Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07469
Subject:
XM_006539314.3
Aligned Length:
3589
Identities:
2258
Gaps:
1127

Alignment

Query    1  ATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCAGTGCTTTGGCAGGACTCTTTCAGCCCCCACCTGAAACATCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCCTCAAGAACCAGCTAATCCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAGCGCAGCCACAAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGCTGCAAATCAGGCTCTTGCAGCTGGGACTCACTCCAGCCCTGTCCCAGGATCTATAGGAGTTGCAGGCCGT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCCCAGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAGCAGCTTGGGGGAGGAGGAAGTGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGGAGGCGGCTATAATAATAGCAAACATCGATGGCCTACTGGGGATAACATTCATGCAGAACATCAGGTGCGTT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCATGGATGAACTGAATCATGATTTTCAAGCACTTGCTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGTAAAAAGTTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAATATTCCTGGGTGATCAATGGCG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGACAGTGCCTGGGGAACATCAGATCATTCAGTTTCCCAGCCAATCATGGTGCAGAGAAGACCTGGTCAGAGTT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TCCATGTGAACAGTGAGGTCAATTCTGTACTGTCCCCACGATCGGAGAGTGGGGGACTAGGCGTTAGCATGGTG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAGTATGTGTTGAGCTCATCCCCGGGCGATTCCTGTCTAAGAAAAGGAGGATTTGGCCCAAGGGATGCAGACAG  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TGATGAAAACGACAAAGGTGAAAAGAAGAACAAGGGTACGTTTGATGGAGATAAGCTAGGAGATTTGAAGGAGG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AGGGTGATGTGATGGACAAGACCAATGGTTTACCAGTGCAGAATGGGATTGATGCAGACGTCAAAGATTTTAGC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  CGTACCCCTGGTAATTGCCAGAACTCTGCTAATGAAGTGGATCTTCTGGGTCCAAACCAGAATGGTTCTGAGGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTTAGCCCAGCTGACCAGCACCAATGGTGCCAAGCCTGTGGAGGATTTCTCCAACATGGAGTCCCAGAGTGTCC  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  CCTTGGACCCCATGGAACATGTGGGC---ATGGAGCCTCTTCAGTT------TGATTATTCAGGCACGCAGGTA  1101
                       ||||.||      ||   |||||      |.|.||      ||||| ||||.||||     |.
Sbjct    1  -----------ATGGTAC------GCTCTATGGA------TGAATTGAATCATGATT-TTCAAGCAC-----TT  45

Query 1102  CCTGTGGACTCAGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAAC-AGCTGTTCCAAAGACCTA  1174
            .||.||||   ||  |.|| |.||.||||                         | ||||.|||||||||||.|
Sbjct   46  GCTCTGGA---AG--GGAG-AGCTATGGG-------------------------CGAGCTATTCCAAAGACCCA  88

Query 1175  ATGCGCTTGCTGTCCAGCAGTTGACAGCTGCTCAGCAGCAGCAGTATGCACTGGCAGCTGCTCATCAGCCGCAC  1248
            ||||.||||||||.|||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||.|||
Sbjct   89  ATGCACTTGCTGTTCAGCAGTTGACAGCTGCCCAGCAGCAGCAGTATGCACTTGCAGCAGCCCACCAGCCTCAC  162

Query 1249  ATC---------------GGTTTAGCTCCCGCTGCGTTTGTCCCCAATCCATACATCATCAGCGCTGCTCCCCC  1307
            |||               |||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  163  ATCGGTATGTTTCCAGCAGGTTTAGCTCCCGCTGCGTTTGTCCCCAACCCATACATCATCAGCGCTGCTCCCCC  236

Query 1308  AGGGACGGACCCCTACACAGCTGGATTGGCTGCAGCAGCGACACTAGGCCCAGCTGTGGTCCCTCACCAGTATT  1381
            |||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct  237  AGGGACGGACCCCTACACAGCTGGATTGGCTGCAGCAGCGACACTCGGCCCAGCTGTGGTCCCTCACCAATATT  310

Query 1382  ATGGAGTTACTCCCTGGGGAGTCTACCCTGCCAGTCTTTTCCAGCAGCAAGCTGCCGCTGCCGCTGCAGCAACT  1455
            |||||||.||.||.|||||.|||||||||||||||||.|||||||||||.||.||.||.||.||.|||||.||.
Sbjct  311  ATGGAGTCACGCCATGGGGTGTCTACCCTGCCAGTCTCTTCCAGCAGCAGGCAGCTGCAGCTGCAGCAGCTACA  384

Query 1456  AATTCAGCTAATCAACAGACCACCCCACAGGCTCAGCAAGGACAGCAGCAGGTTCTCCGTGGAGGAGCCAGCCA  1529
            ||.||.||||.|||.||||.|.|.||.|||||.|||||.|||||||||||||||||.|||||||||||.|||||
Sbjct  385  AACTCTGCTACTCAGCAGAGCGCTCCGCAGGCCCAGCAGGGACAGCAGCAGGTTCTTCGTGGAGGAGCTAGCCA  458

Query 1530  ACGTCCTTTGACCCCAAACCAGAACCAGCAGGGACAGCAAACGGATCCCCTTGTGGCAGCTGCAGCAGTGAATT  1603
            ||||||||||||||||||.|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||
Sbjct  459  ACGTCCTTTGACCCCAAATCAGAACCAGCAGGGACAACAAACAGATCCCCTTGTAGCAGCTGCAGCAGTGAATT  532

Query 1604  CTGCCCTTGCATTTGGACAAGGTCTGGCAGCAGGCATGCCAGGTTATCCGGTGTTGGCTCCTGCTGCTTACTAT  1677
            ||||.|||||.|||||||||||..||||.|||||.||||||||||||||.||.|||||.|||||||||||||||
Sbjct  533  CTGCTCTTGCCTTTGGACAAGGATTGGCTGCAGGTATGCCAGGTTATCCAGTCTTGGCACCTGCTGCTTACTAT  606

Query 1678  GACCAAACTGGTGCCCTTGTAGTGAATGCAGGCGCGAGAAATGGTCTTGGAGCTCCTGTTCGACTTGTAGCTCC  1751
            ||||||||||||||||||||.|||||||||||.||.||||||||.||.||||||||.||.||.|||||.|||||
Sbjct  607  GACCAAACTGGTGCCCTTGTGGTGAATGCAGGGGCAAGAAATGGCCTCGGAGCTCCAGTCCGGCTTGTTGCTCC  680

Query 1752  TGCCCCAGTCATCATTAGTTCCTCAGCTGCACAAGCAGCTGTTGCAGCAGCCGCAGCTTCAGCAAATGGAGCAG  1825
            .|||||||||||||||||.|||||||||||||||||||||||||||||.||.|||||.||||||||.|||||||
Sbjct  681  AGCCCCAGTCATCATTAGCTCCTCAGCTGCACAAGCAGCTGTTGCAGCGGCTGCAGCGTCAGCAAACGGAGCAG  754

Query 1826  CTGGTGGTCTTGCTGGAACAACAAATGGACCATTTCGCCCTTTAGGAACACAGCAGCCTCAGCCCCAGCCCCAG  1899
            |||||||||||||.|||||.|||||||||||||||||.||||||||.||.||||||||.|||||||||||.|||
Sbjct  755  CTGGTGGTCTTGCCGGAACTACAAATGGACCATTTCGACCTTTAGGCACCCAGCAGCCCCAGCCCCAGCCTCAG  828

Query 1900  CAGCAGCCCAATAACAACCTGGCATCCAGTTCTTTCTACGGCAACAACTCTCTGAACAGCAATTCACAGAGCAG  1973
            ||||||||||.||||||.|||||.|||||.||||||||.||||||||||||||||.|||.||.||.||||||||
Sbjct  829  CAGCAGCCCAGTAACAATCTGGCTTCCAGCTCTTTCTATGGCAACAACTCTCTGAGCAGTAACTCCCAGAGCAG  902

Query 1974  CTCCCTCTTCTCCCAGGGCTCTGCCCAGCCTGCCAACACATCCTTGGGATTCGGAAGTAGCAGTTCTCTCGGCG  2047
            ||||||||||||.|||||||||||.||||||||||||||.|||||||||||||||||.||||||||.||.||.|
Sbjct  903  CTCCCTCTTCTCTCAGGGCTCTGCACAGCCTGCCAACACGTCCTTGGGATTCGGAAGCAGCAGTTCCCTTGGTG  976

Query 2048  CCACCCTGGGATCCGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGT  2121
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  977  CCACCCTGGGATCGGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGT  1050

Query 2122  GACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTA  2195
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1051  GACTCCCTGACTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGGCCCCCATTGGACACAGTTTTTA  1124

Query 2196  TAACGGCCTTAGCTTTTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCAC  2269
            ||.|.|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125  TAGCAGCCTTAGCTATTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCAC  1198

Query 2270  AGACACCACCTCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACGAACGGCAGT  2343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 1199  AGACACCACCTCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACAAACGGCAGT  1272

Query 2344  GGAAGATACATCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCGCAGTGCAAGCAGCGCCTCCAGCCTCTTCAG  2417
            |||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.|||||||||||.|||||
Sbjct 1273  GGAAGATACATCTCTGCTGCTCCCGGTGCCGAAGCCAAGTACCGCAGTGCAAGCAGTGCCTCCAGCCTTTTCAG  1346

Query 2418  CCCGAGCAGCACTCTTTTCTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTCATGCCTTCTGGCAGGAGCA  2491
            |||.||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||.|||||||||||||
Sbjct 1347  CCCCAGCAGCACCCTTTTTTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTTATGCCCTCTGGCAGGAGCA  1420

Query 2492  GGCTTTTGGAAGATTTTCGAAACAACCGGTACCCCAATTTACAACTGCGGGAGATTGCTGGACATATAATGGAA  2565
            |.|||.||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||
Sbjct 1421  GACTTCTGGAAGATTTTCGAAACAACCGGTACCCTAATTTACAACTGCGGGAGATTGCTGGGCATATAATGGAA  1494

Query 2566  TTTTCCCAAGACCAGCATGGGTCCAGATTCATTCAGCTGAAACTGGAGCGTGCCACACCAGCTGAGCGCCAGCT  2639
            |||||.||||||||||||||.||.||||||||||||||||||||.||||||||||||.||||||||||||||||
Sbjct 1495  TTTTCTCAAGACCAGCATGGCTCTAGATTCATTCAGCTGAAACTAGAGCGTGCCACAGCAGCTGAGCGCCAGCT  1568

Query 2640  TGTCTTCAATGAAATCCTCCAGGCTGCCTACCAACTCATGGTGGATGTGTTTGGTAATTACGTCATTCAGAAGT  2713
            |||||||||||||||||||||||||||.||||||||.|||||||||||||||||.|||||||||||||||||||
Sbjct 1569  TGTCTTCAATGAAATCCTCCAGGCTGCGTACCAACTTATGGTGGATGTGTTTGGAAATTACGTCATTCAGAAGT  1642

Query 2714  TCTTTGAATTTGGCAGTCTTGAACAGAAGCTGGCTTTGGCAGAACGGATTCGAGGCCACGTCCTGTCATTGGCA  2787
            |.||||||||||||||||.||||||||||||||||.||||.|||||||||||||||||.|||||.|||||||||
Sbjct 1643  TTTTTGAATTTGGCAGTCATGAACAGAAGCTGGCTCTGGCTGAACGGATTCGAGGCCATGTCCTATCATTGGCA  1716

Query 2788  CTACAGATGTATGGCTGCCGTGTTATCCAGAAAGCTCTTGAGTTTATTCCTTCAGACCAGCAG------AATGA  2855
            ||.||||||||.||||||||.||.||||||||||||.|.|||||||||||.||||||||||||      ||.||
Sbjct 1717  CTGCAGATGTACGGCTGCCGAGTCATCCAGAAAGCTTTGGAGTTTATTCCCTCAGACCAGCAGGTAATTAACGA  1790

Query 2856  GATGGTTCGGGAACTAGATGGCCATGTCTTGAAGTGTGTGAAAGATCAGAATGGCAATCACGTGGTTCAGAAAT  2929
            ||||||.|||||.|||||||||||||||.||||||||||||||||.|||||.|||||.||.|||||||||||.|
Sbjct 1791  GATGGTGCGGGAGCTAGATGGCCATGTCCTGAAGTGTGTGAAAGACCAGAACGGCAACCATGTGGTTCAGAAGT  1864

Query 2930  GCATTGAATGTGTACAGCCCCAGTCTTTGCAATTTATCATCGATGCGTTTAAGGGACAGGTATTTGCCTTATCC  3003
            |||||||.|||||||||||||||||||||||.||||||||||||||.||.|||||.|||||.|||||.||.||.
Sbjct 1865  GCATTGAGTGTGTACAGCCCCAGTCTTTGCAGTTTATCATCGATGCATTCAAGGGGCAGGTGTTTGCTTTGTCT  1938

Query 3004  ACACATCCTTATGGCTGCCGAGTGATTCAGAGAATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTT  3077
            ||.||.||.||.|||||..|.|||||.|||||.|||||.|||||||||||||||||||||||.|||||.||..|
Sbjct 1939  ACGCACCCGTACGGCTGTAGGGTGATCCAGAGGATCCTAGAGCACTGTCTCCCTGACCAGACCCTCCCCATCCT  2012

Query 3078  AGAGGAGCTTCACCAGCACACAGAGCAGCTTGTACAGGATCAATATGGAAATTATGTAATCCAACATGTACTGG  3151
            .||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||
Sbjct 2013  GGAGGAGCTTCACCAGCACACAGAGCAGCTTGTGCAGGATCAGTATGGAAATTATGTAATCCAACATGTACTGG  2086

Query 3152  AGCACGGTCGTCCTGAGGATAAAAGCAAAATTGTAGCAGAAATCCGAGGCAATGTACTTGTATTGAGTCAGCAC  3225
            ||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 2087  AGCATGGTCGTCCTGAGGATAAAAGCAAAATTGTAGCAGAGATCCGAGGCAATGTACTTGTATTGAGTCAGCAC  2160

Query 3226  AAATTTGCAAGCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACGGAGCGCGCTGTGCTCATCGATGA  3299
            ||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||
Sbjct 2161  AAGTTTGCAAGCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACAGAGCGTGCTGTGCTCATTGATGA  2234

Query 3300  GGTGTGCACCATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGACCAGTATGCCAACTACGTGG  3373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||||
Sbjct 2235  GGTGTGCACCATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGATCAGTATGCTAACTATGTGG  2308

Query 3374  TCCAGAAGATGATTGACGTGGCGGAGCCAGGCCAGCGGAAGATCGTCATGCATAAGATCCGGCCCCACATCGCA  3447
            |||||||||||||.||.|||||.|||||.||.|||||||||||.||||||||.|||||||||||.|||||.||.
Sbjct 2309  TCCAGAAGATGATCGATGTGGCTGAGCCGGGTCAGCGGAAGATTGTCATGCACAAGATCCGGCCACACATTGCG  2382

Query 3448  ACTCTTCGTAAGTACACCTATGGCAAGCACATTCTGGCCAAGCTGGAGAAGTACTACATGAAGAACGGTGTTGA  3521
            ||.|||||.|||||||||||||||||||||||.|||||||||||.||||||||||||||||||||.||.||.||
Sbjct 2383  ACGCTTCGAAAGTACACCTATGGCAAGCACATCCTGGCCAAGCTCGAGAAGTACTACATGAAGAATGGCGTGGA  2456

Query 3522  CTTAGGGCCCATCTGTGGCCCCCCTAATGGTATCATC  3558
            |||.||||||||.|||||.||||||||||||||||||
Sbjct 2457  CTTGGGGCCCATTTGTGGTCCCCCTAATGGTATCATC  2493

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