Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07481
Subject:
NM_029679.2
Aligned Length:
3265
Identities:
1492
Gaps:
1523

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCCACCCGGTACTAAGCGTCTCCGGGCACTAGGAGCGTTCTCGGCAGGACTGCCAACCAGACTCCCAGAAAT  74

Query    1  -ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAGTCCTTTGCGGGTT  73
             |||.||||.|||||||||||.||.||.|||||.|||||||||||.|||||..|.|||||||||||.||.||||
Sbjct   75  CATGCTGGTGGGATCCCAGTCCTTCTCTCCTGGCGGGCCCAATGGCATCATCCGGAGCCAGTCCTTCGCAGGTT  148

Query   74  TCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCTCAAGAAGCCTCAG  147
            ||||.||.||.|||||||||||.|||||||||||||||||||||||||||.||||.||||||||||||||||||
Sbjct  149  TCAGTGGGCTGCAGGAAAGGCGGTCCAGGTGTAACTCCTTCATTGAAAATGCCTCGGCTCTCAAGAAGCCTCAG  222

Query  148  GCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTCAGCCTAAAAGGGT  221
            |||||.||||||||||||||.|||.|.||.||||||||.|||||..|.|||||.|||||||||||.||.||.||
Sbjct  223  GCCAAGCTGAAGAAAATGCATAATCTTGGACACAAAAATAACAACACTCCCAAGGAGCCTCAGCCGAAGAGAGT  296

Query  222  GGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACGGAGCTGGACAAGT  295
            |||.||.||||||.||||||||||.||.||.||||||||.||.||||||.||||||||||||||||||||||.|
Sbjct  297  GGAGGAGGTCTACCGGGCCTTGAAGAACGGGCTTGATGAGTACCTGGAGTTTCACCAGACGGAGCTGGACAAAT  370

Query  296  TGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGACAAGCAAATTAAA  369
            ||||.|||||.||||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  371  TGACTGCTCAATTAAAAGATATGAAGAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAGCAAATTAAA  444

Query  370  ACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATGAAGCTTATTGTAT  443
            ||.|||||.|||||||||.||||||||||||||||.||.|||||||||||.||.|||||||||||.||||||||
Sbjct  445  ACGATTGAGAGATACATGCGACGCCTGGAGTTTCACATTAGTAAGGTAGACGAGCTCTATGAAGCCTATTGTAT  518

Query  444  CCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCCAGCAAAGCTGCCC  517
            |||.||.||.|||||.||||||||||||||||||||||||||||||||.||.||||||||||||||.|||||||
Sbjct  519  CCAACGGCGTCTCCAAGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCGACGTCCCCTGCCAGCAAGGCTGCCC  592

Query  518  GGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCATTGAAGTGGAGCTA  591
            |||||||||||.|.||||||||.||.||||.||||||.|||||.|||||.|||||..|||||||||.||||.|.
Sbjct  593  GGGAGAGTCTGTCTGAGATCAACCGCAGCTACAAGGAATACACGGAGAACATGTGTGCCATTGAAGCGGAGTTG  666

Query  592  GAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCTGTCCTGGAGATCA  665
            ||||.||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  667  GAGAGTCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCCCGCCTCTGTCCTGGAGATCA  740

Query  666  ATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTAAATGGCAAGCAGA  739
            ||||||||||||||||||||||||.||||||.|||||||||||||.||||||||||||||.|||||.||.||||
Sbjct  741  ATATGAAATTTTCATGAAGTATGGTCGGCAGAGGTGGAAACTGAAGGGCAAAATAGAAGTGAATGGTAAACAGA  814

Query  740  GCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGTCACGGAGCTCAAA  813
            ||||||||||||.||||||.||.||.||||||||.||||||||||||||.||.|||||||||||.||.||||||
Sbjct  815  GCTGGGATGGAGCAGAAACCGTCTTCCTGCCCCTCATAGTTGGGTTCATTTCAATCAAGGTCACAGAACTCAAA  888

Query  814  GGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAGCCCGACCTCAGGT  887
            ||.||.||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||||||||.|||||
Sbjct  889  GGACTGGCGACTCACATCCTGGTAGGCAGTGTGACCTGCGAGACCAAAGAGCTGTTTGCAGCCCGACCCCAGGT  962

Query  888  AGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCATTTGACGTGG  961
            .||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  963  GGTGGCTGTTGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTATCCCTTTGACGTGG  1036

Query  962  AGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTCCATGTACAGCCAG  1035
            ||||||..|||.||||.||.|||.|||||||||||.||||.||.||.|||.|.||.||||||||||||||||||
Sbjct 1037  AGGACACAACCCCATCGTCGGGCCCTGGGAACAAGACAGCTGCTCTCCAGCGAAGGATGTCCATGTACAGCCAG  1110

Query 1036  GGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTT---------------------------------  1076
            ||.|||||.|||||.||.||||||||||||||.||||||||                                 
Sbjct 1111  GGCACCCCAGAAACACCTACCTTCAAAGACCAGTCCTTCTTTAGATGGTTGCGGCTGTCTGTCTTGAGTGCCTT  1184

Query 1077  --------------------------------------------------------------------------  1076
                                                                                      
Sbjct 1185  GCGAGACACTTTCTTTGCCACGTTGCACCACAACCACTCTGTCGGTGACCTGCCTTCCCTCAGCCTGAACCCCA  1258

Query 1077  -------------------TTCAAATCTACCTGATGACATCTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATG  1131
                               |||||||||.||.||||||||||||||.|.|||||||||.||.||||||||||.|
Sbjct 1259  AGGCCCTGCTAGAATTCTATTCAAATCTGCCAGATGACATCTTTGAGAGTGGAAAGGCTGCAGAGGAGAAAAGG  1332

Query 1132  CCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGACTGCGCCCTCACCTCCCACTCAACAGGCTCCCCTTC  1205
            ||||||||.|||||||||||||||||||...|.||.|||||.|.|.||||||||..||||.|...||||||.||
Sbjct 1333  CCACTGTCCCTCAGCTTCAGTGACCTGCAGGATGGAGACTGTGTCTTCACCTCCAGCTCAGCCACCTCCCCCTC  1406

Query 1206  CA------ACTCAACAAATCCAGAAATTACCATCACCCCTGCGGAGTTTAACCTCAGCAGCTTGGCCTCCCAGA  1273
            ||      |||||.|..|||||||.||||||||||||||.||.|||.|||.||.|||||||.||.||||.||.|
Sbjct 1407  CAGTTCACACTCAGCCCATCCAGAGATTACCATCACCCCCGCAGAGCTTACCCACAGCAGCCTGTCCTCACAAA  1480

Query 1274  ATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCCTGGGAGAAGGCCAAGAGCCAAAGTCACAC  1347
            |||||||.|..||.||||.|||||||||.|||||||||||.|||.||||.||.|.|||.|||||.|||||.|||
Sbjct 1481  ATGAGGGCACCGAGGACAGCAGCTCAGCGTCTTCCAGGAATTCCTTGGGTGAGGACCATGAGCCCAAGTCCCAC  1554

Query 1348  CTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCCCCATCTGAGGCTTGCCGCCGACAGTCCTC  1421
            | .||.|||  .||..|.|..||||||.|.||.||.|            .||.||||        |||      
Sbjct 1555  C-CAAAGAG--TGATACGGTAGAGCCCGGGAAGCCGG------------GTGTGGCT--------ACA------  1599

Query 1422  AGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGAAGCACTTCTGCAAGAGTCTGAGGAGGCCT  1495
            |||| ||||..|.|||..||||||.||.||||.|..|||.||.||.||.||.|||||.||.||.||.|||||||
Sbjct 1600  AGGT-CTGGTACCGAGAGCCTGTTTCTGGAGAGTAGTGTGGCCGAGGCTCTCCTGCAGGAATCGGATGAGGCCT  1672

Query 1496  CTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCACAAAGCAGCTGGTCAAGAGGCTCACATCT  1569
            |||||||||||||.||||||||||||||||..||||||||||||||||||||.|||||.|||||||||||.||.
Sbjct 1673  CTGAGCTCAAGCCCGTGGAACTGGACACTTTTGAAGGAAACATCACAAAGCAACTGGTGAAGAGGCTCACCTCG  1746

Query 1570  GCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCTGTTGGTGGAGAATCTGAAGGCT-GCAGAT  1642
            ||.||||.|||..|..|.||.||||.|||..|||.|||.||.|||||||||.|.||.|||| ||||| ||.|.|
Sbjct 1747  GCTGAGGGGCCCGTCACTACTGACAAGCTTTTCTTTGAAGGCTCTGTTGGTAGCGAGTCTG-AGGCTGGCCGGT  1819

Query 1643  CCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACTTGCATTAGAACCACATAAAGAGCAGTAT  1716
            |||||||.|||||.|||.|.||.|||||.||.|||||.||.||.|||||||||||.|||||.||..|||||||.
Sbjct 1820  CCTTTCTGGATGGCAGCCTGGAAGATGCCTTCAATGGACTCTTCCTTGCATTAGACCCACACAAGAAGCAGTAC  1893

Query 1717  AAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATATTCTAAAA---AAG--------------  1773
            ||||||||.||||||||||||||||||||||...|.|||||.|||.||||.|||   |||              
Sbjct 1894  AAAGAGTTCCAGGATCTGAACCAAGAAGTCACTCACTTGGATGATGTTCTCAAATGCAAGCCGGCTGGCAGCCG  1967

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 1968  CAGCAGGTCTTCCAGCCTAAGTCTGACGGTTGAGAGTGCTTTAGAAAGCTTTGATTTCCTCAACACCTCTGACT  2041

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2042  TTGACGAAGAGGAAGAGGATGGCGATGACGTCTGCCACGTTGGAGGAGGCGCAGACTCCGTGTTTTCAGATACT  2115

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2116  GAGACTGAGAAGAGTGGTTACAGGTCAGTTCACCCGGAAGCCAGGGGTCACCTTAGCGAGGCTCTGACTGAAGA  2189

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2190  CACAGGTGTAGGCACCAGTGTGGCAGGAAGCCCGCTCCCACTCACCACAGGAAATGAGAGCCTGGACATCACCA  2263

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2264  TAGTCAAACATCTACAATACTGCACCCAGCTCATCCAGCAAATCGTCTTCTCTAGCAAAACCCCCTTTGTGGCA  2337

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2338  AGAAGTCTCTTGGAGAAGCTGTCGAGGCAGGTCCTTGTGATGCAGAAGCTGGCAGCCGTGAGTGACGAGAACCT  2411

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2412  CGGGAACATCACCTCTGTGGTGGAAGCCATACCAGAATTTCACAAAAAGCTCTCCTTGCTGGCCTTCTGGACCA  2485

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2486  AATGCTGCAGCCCCAGCGGGGTCTACCACAGCTCCGCTGCCCGCCTCATCAAGCAGCTGGAGGCCAGCTTCGCC  2559

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2560  AGAAGCATCAACAAAGACTATCCAGGACTGGCAGAGCCAGTGTTTAGAACCCTGGTGTCCCAAATCCTGGACCG  2633

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2634  AGCTGAACCTCTCCTTTCCTCCAGCCTCTCGTCGGAAGTCATCACTGTCTTCCAGTACTACAGCTTCTTCACCA  2707

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2708  GCCACGGTGTGAGTGACCTGGAGACTTACCTGGGCCAGCTAACCAGGCAAGTTGCCATGGTTCAGACTCTGCAG  2781

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2782  TCACTGAGAGATGAGAAACTGCTGCAGACTATGAGCGACCTTGCACCCAGCAACCTCCCCGCTCAACAGGAAGT  2855

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2856  CCTCAGGACGCTGGCCCTGCTGCTCACCAGGGATGACAATGAGGTCAGCGAAGCTGTGACACTCTACTTGGCAG  2929

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2930  CAGCCTCCAAAAATGAGCACTTCAGAGAAAAGGCCTTGCTCTATTATTGCGAAGCACTAACGAAGGCCAATCTC  3003

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3004  CAGCTACAGAAGGCAGCATGTCTGGCCCTAAAGAGCCTGGAGGCCACCGAAAGCATTAAAATGCTAGTGACGTT  3077

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3078  GTGTCAGTCTGACACTGAAGAAATCAGAACCGTGGCCTCGGAAACCCTCCTCTCTCTTGGAGAAGACGGGCGAC  3151

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3152  TGGCGTACGAGCAATTAGACAAATTCCCTCGAGATTGTGTTAAAGTGGGAGGTCGTCATGGAACCGAAGTTGCC  3225

Query 1774  ---------  1773
                     
Sbjct 3226  ACAGCCTTT  3234

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