Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07481
Subject:
NM_001286445.3
Aligned Length:
3141
Identities:
1772
Gaps:
1368

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCAGTTTTTTGATGCTGAGGAGCTCCTGGTCGATGAAGAGGATGATGTTTTTGGTGAAGGACTACCGACCAG  74

Query    1  -------------ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGT  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ACTCCCGGAAATCATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGT  148

Query   62  CCTTTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTC  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CCTTTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTC  222

Query  136  AAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCA  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCA  296

Query  210  GCCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGG  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGG  370

Query  284  AGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGAC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGAC  444

Query  358  AAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGA  431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGA  518

Query  432  AGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCA  505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCA  592

Query  506  GCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATT  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATT  666

Query  580  GAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTG  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTG  740

Query  654  TCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAA  727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAA  814

Query  728  ATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTC  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTC  888

Query  802  ACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGC  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGC  962

Query  876  CCGACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATC  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCGACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATC  1036

Query  950  CATTTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCC  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CATTTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCC  1110

Query 1024  ATGTACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACAT  1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATGTACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACAT  1184

Query 1098  CTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACT  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACT  1258

Query 1172  GCGCCCTCACCTCCCACTCAACAGGCTCCCCTTCCAACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAG  1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCGCCCTCACCTCCCACTCAACAGGCTCCCCTTCCAACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAG  1332

Query 1246  TTTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCT  1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TTTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCT  1406

Query 1320  GGGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCC  1393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCC  1480

Query 1394  CATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAA  1467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAA  1554

Query 1468  GCACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCAC  1541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCAC  1628

Query 1542  AAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTG  1615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTG  1702

Query 1616  TTGGTGGAGAATCTGAAGGCTGCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTT  1689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTGGTGGAGAATCTGAAGGCTGCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTT  1776

Query 1690  GCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATAT  1763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1777  GCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGATGATAT  1850

Query 1764  TCTAAAA---AAG-------------------------------------------------------------  1773
            |||||||   |||                                                             
Sbjct 1851  TCTAAAATGCAAGCCAGCAGTAAGCCGCAGCAGGTCTTCCAGTTTAAGTCTCACAGTTGAAAGTGCTTTAGAAA  1924

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1925  GCTTTGATTTCCTGAACACCTCTGATTTTGACGAGGAGGAGGATGGTGATGAGGTTTGTAATGTTGGCGGAGGT  1998

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1999  GCTGACTCAGTATTTTCAGACACTGAGACTGAGAAACACAGTTACAGGTCGGTTCACCCAGAAGCCAGGGGGCA  2072

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2073  TCTCAGTGAAGCGCTCACTGAAGACACAGGAGTTGGGACCAGTGTGGCAGGAAGTCCTCTCCCACTGACCACAG  2146

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2147  GCAACGAGAGCCTGGACATCACCATCGTCAGGCACCTCCAGTACTGCACCCAACTCGTGCAGCAAATTGTTTTC  2220

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2221  TCAAGCAAAACCCCATTTGTGGCAAGAAGTCTCTTAGAGAAGCTTTCTAGGCAGATCCAAGTGATGGAGAAACT  2294

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2295  CGCAGCTGTCAGTGATGAGAACATAGGAAATATCAGTTCTGTTGTGGAAGCCATACCAGAATTTCACAAAAAGC  2368

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2369  TGTCTTTGCTGTCATTCTGGACCAAGTGCTGCAGCCCTGTTGGTGTCTACCACAGCCCAGCGGACAGAGTGATG  2442

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2443  AAGCAGCTGGAGGCCAGCTTTGCCAGAACTGTCAACAAAGAATATCCAGGACTTGCAGACCCAGTGTTTCGAAC  2516

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2517  CCTGGTGTCCCAAATTCTGGACCGGGCTGAGCCTCTGCTTTCCTCCAGCCTGTCCTCGGAAGTCGTCACTGTTT  2590

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2591  TCCAGTATTACAGTTACTTCACCAGCCACGGCGTCAGTGACCTGGAGAGTTACCTGAGCCAGCTGGCCAGGCAA  2664

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2665  GTTTCCATGGTTCAGACTCTGCAATCACTAAGAGATGAAAAACTGCTACAAACCATGAGTGACCTTGCTCCCAG  2738

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2739  CAACCTCCTGGCCCAGCAGGAAGTACTCAGGACTCTGGCTCTGCTATTAACCAGAGAGGACAACGAAGTTAGTG  2812

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2813  AGGCTGTGACGCTTTACTTGGCAGCAGCCTCCAAAAATCAGCATTTCAGGGAAAAGGCCTTGCTCTATTACTGT  2886

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2887  GAAGCACTAACAAAGACAAACCTCCAGCTCCAGAAAGCAGCTTGCCTGGCTCTGAAAATCCTTGAGGCTACTGA  2960

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2961  AAGCATTAAAATGCTGGTGACATTGTGTCAATCTGATACTGAAGAAATCAGAAATGTGGCCTCAGAAACCCTCT  3034

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3035  TGTCTCTGGGAGAAGATGGGCGGCTGGCATATGAACAATTGGACAAATTTCCTCGAGACTGTGTTAAAGTCGGA  3108

Query 1774  ---------------------------------  1773
                                             
Sbjct 3109  GGTCGTCATGGAACTGAAGTTGCCACAGCCTTT  3141

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