Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07469
Subject:
XM_017320466.1
Aligned Length:
3579
Identities:
2345
Gaps:
1038

Alignment

Query    1  ATGAGCGTTGCATGTGTCTTGAAGAGAAAAGCAGTGCTTTGGCAGGACTCTTTCAGCCCCCACCTGAAACATCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCCTCAAGAACCAGCTAATCCCAACATGCCTGTTGTTTTGACATCTGGAACAGGGTCGCAAGCGCAGCCACAAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGCTGCAAATCAGGCTCTTGCAGCTGGGACTCACTCCAGCCCTGTCCCAGGATCTATAGGAGTTGCAGGCCGT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCCCAGGACGACGCTATGGTGGACTACTTCTTTCAGAGGCAGCATGGTGAGCAGCTTGGGGGAGGAGGAAGTGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGGAGGCGGCTATAATAATAGCAAACATCGATGGCCTACTGGGGATAACATTCATGCAGAACATCAGGTGCGTT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCATGGATGAACTGAATCATGATTTTCAAGCACTTGCTCTGGAGGGAAGAGCGATGGGAGAGCAGCTCTTGCCA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGTAAAAAGTTTTGGGAAACAGATGAATCCAGCAAAGATGGACCAAAAGGAATATTCCTGGGTGATCAATGGCG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGACAGTGCCTGGGGAACATCAGATCATTCAGTTTCCCAGCCAATCATGGTGCAGAGAAGACCTGGTCAGAGTT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TCCATGTGAACAGTGAGGTCAATTCTGTACTGTCCCCACGATCGGAGAGTGGGGGACTAGGCGTTAGCATGGTG  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  GAGTATGTGTTGAGCTCATCCCCGGGCGATTCCTGTCTAAGAAAAGGAGGATTTGGCCCAAGGGATGCAGACAG  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TGATGAAAACGACAAAGGTGAAAAGAAGAACAAGGGTACGTTTGATGGAGATAAGCTAGGAGATTTGAAGGAGG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AGGGTGATGTGATGGACAAGACCAATGGTTTACCAGTGCAGAATGGGATTGATGCAGACGTCAAAGATTTTAGC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  CGTACCCCTGGTAATTGCCAGAACTCTGCTAATGAAGTGGATCTTCTGGGTCCAAACCAGAATGGTTCTGAGGG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CTTAGCCCAGCTGACCAGCACCAATGGTGCCAAGCCTGTGGAGGATTTCTCCAACATGGAGTCCCAGAGTGTCC  1036
                                                                   |||||||||||||||||||
Sbjct    1  -------------------------------------------------------ATGGAGTCCCAGAGTGTCC  19

Query 1037  CCTTGGACCCCATGGAACATGTGGGCATGGAGCCTCTTCAGTTTGATTATTCAGGCACGCAGGTACCTGTGGAC  1110
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct   20  CCTTGGACCCCATGGAACATGTGGGCATGGAGCCTCTGCAGTTTGATTATTCAGGCACGCAGGTACCTGTGGAC  93

Query 1111  TCAGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAACAGCTGTTCCAAAGACCTAATGCGCTTGC  1184
            ||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||.|||||
Sbjct   94  TCTGCAGCAGCAACTGTGGGACTTTTTGACTACAATTCTCAACAACAGCTATTCCAAAGACCCAATGCACTTGC  167

Query 1185  TGTCCAGCAGTTGACAGCTGCTCAGCAGCAGCAGTATGCACTGGCAGCTGCTCATCAGCCGCACATC-------  1251
            |||.|||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||.||||||       
Sbjct  168  TGTTCAGCAGTTGACAGCTGCCCAGCAGCAGCAGTATGCACTTGCAGCAGCCCACCAGCCTCACATCGGTATGT  241

Query 1252  --------GGTTTAGCTCCCGCTGCGTTTGTCCCCAATCCATACATCATCAGCGCTGCTCCCCCAGGGACGGAC  1317
                    |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  242  TTCCAGCAGGTTTAGCTCCCGCTGCGTTTGTCCCCAACCCATACATCATCAGCGCTGCTCCCCCAGGGACGGAC  315

Query 1318  CCCTACACAGCTGGATTGGCTGCAGCAGCGACACTAGGCCCAGCTGTGGTCCCTCACCAGTATTATGGAGTTAC  1391
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.||
Sbjct  316  CCCTACACAGCTGGATTGGCTGCAGCAGCGACACTCGGCCCAGCTGTGGTCCCTCACCAATATTATGGAGTCAC  389

Query 1392  TCCCTGGGGAGTCTACCCTGCCAGTCTTTTCCAGCAGCAAGCTGCCGCTGCCGCTGCAGCAACTAATTCAGCTA  1465
            .||.|||||.|||||||||||||||||.|||||||||||.||.||.||.||.||.|||||.||.||.||.||||
Sbjct  390  GCCATGGGGTGTCTACCCTGCCAGTCTCTTCCAGCAGCAGGCAGCTGCAGCTGCAGCAGCTACAAACTCTGCTA  463

Query 1466  ATCAACAGACCACCCCACAGGCTCAGCAAGGACAGCAGCAGGTTCTCCGTGGAGGAGCCAGCCAACGTCCTTTG  1539
            .|||.||||.|.|.||.|||||.|||||.|||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct  464  CTCAGCAGAGCGCTCCGCAGGCCCAGCAGGGACAGCAGCAGGTTCTTCGTGGAGGAGCTAGCCAACGTCCTTTG  537

Query 1540  ACCCCAAACCAGAACCAGCAGGGACAGCAAACGGATCCCCTTGTGGCAGCTGCAGCAGTGAATTCTGCCCTTGC  1613
            ||||||||.|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||.|||||
Sbjct  538  ACCCCAAATCAGAACCAGCAGGGACAACAAACAGATCCCCTTGTAGCAGCTGCAGCAGTGAATTCTGCTCTTGC  611

Query 1614  ATTTGGACAAGGTCTGGCAGCAGGCATGCCAGGTTATCCGGTGTTGGCTCCTGCTGCTTACTATGACCAAACTG  1687
            .|||||||||||..||||.|||||.||||||||||||||.||.|||||.|||||||||||||||||||||||||
Sbjct  612  CTTTGGACAAGGATTGGCTGCAGGTATGCCAGGTTATCCAGTCTTGGCACCTGCTGCTTACTATGACCAAACTG  685

Query 1688  GTGCCCTTGTAGTGAATGCAGGCGCGAGAAATGGTCTTGGAGCTCCTGTTCGACTTGTAGCTCCTGCCCCAGTC  1761
            ||||||||||.|||||||||||.||.||||||||.||.||||||||.||.||.|||||.|||||.|||||||||
Sbjct  686  GTGCCCTTGTGGTGAATGCAGGGGCAAGAAATGGCCTCGGAGCTCCAGTCCGGCTTGTTGCTCCAGCCCCAGTC  759

Query 1762  ATCATTAGTTCCTCAGCTGCACAAGCAGCTGTTGCAGCAGCCGCAGCTTCAGCAAATGGAGCAGCTGGTGGTCT  1835
            ||||||||.|||||||||||||||||||||||||||||.||.|||||.||||||||.|||||||||||||||||
Sbjct  760  ATCATTAGCTCCTCAGCTGCACAAGCAGCTGTTGCAGCGGCTGCAGCGTCAGCAAACGGAGCAGCTGGTGGTCT  833

Query 1836  TGCTGGAACAACAAATGGACCATTTCGCCCTTTAGGAACACAGCAGCCTCAGCCCCAGCCCCAGCAGCAGCCCA  1909
            |||.|||||.|||||||||||||||||.||||||||.||.||||||||.|||||||||||.|||||||||||||
Sbjct  834  TGCCGGAACTACAAATGGACCATTTCGACCTTTAGGCACCCAGCAGCCCCAGCCCCAGCCTCAGCAGCAGCCCA  907

Query 1910  ATAACAACCTGGCATCCAGTTCTTTCTACGGCAACAACTCTCTGAACAGCAATTCACAGAGCAGCTCCCTCTTC  1983
            .||||||.|||||.|||||.||||||||.||||||||||||||||.|||.||.||.||||||||||||||||||
Sbjct  908  GTAACAATCTGGCTTCCAGCTCTTTCTATGGCAACAACTCTCTGAGCAGTAACTCCCAGAGCAGCTCCCTCTTC  981

Query 1984  TCCCAGGGCTCTGCCCAGCCTGCCAACACATCCTTGGGATTCGGAAGTAGCAGTTCTCTCGGCGCCACCCTGGG  2057
            ||.|||||||||||.||||||||||||||.|||||||||||||||||.||||||||.||.||.|||||||||||
Sbjct  982  TCTCAGGGCTCTGCACAGCCTGCCAACACGTCCTTGGGATTCGGAAGCAGCAGTTCCCTTGGTGCCACCCTGGG  1055

Query 2058  ATCCGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTGACTCCCTGA  2131
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056  ATCGGCCCTTGGAGGGTTTGGAACAGCAGTTGCAAACTCCAACACTGGCAGTGGCTCCCGCCGTGACTCCCTGA  1129

Query 2132  CTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGACCCCCATTGGACACAGTTTTTATAACGGCCTT  2205
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||.|.|||||
Sbjct 1130  CTGGCAGCAGTGACCTTTATAAGAGGACATCGAGCAGCTTGGCCCCCATTGGACACAGTTTTTATAGCAGCCTT  1203

Query 2206  AGCTTTTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCACAGACACCACC  2279
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204  AGCTATTCCTCCTCTCCTGGACCCGTGGGCATGCCTCTCCCTAGTCAGGGACCAGGACATTCACAGACACCACC  1277

Query 2280  TCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACGAACGGCAGTGGAAGATACA  2353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1278  TCCTTCCCTCTCTTCACATGGATCCTCTTCAAGCTTAAACCTGGGAGGACTCACAAACGGCAGTGGAAGATACA  1351

Query 2354  TCTCTGCTGCTCCAGGCGCTGAAGCCAAGTACCGCAGTGCAAGCAGCGCCTCCAGCCTCTTCAGCCCGAGCAGC  2427
            |||||||||||||.||.||.||||||||||||||||||||||||||.|||||||||||.||||||||.||||||
Sbjct 1352  TCTCTGCTGCTCCCGGTGCCGAAGCCAAGTACCGCAGTGCAAGCAGTGCCTCCAGCCTTTTCAGCCCCAGCAGC  1425

Query 2428  ACTCTTTTCTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTCATGCCTTCTGGCAGGAGCAGGCTTTTGGA  2501
            ||.|||||.|||||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||.||||
Sbjct 1426  ACCCTTTTTTCTTCCTCTCGTTTGCGATATGGAATGTCTGATGTTATGCCCTCTGGCAGGAGCAGACTTCTGGA  1499

Query 2502  AGATTTTCGAAACAACCGGTACCCCAATTTACAACTGCGGGAGATTGCTGGACATATAATGGAATTTTCCCAAG  2575
            ||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||.||||
Sbjct 1500  AGATTTTCGAAACAACCGGTACCCTAATTTACAACTGCGGGAGATTGCTGGGCATATAATGGAATTTTCTCAAG  1573

Query 2576  ACCAGCATGGGTCCAGATTCATTCAGCTGAAACTGGAGCGTGCCACACCAGCTGAGCGCCAGCTTGTCTTCAAT  2649
            ||||||||||.||.||||||||||||||||||||.||||||||||||.||||||||||||||||||||||||||
Sbjct 1574  ACCAGCATGGCTCTAGATTCATTCAGCTGAAACTAGAGCGTGCCACAGCAGCTGAGCGCCAGCTTGTCTTCAAT  1647

Query 2650  GAAATCCTCCAGGCTGCCTACCAACTCATGGTGGATGTGTTTGGTAATTACGTCATTCAGAAGTTCTTTGAATT  2723
            |||||||||||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 1648  GAAATCCTCCAGGCTGCGTACCAACTTATGGTGGATGTGTTTGGAAATTACGTCATTCAGAAGTTTTTTGAATT  1721

Query 2724  TGGCAGTCTTGAACAGAAGCTGGCTTTGGCAGAACGGATTCGAGGCCACGTCCTGTCATTGGCACTACAGATGT  2797
            ||||||||.||||||||||||||||.||||.|||||||||||||||||.|||||.|||||||||||.|||||||
Sbjct 1722  TGGCAGTCATGAACAGAAGCTGGCTCTGGCTGAACGGATTCGAGGCCATGTCCTATCATTGGCACTGCAGATGT  1795

Query 2798  ATGGCTGCCGTGTTATCCAGAAAGCTCTTGAGTTTATTCCTTCAGACCAGCAG------AATGAGATGGTTCGG  2865
            |.||||||||.||.||||||||||||.|.|||||||||||.||||||||||||      ||.||||||||.|||
Sbjct 1796  ACGGCTGCCGAGTCATCCAGAAAGCTTTGGAGTTTATTCCCTCAGACCAGCAGGTAATTAACGAGATGGTGCGG  1869

Query 2866  GAACTAGATGGCCATGTCTTGAAGTGTGTGAAAGATCAGAATGGCAATCACGTGGTTCAGAAATGCATTGAATG  2939
            ||.|||||||||||||||.||||||||||||||||.|||||.|||||.||.|||||||||||.||||||||.||
Sbjct 1870  GAGCTAGATGGCCATGTCCTGAAGTGTGTGAAAGACCAGAACGGCAACCATGTGGTTCAGAAGTGCATTGAGTG  1943

Query 2940  TGTACAGCCCCAGTCTTTGCAATTTATCATCGATGCGTTTAAGGGACAGGTATTTGCCTTATCCACACATCCTT  3013
            |||||||||||||||||||||.||||||||||||||.||.|||||.|||||.|||||.||.||.||.||.||.|
Sbjct 1944  TGTACAGCCCCAGTCTTTGCAGTTTATCATCGATGCATTCAAGGGGCAGGTGTTTGCTTTGTCTACGCACCCGT  2017

Query 3014  ATGGCTGCCGAGTGATTCAGAGAATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTTAGAGGAGCTT  3087
            |.|||||..|.|||||.|||||.|||||.|||||||||||||||||||||||.|||||.||..|.|||||||||
Sbjct 2018  ACGGCTGTAGGGTGATCCAGAGGATCCTAGAGCACTGTCTCCCTGACCAGACCCTCCCCATCCTGGAGGAGCTT  2091

Query 3088  CACCAGCACACAGAGCAGCTTGTACAGGATCAATATGGAAATTATGTAATCCAACATGTACTGGAGCACGGTCG  3161
            |||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 2092  CACCAGCACACAGAGCAGCTTGTGCAGGATCAGTATGGAAATTATGTAATCCAACATGTACTGGAGCATGGTCG  2165

Query 3162  TCCTGAGGATAAAAGCAAAATTGTAGCAGAAATCCGAGGCAATGTACTTGTATTGAGTCAGCACAAATTTGCAA  3235
            ||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||
Sbjct 2166  TCCTGAGGATAAAAGCAAAATTGTAGCAGAGATCCGAGGCAATGTACTTGTATTGAGTCAGCACAAGTTTGCAA  2239

Query 3236  GCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACGGAGCGCGCTGTGCTCATCGATGAGGTGTGCACC  3309
            ||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||
Sbjct 2240  GCAATGTTGTGGAGAAGTGTGTTACTCACGCCTCACGTACAGAGCGTGCTGTGCTCATTGATGAGGTGTGCACC  2313

Query 3310  ATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGACCAGTATGCCAACTACGTGGTCCAGAAGAT  3383
            ||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||||||||||||||
Sbjct 2314  ATGAACGACGGTCCCCACAGTGCCTTATACACCATGATGAAGGATCAGTATGCTAACTATGTGGTCCAGAAGAT  2387

Query 3384  GATTGACGTGGCGGAGCCAGGCCAGCGGAAGATCGTCATGCATAAGATCCGGCCCCACATCGCAACTCTTCGTA  3457
            |||.||.|||||.|||||.||.|||||||||||.||||||||.|||||||||||.|||||.||.||.|||||.|
Sbjct 2388  GATCGATGTGGCTGAGCCGGGTCAGCGGAAGATTGTCATGCACAAGATCCGGCCACACATTGCGACGCTTCGAA  2461

Query 3458  AGTACACCTATGGCAAGCACATTCTGGCCAAGCTGGAGAAGTACTACATGAAGAACGGTGTTGACTTAGGGCCC  3531
            ||||||||||||||||||||||.|||||||||||.||||||||||||||||||||.||.||.|||||.||||||
Sbjct 2462  AGTACACCTATGGCAAGCACATCCTGGCCAAGCTCGAGAAGTACTACATGAAGAATGGCGTGGACTTGGGGCCC  2535

Query 3532  ATCTGTGGCCCCCCTAATGGTATCATC  3558
            ||.|||||.||||||||||||||||||
Sbjct 2536  ATTTGTGGTCCCCCTAATGGTATCATC  2562

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