACAGAACGCGTATGTACATGGATGGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTG  1522

Query 1736  CCAGGCAGTGGGTATCTTCTGGCCACACCTTATTGACAGCCACCCCTCAGGACATGGAAAAGGAGCTAGGAATT  1809
            ||||.||||||||..|.|||||.||.||..||.|||||||.|||||||||||||||||||||||||||||.|||
Sbjct 1523  CCAGACAGTGGGTGACATCTGGACATACACTACTGACAGCTACCCCTCAGGACATGGAAAAGGAGCTAGGGATT  1596

Query 1810  AAGCACCCACTCCACAGGAAGAAGCTTGTTTTAGCAGTGAAAGCCATCAACACCAAACAGGAGGAGAAGTCTGC  1883
            ||.|||||.|||||||||||||||||.|||||||||||||||||.||||||.||||.||.||.||.|.||||||
Sbjct 1597  AAACACCCCCTCCACAGGAAGAAGCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGC  1670

Query 1884  ACTGCTAGACCACATTTGGGTGACAAGGTGGCTTGATGATATTGGCTTACCCCAGTACAAAGACCAGTTTCATG  1957
            .|||||.||||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1671  GCTGCTGGACCACATTTGGGTGACACGGTGGCTTGATGATATTGGCTTACCCCAATACAAAGACCAGTTTCATG  1744

Query 1958  AATCTAGAGTTGACGGACGAATGCTGCAATACCTAACTGTGAACGATTTACTCTTCTTAAAAGTCACCAGCCAA  2031
            ||||.||||||||.||.||||||||||||||||||||||||||.|||.||||||||||||||||||||||||||
Sbjct 1745  AATCAAGAGTTGATGGGCGAATGCTGCAATACCTAACTGTGAATGATCTACTCTTCTTAAAAGTCACCAGCCAA  1818

Query 2032  CTACATCATCTCAGCATCAAATGTGCCATTCACGTGCTGCATGTCAACAAGTTCAACCCCCACTGCCTGCACCG  2105
            ||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||.|||||||||||.|
Sbjct 1819  CTACATCATCTCAGCATCAAATGTGCTATTCACGTGCTACATGTCAACAAGTTCAACCCCAACTGCCTGCACAG  1892

Query 2106  GCGGCCAGCTGATGAGAGTAACCTTTCTCCTTCAGAAGTTGTACAGTGGTCCAACCACAGGGTGATGGAGTGGT  2179
            |.||||.||||||||||||||||||||.|||||.||||||||.||||||||||||||||||||.|||||||||.
Sbjct 1893  GAGGCCTGCTGATGAGAGTAACCTTTCCCCTTCCGAAGTTGTGCAGTGGTCCAACCACAGGGTAATGGAGTGGC  1966

Query 2180  TACGATCTGTGGACCTGGCAGAGTATGCACCCAATCTTCGAGGGAGTGGAGTCCATGGAGGCCTCATTATCCTG  2253
            |.|||||.||||||||||||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||
Sbjct 1967  TGCGATCCGTGGACCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTATCCTG  2040

Query 2254  GAGCCACGCTTCACTGGGGACACCCTGGCTATGCTTCTCAACATCCCCCCACAAAAGACGCTCCTCAGGCGCCA  2327
            |||||.|||||.||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||
Sbjct 2041  GAGCCTCGCTTTACTGGGGACACCCTGGCTATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTCAGGCGCCA  2114

Query 2328  CCTGACCACCAAGTTCAATGCCTTGATTGGTCCGGAGGCTGAACAGGAAAAGCGAGAGAAAATGGCCTCACCAG  2401
            .|||||||||||||||||.|||.||||||||||.|||||||||||||||||||||||.||||||||||||||.|
Sbjct 2115  TCTGACCACCAAGTTCAACGCCCTGATTGGTCCTGAGGCTGAACAGGAAAAGCGAGACAAAATGGCCTCACCCG  2188

Query 2402  CTTACACACCACTGACCACCACAGCCAAAGTCCGGCCAAGGAAACTAGGATTTTCACACTTCGGAAACATAAGA  2475
            |.||||||||.|||||||||||.||||||||.|||||.||||||||.|||||||||||.||.||||||||.|||
Sbjct 2189  CCTACACACCTCTGACCACCACCGCCAAAGTTCGGCCTAGGAAACTTGGATTTTCACATTTTGGAAACATGAGA  2262

Query 2476  AAAAAGAAGTTCGATGAATCGACGGACTACATTTGCCCAATGGAGCCCAGTGACGGTGTCAGTGATAGTCACAG  2549
            |||||||||||.||||||||.||.||.|||||||||||.||||||||..|.||.|.|||||||||.||.|||||
Sbjct 2263  AAAAAGAAGTTTGATGAATCTACAGATTACATTTGCCCCATGGAGCCTGGAGATGCTGTCAGTGACAGCCACAG  2336

Query 2550  GGTCTACAGTGGCTACCGGGGCCTCAGCCCCCTTGATGCCCCTGAACTGGATGGGCTGGACCAGGTGGGACAGA  2623
            |||||||.|.|.|||||||||||||||.||||||||...||.||||||.|||||..||||||||||||||||||
Sbjct 2337  GGTCTACGGAGTCTACCGGGGCCTCAGTCCCCTTGACAACCATGAACTAGATGGTTTGGACCAGGTGGGACAGA  2410

Query 2624  TCAGC  2628
            |.|||
Sbjct 2411  TAAGC  2415

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.