Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07469
Subject:
XM_006539312.3
Aligned Length:
3588
Identities:
2503
Gaps:
882

Alignment

Query    1  ATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCAGTGCTTTGGCAGGACTCTTTCAGCCCCCACCTGAAACATCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCCTCAAGAACCAGCTAATCCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAGCGCAGCCACAAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGCTGCAAATCAGGCTCTTGCAGCTGGGACTCACTCCAGCCCTGTCCCAGGATCTATAGGAGTTGCAGGCCGT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCCCAGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAGCAGCTTGGGGGAGGAGGAAGTGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGGAGGCGGCTATAATAATAGCAAACATCGATGGCCTACTGGGGATAACATTCATGCAGAACATCAGGTGCGTT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCATGGATGAACTGAATCATGATTTTCAAGCACTTGCTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGTAAAAAGTTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAATATTCCTGGGTGATCAATGGCG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGACAGTGCCTGGGGAACATCAGATCATTCAGTTTCCCAGCCAATCATGGTGCAGAGAAGACCTGGTCAGAGTT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TCCATGTGAACAGTGAGGTCAATTCTGTACTGTCCCCACGATCGGAGAGTGGGGGACTAGGCGTTAGCATGGTG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAGTATGTGTTGAGCTCATCCCCGGGCGATTCCTGTCTAAGAAAAGGAGGATTTGGCCCAAGGGATGCAGACAG  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TGATGAAAACGACAAAGGTGAAAAGAAGAACAAGGGTACGTTTGATGGAGATAAGCTAGGAGATTTGAAGGAGG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AGGGTGATGTGATGGACAAGACCAATGGTTTACCAG----TGC---AGAATGGGATTG--ATGCAGACGTCAAA  879
                                    |||.|||.|.||    |||   .||| ||||..|  |||  |.||     
Sbjct    1  ------------------------ATGATTTTCAAGCACTTGCTCTGGAA-GGGAGAGCTATG--GGCG-----  42

Query  880  GATTTTAGCCGTACCCCTGGTAATTGCCAGAACTCTGCTAATGAAGTGGATCTTCTGGGTCCAAACCAGAATGG  953
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   43  ------AGCCGTACCCCTGGTAATTGCCAGAACTCTGCTAATGAAGTGGATCTTCTGGGTCCAAACCAGAATGG  110

Query  954  TTCTGAGGGCTTAGCCCAGCTGACCAGCACCAATGGTGCCAAGCCTGTGGAGGATTTCTCCAACATGGAGTCCC  1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  TTCTGAGGGCTTAGCCCAGCTGACCAGCACCAATGGTGCCAAGCCTGTGGAGGATTTCTCCAACATGGAGTCCC  184

Query 1028  AGAGTGTCCCCTTGGACCCCATGGAACATGTGGGCATGGAGCCTCTTCAGTTTGATTATTCAGGCACGCAGGTA  1101
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  185  AGAGTGTCCCCTTGGACCCCATGGAACATGTGGGCATGGAGCCTCTGCAGTTTGATTATTCAGGCACGCAGGTA  258

Query 1102  CCTGTGGACTCAGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAACAGCTGTTCCAAAGACCTAA  1175
            |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||
Sbjct  259  CCTGTGGACTCTGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAACAGCTATTCCAAAGACCCAA  332

Query 1176  TGCGCTTGCTGTCCAGCAGTTGACAGCTGCTCAGCAGCAGCAGTATGCACTGGCAGCTGCTCATCAGCCGCACA  1249
            |||.||||||||.|||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||.||||
Sbjct  333  TGCACTTGCTGTTCAGCAGTTGACAGCTGCCCAGCAGCAGCAGTATGCACTTGCAGCAGCCCACCAGCCTCACA  406

Query 1250  TC---------------GGTTTAGCTCCCGCTGCGTTTGTCCCCAATCCATACATCATCAGCGCTGCTCCCCCA  1308
            ||               |||||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  407  TCGGTATGTTTCCAGCAGGTTTAGCTCCCGCTGCGTTTGTCCCCAACCCATACATCATCAGCGCTGCTCCCCCA  480

Query 1309  GGGACGGACCCCTACACAGCTGGATTGGCTGCAGCAGCGACACTAGGCCCAGCTGTGGTCCCTCACCAGTATTA  1382
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||
Sbjct  481  GGGACGGACCCCTACACAGCTGGATTGGCTGCAGCAGCGACACTCGGCCCAGCTGTGGTCCCTCACCAATATTA  554

Query 1383  TGGAGTTACTCCCTGGGGAGTCTACCCTGCCAGTCTTTTCCAGCAGCAAGCTGCCGCTGCCGCTGCAGCAACTA  1456
            ||||||.||.||.|||||.|||||||||||||||||.|||||||||||.||.||.||.||.||.|||||.||.|
Sbjct  555  TGGAGTCACGCCATGGGGTGTCTACCCTGCCAGTCTCTTCCAGCAGCAGGCAGCTGCAGCTGCAGCAGCTACAA  628

Query 1457  ATTCAGCTAATCAACAGACCACCCCACAGGCTCAGCAAGGACAGCAGCAGGTTCTCCGTGGAGGAGCCAGCCAA  1530
            |.||.||||.|||.||||.|.|.||.|||||.|||||.|||||||||||||||||.|||||||||||.||||||
Sbjct  629  ACTCTGCTACTCAGCAGAGCGCTCCGCAGGCCCAGCAGGGACAGCAGCAGGTTCTTCGTGGAGGAGCTAGCCAA  702

Query 1531  CGTCCTTTGACCCCAAACCAGAACCAGCAGGGACAGCAAACGGATCCCCTTGTGGCAGCTGCAGCAGTGAATTC  1604
            |||||||||||||||||.|||||||||||||||||.|||||.|||||||||||.||||||||||||||||||||
Sbjct  703  CGTCCTTTGACCCCAAATCAGAACCAGCAGGGACAACAAACAGATCCCCTTGTAGCAGCTGCAGCAGTGAATTC  776

Query 1605  TGCCCTTGCATTTGGACAAGGTCTGGCAGCAGGCATGCCAGGTTATCCGGTGTTGGCTCCTGCTGCTTACTATG  1678
            |||.|||||.|||||||||||..||||.|||||.||||||||||||||.||.|||||.||||||||||||||||
Sbjct  777  TGCTCTTGCCTTTGGACAAGGATTGGCTGCAGGTATGCCAGGTTATCCAGTCTTGGCACCTGCTGCTTACTATG  850

Query 1679  ACCAAACTGGTGCCCTTGTAGTGAATGCAGGCGCGAGAAATGGTCTTGGAGCTCCTGTTCGACTTGTAGCTCCT  1752
            |||||||||||||||||||.|||||||||||.||.||||||||.||.||||||||.||.||.|||||.|||||.
Sbjct  851  ACCAAACTGGTGCCCTTGTGGTGAATGCAGGGGCAAGAAATGGCCTCGGAGCTCCAGTCCGGCTTGTTGCTCCA  924

Query 1753  GCCCCAGTCATCATTAGTTCCTCAGCTGCACAAGCAGCTGTTGCAGCAGCCGCAGCTTCAGCAAATGGAGCAGC  1826
            |||||||||||||||||.|||||||||||||||||||||||||||||.||.|||||.||||||||.||||||||
Sbjct  925  GCCCCAGTCATCATTAGCTCCTCAGCTGCACAAGCAGCTGTTGCAGCGGCTGCAGCGTCAGCAAACGGAGCAGC  998

Query 1827  TGGTGGTCTTGCTGGAACAACAAATGGACCATTTCGCCCTTTAGGAACACAGCAGCCTCAGCCCCAGCCCCAGC  1900
            ||||||||||||.|||||.|||||||||||||||||.||||||||.||.||||||||.|||||||||||.||||
Sbjct  999  TGGTGGTCTTGCCGGAACTACAAATGGACCATTTCGACCTTTAGGCACCCAGCAGCCCCAGCCCCAGCCTCAGC  1072

Query 1901  AGCAGCCCAATAACAACCTGGCATCCAGTTCTTTCTACGGCAACAACTCTCTGAACAGCAATTCACAGAGCAGC  1974
            |||||||||.||||||.|||||.|||||.||||||||.||||||||||||||||.|||.||.||.|||||||||
Sbjct 1073  AGCAGCCCAGTAACAATCTGGCTTCCAGCTCTTTCTATGGCAACAACTCTCTGAGCAGTAACTCCCAGAGCAGC  1146

Query 1975  TCCCTCTTCTCCCAGGGCTCTGCCCAGCCTGCCAACACATCCTTGGGATTCGGAAGTAGCAGTTCTCTCGGCGC  2048
            |||||||||||.|||||||||||.||||||||||||||.|||||||||||||||||.||||||||.||.||.||
Sbjct 1147  TCCCTCTTCTCTCAGGGCTCTGCACAGCCTGCCAACACGTCCTTGGGATTCGGAAGCAGCAGTTCCCTTGGTGC  1220

Query 2049  CACCCTGGGATCCGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTG  2122
            ||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221  CACCCTGGGATCGGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTG  1294

Query 2123  ACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTAT  2196
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1295  ACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGGCCCCCATTGGACACAGTTTTTAT  1368

Query 2197  AACGGCCTTAGCTTTTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCACA  2270
            |.|.|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369  AGCAGCCTTAGCTATTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCACA  1442

Query 2271  GACACCACCTCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACGAACGGCAGTG  2344
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1443  GACACCACCTCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACAAACGGCAGTG  1516

Query 2345  GAAGATACATCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCGCAGTGCAAGCAGCGCCTCCAGCCTCTTCAGC  2418
            ||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.|||||||||||.||||||
Sbjct 1517  GAAGATACATCTCTGCTGCTCCCGGTGCCGAAGCCAAGTACCGCAGTGCAAGCAGTGCCTCCAGCCTTTTCAGC  1590

Query 2419  CCGAGCAGCACTCTTTTCTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTCATGCCTTCTGGCAGGAGCAG  2492
            ||.||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||.||||||||||||||
Sbjct 1591  CCCAGCAGCACCCTTTTTTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTTATGCCCTCTGGCAGGAGCAG  1664

Query 2493  GCTTTTGGAAGATTTTCGAAACAACCGGTACCCCAATTTACAACTGCGGGAGATTGCTGGACATATAATGGAAT  2566
            .|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||
Sbjct 1665  ACTTCTGGAAGATTTTCGAAACAACCGGTACCCTAATTTACAACTGCGGGAGATTGCTGGGCATATAATGGAAT  1738

Query 2567  TTTCCCAAGACCAGCATGGGTCCAGATTCATTCAGCTGAAACTGGAGCGTGCCACACCAGCTGAGCGCCAGCTT  2640
            ||||.||||||||||||||.||.||||||||||||||||||||.||||||||||||.|||||||||||||||||
Sbjct 1739  TTTCTCAAGACCAGCATGGCTCTAGATTCATTCAGCTGAAACTAGAGCGTGCCACAGCAGCTGAGCGCCAGCTT  1812

Query 2641  GTCTTCAATGAAATCCTCCAGGCTGCCTACCAACTCATGGTGGATGTGTTTGGTAATTACGTCATTCAGAAGTT  2714
            ||||||||||||||||||||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct 1813  GTCTTCAATGAAATCCTCCAGGCTGCGTACCAACTTATGGTGGATGTGTTTGGAAATTACGTCATTCAGAAGTT  1886

Query 2715  CTTTGAATTTGGCAGTCTTGAACAGAAGCTGGCTTTGGCAGAACGGATTCGAGGCCACGTCCTGTCATTGGCAC  2788
            .||||||||||||||||.||||||||||||||||.||||.|||||||||||||||||.|||||.||||||||||
Sbjct 1887  TTTTGAATTTGGCAGTCATGAACAGAAGCTGGCTCTGGCTGAACGGATTCGAGGCCATGTCCTATCATTGGCAC  1960

Query 2789  TACAGATGTATGGCTGCCGTGTTATCCAGAAAGCTCTTGAGTTTATTCCTTCAGACCAGCAG------AATGAG  2856
            |.||||||||.||||||||.||.||||||||||||.|.|||||||||||.||||||||||||      ||.|||
Sbjct 1961  TGCAGATGTACGGCTGCCGAGTCATCCAGAAAGCTTTGGAGTTTATTCCCTCAGACCAGCAGGTAATTAACGAG  2034

Query 2857  ATGGTTCGGGAACTAGATGGCCATGTCTTGAAGTGTGTGAAAGATCAGAATGGCAATCACGTGGTTCAGAAATG  2930
            |||||.|||||.|||||||||||||||.||||||||||||||||.|||||.|||||.||.|||||||||||.||
Sbjct 2035  ATGGTGCGGGAGCTAGATGGCCATGTCCTGAAGTGTGTGAAAGACCAGAACGGCAACCATGTGGTTCAGAAGTG  2108

Query 2931  CATTGAATGTGTACAGCCCCAGTCTTTGCAATTTATCATCGATGCGTTTAAGGGACAGGTATTTGCCTTATCCA  3004
            ||||||.|||||||||||||||||||||||.||||||||||||||.||.|||||.|||||.|||||.||.||.|
Sbjct 2109  CATTGAGTGTGTACAGCCCCAGTCTTTGCAGTTTATCATCGATGCATTCAAGGGGCAGGTGTTTGCTTTGTCTA  2182

Query 3005  CACATCCTTATGGCTGCCGAGTGATTCAGAGAATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTTA  3078
            |.||.||.||.|||||..|.|||||.|||||.|||||.|||||||||||||||||||||||.|||||.||..|.
Sbjct 2183  CGCACCCGTACGGCTGTAGGGTGATCCAGAGGATCCTAGAGCACTGTCTCCCTGACCAGACCCTCCCCATCCTG  2256

Query 3079  GAGGAGCTTCACCAGCACACAGAGCAGCTTGTACAGGATCAATATGGAAATTATGTAATCCAACATGTACTGGA  3152
            ||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||
Sbjct 2257  GAGGAGCTTCACCAGCACACAGAGCAGCTTGTGCAGGATCAGTATGGAAATTATGTAATCCAACATGTACTGGA  2330

Query 3153  GCACGGTCGTCCTGAGGATAAAAGCAAAATTGTAGCAGAAATCCGAGGCAATGTACTTGTATTGAGTCAGCACA  3226
            |||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 2331  GCATGGTCGTCCTGAGGATAAAAGCAAAATTGTAGCAGAGATCCGAGGCAATGTACTTGTATTGAGTCAGCACA  2404

Query 3227  AATTTGCAAGCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACGGAGCGCGCTGTGCTCATCGATGAG  3300
            |.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||
Sbjct 2405  AGTTTGCAAGCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACAGAGCGTGCTGTGCTCATTGATGAG  2478

Query 3301  GTGTGCACCATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGACCAGTATGCCAACTACGTGGT  3374
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.|||||
Sbjct 2479  GTGTGCACCATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGATCAGTATGCTAACTATGTGGT  2552

Query 3375  CCAGAAGATGATTGACGTGGCGGAGCCAGGCCAGCGGAAGATCGTCATGCATAAGATCCGGCCCCACATCGCAA  3448
            ||||||||||||.||.|||||.|||||.||.|||||||||||.||||||||.|||||||||||.|||||.||.|
Sbjct 2553  CCAGAAGATGATCGATGTGGCTGAGCCGGGTCAGCGGAAGATTGTCATGCACAAGATCCGGCCACACATTGCGA  2626

Query 3449  CTCTTCGTAAGTACACCTATGGCAAGCACATTCTGGCCAAGCTGGAGAAGTACTACATGAAGAACGGTGTTGAC  3522
            |.|||||.|||||||||||||||||||||||.|||||||||||.||||||||||||||||||||.||.||.|||
Sbjct 2627  CGCTTCGAAAGTACACCTATGGCAAGCACATCCTGGCCAAGCTCGAGAAGTACTACATGAAGAATGGCGTGGAC  2700

Query 3523  TTAGGGCCCATCTGTGGCCCCCCTAATGGTATCATC  3558
            ||.||||||||.|||||.||||||||||||||||||
Sbjct 2701  TTGGGGCCCATTTGTGGTCCCCCTAATGGTATCATC  2736

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