Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07304
- Subject:
- NR_027140.2
- Aligned Length:
- 3998
- Identities:
- 1126
- Gaps:
- 2871
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCTGGACACATAAATCAGCACGCGGCCGGAGAACCCCGCAATCTCTGCGCCCACAAAATACACCGACGATGC 74
Query 1 ---------------------------------------------------------------ATGGAACAACG 11
|||||||||||
Sbjct 75 CCGATCTACTTTAAGGGCTGAAACCCACGGGCCTGAGAGACTATAAGAGCGTTCCCTACCGCCATGGAACAACG 148
Query 12 GGGACAGAACGCCCCGGCCGCTTCGGGGGCCCGGAAAAGGCACGGCCCAGGACCCAGGGAGGCGCGGGGAGCCA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGGACAGAACGCCCCGGCCGCTTCGGGGGCCCGGAAAAGGCACGGCCCAGGACCCAGGGAGGCGCGGGGAGCCA 222
Query 86 GGCCTGGGCTCCGGGTCCCCAAGACCCTTGTGCTCGTTGTCGCCGCGGTCCTGCTGTTGGTCTCAGCTGAGTCT 159
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGCCTGGGCCCCGGGTCCCCAAGACCCTTGTGCTCGTTGTCGCCGCGGTCCTGCTGT----------------- 279
Query 160 GCTCTGATCACCCAACAAGACCTAGCTCCCCAGCAGAGAGCGGCCCCACAACAAAAGAGGTCCAGCCCCTCAGA 233
Sbjct 280 -------------------------------------------------------------------------- 279
Query 234 GGGATTGTGTCCACCTGGACACCATATCTCAGAAGACGGTAGAGATTGCATCTCCTGCAAATATGGACAGGACT 307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ---------------TGGACACCATATCTCAGAAGACGGTAGAGATTGCATCTCCTGCAAATATGGACAGGACT 338
Query 308 ATAGCACTCACTGGAATGACCTCCTTTTCTGCTTGCGCTGCACCAGGTGTGATTCAGGTGAAGTGGAGCTAAGT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 ATAGCACTCACTGGAATGACCTCCTTTTCTGCTTGCGCTGCACCAGGTGTGATTCAGGTGAAGTGGAGCTAAGT 412
Query 382 CCCTGCACCACGACCAGAAACACAGTGTGTCAGTGCGAAGAAGGCACCTTCCGGGAAGAAGATTCTCCTGAGAT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CCCTGCACCACGACCAGAAACACAGTGTGTCAGTGCGAAGAAGGCACCTTCCGGGAAGAAGATTCTCCTGAGAT 486
Query 456 GTGCCGGAAGTGCCGCACAGGGTGTCCCAGAGGGATGGTCAAGGTCGGTGATTGTACACCCTGGAGTGACATCG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTGCCGGAAGTGCCGCACAGGGTGTCCCAGAGGGATGGTCAAGGTCGGTGATTGTACACCCTGGAGTGACATCG 560
Query 530 AATGTGTCCACAAAGAATCAGGTACAAAGCACAGTGGGGAAGCCCCAGCTGTGGAGGAGACGGTGACCTCCAGC 603
|||||||||||||||||
Sbjct 561 AATGTGTCCACAAAGAA--------------------------------------------------------- 577
Query 604 CCAGGGACTCCTGCCTCTCCCTGTTCTCTCTCAGGCATCATCATAGGAGTCACAGTTGCAGCCGTAGTCTTGAT 677
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 ------------------------------TCAGGCATCATCATAGGAGTCACAGTTGCAGCCGTAGTCTTGAT 621
Query 678 TGTGGCTGTGTTTGTTTGCAAGTCTTTACTGTGGAAGAAAGTCCTTCCTTACCTGAAAGGCATCTGCTCAGGTG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TGTGGCTGTGTTTGTTTGCAAGTCTTTACTGTGGAAGAAAGTCCTTCCTTACCTGAAAGGCATCTGCTCAGGTG 695
Query 752 GTGGTGGGGACCCTGAGCGTGTGGACAGAAGCTCACAACGACCTGGGGCTGAGGACAATGTCCTCAATGAGATC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GTGGTGGGGACCCTGAGCGTGTGGACAGAAGCTCACAACGACCTGGGGCTGAGGACAATGTCCTCAATGAGATC 769
Query 826 GTGAGTATCTTGCAGCCCACCCAGGTCCCTGAGCAGGAAATGGAAGTCCAGGAGCCAGCAGAGCCAACAGGTGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GTGAGTATCTTGCAGCCCACCCAGGTCCCTGAGCAGGAAATGGAAGTCCAGGAGCCAGCAGAGCCAACAGGTGT 843
Query 900 CAACATGTTGTCCCCCGGGGAGTCAGAGCATCTGCTGGAACCGGCAGAAGCTGAAAGGTCTCAGAGGAGGAGGC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CAACATGTTGTCCCCCGGGGAGTCAGAGCATCTGCTGGAACCGGCAGAAGCTGAAAGGTCTCAGAGGAGGAGGC 917
Query 974 TGCTGGTTCCAGCAAATGAAGGTGATCCCACTGAGACTCTGAGACAGTGCTTCGATGACTTTGCAGACTTGGTG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TGCTGGTTCCAGCAAATGAAGGTGATCCCACTGAGACTCTGAGACAGTGCTTCGATGACTTTGCAGACTTGGTG 991
Query 1048 CCCTTTGACTCCTGGGAGCCGCTCATGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGA 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CCCTTTGACTCCTGGGAGCCGCTCATGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGA 1065
Query 1122 GGCAGCGGGCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGCAGCGGGCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTG 1139
Query 1196 TCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTG 1213
Query 1270 AGCTCTGGAAAGTTCATGTATCTAGAAGGTAATGCAGACTCTGCCATGTCC----------------------- 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 AGCTCTGGAAAGTTCATGTATCTAGAAGGTAATGCAGACTCTGCCATGTCCTAAGTGTGATTCTCTTCAGGAAG 1287
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1288 TCAGACCTTCCCTGGTTTACCTTTTTTCTGGAAAAAGCCCAACTGGACTCCAGTCAGTAGGAAAGTGCCACAAT 1361
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1362 TGTCACATGACCGGTACTGGAAGAAACTCTCCCATCCAACATCACCCAGTGGATGGAACATCCTGTAACTTTTC 1435
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1436 ACTGCACTTGGCATTATTTTTATAAGCTGAATGTGATAATAAGGACACTATGGAAATGTCTGGATCATTCCGTT 1509
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1510 TGTGCGTACTTTGAGATTTGGTTTGGGATGTCATTGTTTTCACAGCACTTTTTTATCCTAATGTAAATGCTTTA 1583
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1584 TTTATTTATTTGGGCTACATTGTAAGATCCATCTACACAGTCGTTGTCCGACTTCACTTGATACTATATGATAT 1657
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1658 GAACCTTTTTTGGGTGGGGGGTGCGGGGCAGTTCACTCTGTCTCCCAGGCTGGAGTGCAATGGTGCAATCTTGG 1731
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1732 CTCACTATAGCCTTGACCTCTCAGGCTCAAGCGATTCTCCCACCTCAGCCATCCAAATAGCTGGGACCACAGGT 1805
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1806 GTGCACCACCACGCCCGGCTAATTTTTTGTATTTTGTCTAGATATAGGGGCTCTCTATGTTGCTCAGGGTGGTC 1879
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1880 TCGAATTCCTGGACTCAAGCAGTCTGCCCACCTCAGACTCCCAAAGCGGTGGAATTAGAGGCGTGAGCCCCCAT 1953
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 1954 GCTTGGCCTTACCTTTCTACTTTTATAATTCTGTATGTTATTATTTTATGAACATGAAGAAACTTTAGTAAATG 2027
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2028 TACTTGTTTACATAGTTATGTGAATAGATTAGATAAACATAAAAGGAGGAGACATACAATGGGGGAAGAAGAAG 2101
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2102 AAGTCCCCTGTAAGATGTCACTGTCTGGGTTCCAGCCCTCCCTCAGATGTACTTTGGCTTCAATGATTGGCAAC 2175
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2176 TTCTACAGGGGCCAGTCTTTTGAACTGGACAACCTTACAAGTATATGAGTATTATTTATAGGTAGTTGTTTACA 2249
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2250 TATGAGTCGGGACCAAAGAGAACTGGATCCACGTGAAGTCCTGTGTGTGGCTGGTCCCTACCTGGGCAGTCTCA 2323
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2324 TTTGCACCCATAGCCCCCATCTATGGACAGGCTGGGACAGAGGCAGATGGGTTAGATCACACATAACAATAGGG 2397
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2398 TCTATGTCATATCCCAAGTGAACTTGAGCCCTGTTTGGGCTCAGGAGATAGAAGACAAAATCTGTCTCCCACGT 2471
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2472 CTGCCATGGCATCAAGGGGGAAGAGTAGATGGTGCTTGAGAATGGTGTGAAATGGTTGCCATCTCAGGAGTAGA 2545
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2546 TGGCCCGGCTCACTTCTGGTTATCTGTCACCCTGAGCCCATGAGCTGCCTTTTAGGGTACAGATTGCCTACTTG 2619
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2620 AGGACCTTGGCCGCTCTGTAAGCATCTGACTCATCTCAGAAATGTCAATTCTTAAACACTGTGGCAACAGGACC 2693
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2694 TAGAATGGCTGACGCATTAAGGTTTTCTTCTTGTGTCCTGTTCTATTATTGTTTTAAGACCTCAGTAACCATTT 2767
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2768 CAGCCTCTTTCCAGCAAACCCTTCTCCATAGTATTTCAGTCATGGAAGGATCATTTATGCAGGTAGTCATTCCA 2841
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2842 GGAGTTTTTGGTCTTTTCTGTCTCAAGGCATTGTGTGTTTTGTTCCGGGACTGGTTTGGGTGGGACAAAGTTAG 2915
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2916 AATTGCCTGAAGATCACACATTCAGACTGTTGTGTCTGTGGAGTTTTAGGAGTGGGGGGTGACCTTTCTGGTCT 2989
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 2990 TTGCACTTCCATCCTCTCCCACTTCCATCTGGCATCCCACGCGTTGTCCCCTGCACTTCTGGAAGGCACAGGGT 3063
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3064 GCTGCTGCCTCCTGGTCTTTGCCTTTGCTGGGCCTTCTGTGCAGGACGCTCAGCCTCAGGGCTCAGAAGGTGCC 3137
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3138 AGTCCGGTCCCAGGTCCCTTGTCCCTTCCACAGAGGCCTTCCTAGAAGATGCATCTAGAGTGTCAGCCTTATCA 3211
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3212 GTGTTTAAGATTTTTCTTTTATTTTTAATTTTTTTGAGACAGAATCTCACTCTCTCGCCCAGGCTGGAGTGCAA 3285
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3286 CGGTACGATCTTGGCTCAGTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCGTGCCTCAGCCTCCGGAGTAG 3359
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3360 CTGGGATTGCAGGCACCCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTT 3433
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3434 GGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTTGGCCTCCGAAAGTGCTGGGATTACAGGCGTG 3507
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3508 AGCCACCAGCCAGGCCAAGCTATTCTTTTAAAGTAAGCTTCCTGACGACATGAAATAATTGGGGGTTTTGTTGT 3581
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3582 TTAGTTACATTAGGCTTTGCTATATCCCCAGGCCAAATAGCATGTGACACAGGACAGCCATAGTATAGTGTGTC 3655
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3656 ACTCGTGGTTGGTGTCCTTTCATGCTTCTGCCCTGTCAAAGGTCCCTATTTGAAATGTGTTATAATACAAACAA 3729
Query 1321 -------------------------------------------------------------------------- 1320
Sbjct 3730 GGAAGCACATTGTGTACAAAATACTTATGTATTTATGAATCCATGACCAAATTAAATATGAAACCTTATATAAA 3803
Query 1321 -- 1320
Sbjct 3804 AA 3805
