Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07321
Subject:
NM_011018.3
Aligned Length:
1327
Identities:
923
Gaps:
260

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGTCGTTCACGGTGAAGGCCTATCTTCTGGGCAAGGAGGAGGCGACCCGCGAGATCCGCCGCTTCAGCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGCTTCAGCCCGGAGCCGGAGGCGGAAGCCCAAGCCGCGGCCGGCCCGGGGCCCTGCGAGAGGCTGCTGAGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGTGGCTGTGCTGTTCCCCACGCTGAGGCCTGGCGGCTTCCAGGCGCACTACCGCGATGAGGATGGGGACTTG  222

Query    1  ------------------------------ATGGCCATGTCCTACGTGAAGGATGACATCTTCCGAATCTACAT  44
                                          |||||.||||||||.|||||.||||||||||||||.||||||||
Sbjct  223  GTTGCCTTTTCCAGTGATGAGGAGCTGACAATGGCTATGTCCTATGTGAAAGATGACATCTTCCGCATCTACAT  296

Query   45  TAAAGAGAAAAAAGAGTGCCGGCGGGACCACCGCCCACCGTGTGCTCAGGAGGCGCCCCGCAACATGGTGCACC  118
            |||||||||.||.||||||||||||||.||.||||||||.||||||||||||||.|||||.|||||||||||||
Sbjct  297  TAAAGAGAAGAAGGAGTGCCGGCGGGAACATCGCCCACCATGTGCTCAGGAGGCACCCCGAAACATGGTGCACC  370

Query  119  CCAATGTGATCTGCGATGGCTGCAATGGGCCTGTGGTAGGAACCCGCTACAAGTGCAGCGTCTGCCCAGACTAC  192
            |||||||||||||.|||||.|||||.|||||||||||.|||||.|||||.||||||||.||.||||||||||||
Sbjct  371  CCAATGTGATCTGTGATGGTTGCAACGGGCCTGTGGTGGGAACTCGCTATAAGTGCAGTGTGTGCCCAGACTAC  444

Query  193  GACTTGTGTAGCGTCTGCGAGGGAAAGGGCTTGCACCGGGGGCACACCAAGCTCGCATTCCCCAGCCCCTTCGG  266
            |||.||||.|||||.||||||||.||||||.|||||.|||..||||.|||||||...||.||||.||||||.||
Sbjct  445  GACCTGTGCAGCGTGTGCGAGGGGAAGGGCCTGCACAGGGAACACAGCAAGCTCATCTTTCCCAACCCCTTTGG  518

Query  267  GCACCTGTCTGAGGGCTTCTCGCACAGCCGCTGGCTCCGGAAGGTGAAACACGGACACTTCGGGTGGCCAGGAT  340
            .|||||.|||||..|||||||.||.|||||||||||.||||||.|||||||.||||||||.||.|||||.||.|
Sbjct  519  CCACCTCTCTGATAGCTTCTCTCATAGCCGCTGGCTTCGGAAGCTGAAACATGGACACTTTGGCTGGCCTGGCT  592

Query  341  GGGAAATGGGTCCACCAGGAAACTGGAGCCCACGTCCTCCTCGTGCAGGGGAGGCCCGCCCTGGCCCCACGGCA  414
            ||||.|||||.|||||.||.||||||||||||||||||||||||||||||||.|.|||||||.||||.||.||.
Sbjct  593  GGGAGATGGGCCCACCGGGGAACTGGAGCCCACGTCCTCCTCGTGCAGGGGATGGCCGCCCTTGCCCTACAGCT  666

Query  415  GAATCAGCTTCTGGTCCATCGGAGGATCCGAGTGTGAATTTCCTGAAGAACGTTGGGGAGAGTGTGGCAGCTGC  488
            ||.||||||||||.||||.|.||.|||||.|.|||.||||||||||||||.||.||||||||||||||||||||
Sbjct  667  GAGTCAGCTTCTGCTCCACCAGAAGATCCCAATGTCAATTTCCTGAAGAATGTGGGGGAGAGTGTGGCAGCTGC  740

Query  489  CCTTAGCCCTCTGGGCATTGAAGTTGATATCGATGTGGAGCACGGAGGGAAAAGAAGCCGCCTGACCCCCGTCT  562
            |||.||||||||.||||||||.|||||.||.||||||||.||.||||||||.||||||||||||||.||| .||
Sbjct  741  CCTCAGCCCTCTAGGCATTGAGGTTGACATTGATGTGGAACATGGAGGGAAGAGAAGCCGCCTGACACCC-ACT  813

Query  563  -CTCCAGAGAGTTCCA------GCACAGAGGAGAAGAGCAGCTCACAGCCAAGCAGCTGCTGCTCTGATCCCAG  629
             |.|||||.|||||||      |||||||.||.|||||.|.|.|.||||||||||||||||..||.||...|||
Sbjct  814  ACCCCAGAAAGTTCCAGCACAGGCACAGAAGACAAGAGTAACACTCAGCCAAGCAGCTGCTCTTCGGAAGTCAG  887

Query  630  CAAGCCGGGTGGGAATGTTGAGGGCGCCACGCAGTCTCTGGCGGAGCAGATGAGAAAGATCGCCTTGGAGTCCG  703
            |||.||.|..|||..||..||||||.|..|.|||||||||.|.|||||.||||.||||||.|||||||||||.|
Sbjct  888  CAAACCTGACGGGGCTGGGGAGGGCCCTGCTCAGTCTCTGACAGAGCAAATGAAAAAGATAGCCTTGGAGTCGG  961

Query  704  AGGGGCGCCCTGAGGAACAGATGGAGTCGGATAACTGTTCAGGAGGAGATGATGACTGGACCCATCTGTCTTCA  777
            .|||.|..||.|||||||||||||||||||..|||||.|||||||||||.|||||||||||.|||.||||||||
Sbjct  962  TGGGACAGCCAGAGGAACAGATGGAGTCGGGAAACTGCTCAGGAGGAGACGATGACTGGACACATTTGTCTTCA  1035

Query  778  AAAGAAGTGGACCCGTCTACAGGTGAACTCCAGTCCCTACAGATGCCAGAATCCGAAGGGCCAAGCTCTCTGGA  851
            ||||||||||||||.||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||.||
Sbjct 1036  AAAGAAGTGGACCCATCTACAGGTGAACTCCAGTCTCTACAGATGCCAGAATCGGAAGGGCCAAGCTCTCTAGA  1109

Query  852  CCCCTCCCAGGAGGGACCCACAGGGCTGAAGGAAGCTGCCTTGTACCCACATCTCCCGCCAGAGGCTGACCCGC  925
            ||||||.|||||.|||||||||||||||||||||||||||.|.||||||||||||||.|||||||||||.||.|
Sbjct 1110  CCCCTCACAGGAAGGACCCACAGGGCTGAAGGAAGCTGCCCTATACCCACATCTCCCACCAGAGGCTGATCCCC  1183

Query  926  GGCTGATTGAGTCCCTCTCCCAGATGCTGTCCATGGGCTTCTCTGATGAAGGCGGCTGGCTCACCAGGCTCCTG  999
            |||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.
Sbjct 1184  GGCTGATTGAGTCCCTCTCCCAGATGCTGTCCATGGGTTTCTCGGATGAAGGCGGCTGGCTCACCAGGCTCCTA  1257

Query 1000  CAGACCAAGAACTATGACATCGGAGCGGCTCTGGACACCATCCAGTATTCAAAGCATCCCCCGCCGTTG  1068
            |||||||||||.||.||||||||.||.|||||||||||.|||||||||||.|||||.||.||.||.|||
Sbjct 1258  CAGACCAAGAATTACGACATCGGGGCTGCTCTGGACACGATCCAGTATTCGAAGCACCCTCCACCATTG  1326

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.