Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07481
Subject:
XR_001743760.1
Aligned Length:
5422
Identities:
1772
Gaps:
3649

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGCTCCTCTGACGCGAGGGCAGACACAGGAGCCCGGTGATCGTCTCTGCTTGAATAAATTACCGCCCCATCAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTCATGCATAAAACATGGCACAGGAGGCTAGGGCAGCCCAGCACAGCAGCTGCCTTCGGGCCAGTCGGAAGTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGGGAAGGAAAGGCAAGGCAAGTTACAAGATAAAAGAAGTCAACGGAAGCCTCAAATACTCTTTTTTTTTTTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTAAGAAAAGAACAAAAAGGGGGGGGTTAAGTTTTCTTTTTCATTTTTATACGTCTGGACTTAACTTCCAGGAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCTGCAAGACCCTTTTGTTCCTTTGCCATGAGCAGGTTTTAGGCCGCTCTGTTGGGACCATGGTGTTACCTTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCGATTACACTGGATCAGAAACAGGCCATGGAGGGACAGGATCCGGAGGCGCCAGCTCAACCGACTACCGACCA  444

Query    1  --------------ATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAG  60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACTCCCGGAAATCATGTTGGTAGGATCCCAGTCTTTTTCGCCTGGAGGGCCCAATGGGATCATTAGAAGCCAG  518

Query   61  TCCTTTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCT  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCCTTTGCGGGTTTCAGCGGCCTCCAGGAAAGGCGATCCAGGTGTAACTCCTTCATTGAAAATTCCTCCGCTCT  592

Query  135  CAAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTC  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGCCACAAAAACAACAATCCCCCCAAAGAGCCTC  666

Query  209  AGCCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACG  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGCCTAAAAGGGTGGAAGAAGTCTACAGGGCCTTGAAAAATGGACTTGATGAATATCTGGAGGTTCACCAGACG  740

Query  283  GAGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGA  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAGCTGGACAAGTTGACAGCTCAGTTAAAAGATATGAAAAGAAACTCTCGCCTGGGTGTACTGTATGACCTAGA  814

Query  357  CAAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATG  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAAGCAAATTAAAACAATTGAAAGATACATGAGACGCCTGGAGTTTCATATAAGTAAGGTAGATGAACTCTATG  888

Query  431  AAGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCC  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGCTTATTGTATCCAGCGACGCCTCCAGGATGGTGCCAGCAAAATGAAGCAAGCCTTCGCAACATCCCCTGCC  962

Query  505  AGCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCAT  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGCAAAGCTGCCCGGGAGAGTCTGACAGAGATCAATCGGAGCTTCAAGGAGTACACAGAGAATATGTGCACCAT  1036

Query  579  TGAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCT  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGAAGTGGAGCTAGAGAATCTGCTGGGAGAATTCTCCATCAAGATGAAAGGTCTGGCTGGCTTTGCACGCCTCT  1110

Query  653  GTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTA  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTCCTGGAGATCAATATGAAATTTTCATGAAGTATGGCCGGCAGCGGTGGAAACTGAAAGGCAAAATAGAAGTA  1184

Query  727  AATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGT  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AATGGCAAGCAGAGCTGGGATGGAGAAGAAACAGTTTTTCTGCCCCTGATAGTTGGGTTCATCTCCATCAAGGT  1258

Query  801  CACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAG  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CACGGAGCTCAAAGGGCTAGCAACTCACATCCTGGTAGGTAGCGTGACCTGTGAGACCAAAGAGCTGTTTGCAG  1332

Query  875  CCCGACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTAT  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCGACCTCAGGTAGTGGCTGTCGACATCAATGACCTTGGTACCATCAAACTGAACCTGGAAATCACCTGGTAT  1406

Query  949  CCATTTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTC  1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CCATTTGACGTGGAGGACATGACCGCATCCTCAGGCGCTGGGAACAAGGCAGCAGCCCTTCAGAGGAGAATGTC  1480

Query 1023  CATGTACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACA  1096
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CATGTACAGCCAGGGTACCCCGGAAACGCCCACCTTCAAAGACCACTCCTTCTTTTCAAATCTACCTGATGACA  1554

Query 1097  TCTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGAC  1170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TCTTTGAAAATGGAAAGGCAGCCGAGGAGAAAATGCCACTGTCGCTCAGCTTCAGTGACCTGCCCAACGGGGAC  1628

Query 1171  TGCGCCCTCACCTCCCACTCAACAGGCTCCCCTTCCAACTCAACAAATCCAGAAATTACCATCACCCCTGCGGA  1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGCGCCCTCACCTCCCACTCAACAGGCTCCCCTTCCAACTCAACAAATCCAGAAATTACCATCACCCCTGCGGA  1702

Query 1245  GTTTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCC  1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  GTTTAACCTCAGCAGCTTGGCCTCCCAGAATGAGGGTATGGATGACACCAGCTCAGCATCTTCCAGGAACTCCC  1776

Query 1319  TGGGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCC  1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TGGGAGAAGGCCAAGAGCCAAAGTCACACCTGAAGGAGGAAGACCCAGAGGAGCCCAGAAAACCTGCCTCGGCC  1850

Query 1393  CCATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGA  1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CCATCTGAGGCTTGCCGCCGACAGTCCTCAGGTGCTGGGGCTGAGCACCTGTTCCTTGAGAATGATGTTGCAGA  1924

Query 1467  AGCACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCA  1540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGCACTTCTGCAAGAGTCTGAGGAGGCCTCTGAGCTCAAGCCTGTGGAACTGGACACTTCGGAAGGAAACATCA  1998

Query 1541  CAAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCT  1614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CAAAGCAGCTGGTCAAGAGGCTCACATCTGCAGAGGTGCCAATGGCCACAGACAGGCTGCTCTCTGAGGGTTCT  2072

Query 1615  GTTGGTGGAGAATCTGAAGGCTGCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACT  1688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GTTGGTGGAGAATCTGAAGGCTGCAGATCCTTTCTAGATGGAAGCTTAGAGGATGCTTTTAATGGGCTTTTACT  2146

Query 1689  TGCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGANGATA  1762
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2147  TGCATTAGAACCACATAAAGAGCAGTATAAAGAGTTTCAGGATCTGAACCAAGAAGTCATGAATTTGGATGATA  2220

Query 1763  TTCTAAAA--------------------AAG-------------------------------------------  1773
            ||||||||                    |||                                           
Sbjct 2221  TTCTAAAATTACAGGTCGGTTCACCCAGAAGCCAGGGGGCATCTCAGTGAAGCGCTCACTGAAGACACAGGAGT  2294

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2295  TGGGACCAGTGTGGCAGGAAGTCCTCTCCCACTGACCACAGGCAACGAGAGCCTGGACATCACCATCGTCAGGC  2368

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2369  ACCTCCAGTACTGCACCCAACTCGTGCAGCAAATTGTTTTCTCAAGCAAAACCCCATTTGTGGCAAGAAGTCTC  2442

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2443  TTAGAGAAGCTTTCTAGGCAGATCCAAGTGATGGAGAAACTCGCAGCTGTCAGTGATGAGAACATAGGAAATAT  2516

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2517  CAGTTCTGTTGTGGAAGCCATACCAGAATTTCACAAAAAGCTGTCTTTGCTGTCATTCTGGACCAAGTGCTGCA  2590

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2591  GCCCTGTTGGTGTCTACCACAGCCCAGCGGACAGAGTGATGAAGCAGCTGGAGGCCAGCTTTGCCAGAACTGTC  2664

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2665  AACAAAGAATATCCAGGACTTGCAGACCCAGTGTTTCGAACCCTGGTGTCCCAAATTCTGGACCGGGCTGAGCC  2738

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2739  TCTGCTTTCCTCCAGCCTGTCCTCGGAAGTCGTCACTGTTTTCCAGTATTACAGTTACTTCACCAGCCACGGCG  2812

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2813  TCAGTGACCTGGAGAGTTACCTGAGCCAGCTGGCCAGGCAAGTTTCCATGGTTCAGACTCTGCAATCACTAAGA  2886

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2887  GATGAAAAACTGCTACAAACCATGAGTGACCTTGCTCCCAGCAACCTCCTGGCCCAGCAGGAAGTACTCAGGAC  2960

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 2961  TCTGGCTCTGCTATTAACCAGAGAGGACAACGAAGTTAGTGAGGCTGTGACGCTTTACTTGGCAGCAGCCTCCA  3034

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3035  AAAATCAGCATTTCAGGGAAAAGGCCTTGCTCTATTACTGTGAAGCACTAACAAAGACAAACCTCCAGCTCCAG  3108

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3109  AAAGCAGCTTGCCTGGCTCTGAAAATCCTTGAGGCTACTGAAAGCATTAAAATGCTGGTGACATTGTGTCAATC  3182

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3183  TGATACTGAAGAAATCAGAAATGTGGCCTCAGAAACCCTCTTGTCTCTGGGAGAAGATGGGCGGCTGGCATATG  3256

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3257  AACAATTGGACAAATTTCCTCGAGACTGTGTTAAAGTCGGAGGTCGTCATGGAACTGAAGTTGCCACAGCCTTT  3330

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3331  TAATTACAGGTTAACTGCCTAACAGCTGTCTTAATATCTGGCCCTTTTCATCAGGATGGTGCTGTGGTTTGGGC  3404

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3405  TGGAAATTGTTTAGAGCCTGAGAGACACGACAACTGAAATAAAAATGTAGGCCAGGTGCAGTGGCTCATGCCTG  3478

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3479  TAATCCCAGTACTTTGGGAGGCCAACGCAGGAGAATTGCTTAAGCCCAGGAGGTTCAAGACCAACCTGGGCAAC  3552

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3553  ATAGCAAGGCCCTGTCTCTACAAAAAAAATAGTTTAATTAGTCAGGCGTGGTGGCATGCACCTGTAGTCCCAGC  3626

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3627  TACTTGGGAGGCTAAGGTGGGAGGATTGCTTGAGCCCAGAAGATTCAGGCTGCAGTGAGCCATAATTGCCCCAC  3700

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3701  TGCACTCCAGACTGGGTGACAGAGCAAAACCCTGTCTCAAAAAACAAAACAACAACAACAACTAAAAAAACATG  3774

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3775  TTATAGAAAGAATTCAGAGTCTCGTTTCACAGTACCTATCTACTTTTCCTTTGGCCAATATAGAATAGGGCTAT  3848

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3849  GGTATAATTCAAATATATTACATCGTCGATTGTGTCTAATAATACTCAGTGAAAGAGTCCATCTTATCTTAATA  3922

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3923  TGTATGAAATTTAAAAATAGCCATCTTTGTACTTTTTTGCAAGTTTCTCTATAAGCTTGAAATAGTCATGTGAT  3996

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 3997  ACTTCGACAAACATCATATGCCTTGCAGTTTTTCTCGGTCGTGTTCTCAGGGTTGAGTAGTCCCCTTAGCTACC  4070

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4071  TAACTTTACTTTCAATACAAAGCACAAAAAAGAATATCTTCAAATAAAAGTTTGCCTGCAGAACCTGGCAAAAT  4144

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4145  GACCCATTAGGAGAGTTTAGATGTTTTAATTTTATGTGCTCCCAGCTACTCTGGAGTCTGAGGTGGGAGGATCA  4218

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4219  CTTGAGGCAGAGGTTGCAGTAAGCTGAGATTACACTACTGCACTCCAGCCCATGTGACAGAGGAATGAGAGCCA  4292

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4293  GTCTCAAAAAAAAAAACAAAAAACTCCCATAATTTATTTTGTTTCTTTTCCCCATCCTGAAAATTCCCAAATCA  4366

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4367  TGTTTCCATTATGGAAAAATGATAAGTAAATGACTAAGAACTACATTAAGATTATGCCTATACACTTAAACAAA  4440

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4441  AAACTCAAAGCTTATGCTTTTTTTTTTTTAATTAATGAGAGCTATTTTTTATGATATTCTTACCATAGGGGTGT  4514

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4515  TTTGCTGCTAAGACAAATCAAAACCAAAAGCTGTAGATTCACAAACCTGTGATGCTCTTTGAGGTGGAGGAACC  4588

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4589  TAGAAGTCAGAGAAATCCTAATGGAGTAGGAGTGGAGGAACATTTAAAGTGGTCCCTCCTTCTGTAAAAATGAC  4662

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4663  CGTGGGATTAGAAAGAAGGACATCCTGAGGGGTGGTTACTGCCCCCAGGGAAATCACTCACTGGTAGGATTCCC  4736

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4737  TGGCCAAATAGTTCAAACATCAGGTCCCATTATTGCTTCAGTATCAGAGATGCAAGTTCATTAAGCAAAGTACA  4810

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4811  AGACCATTCAGTAGCTCTTATTAAAATATCTTTTCTTCCTCTAAAGAGTGTACAAGGTGGGGTATGCCAAGGTA  4884

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4885  TCAAAACAATATATGTGAGTGTAATTTAAACTGTGGAATATCAACTGTACTATGGACGTGTTTGTATCATTTAG  4958

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 4959  ATGTCATTTTAAATATTTACATTTTAGCAAGACTTTTAAAAAGGACTCATTTCATTTCAAAGTGCAAATTGTTT  5032

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 5033  GCCAGGCTTCTGGCAAATGGTTCTTTCAACTGTGAACTTATCGTGTACATATCTGTATATTTATAAATATTATA  5106

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 5107  TATATTCATACATCCTTCACTTTAAAGGTACATTGTACAGTCTGTAGTTAGGAGGTATAGCCTATAGCTTATGT  5180

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 5181  TAAATGGTTGAAATGGTTCTTTTTATAGAAAGTCAAACACAGATGTTACAGGATTTTGTGTTTGGTTTGTCATT  5254

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 5255  TTTTTATTTTTTATTTTGACTATTGCATGAGTAATTAATTCCAGATCTTTTGTATTCACTTCTGTATTTTATGT  5328

Query 1774  --------------------------------------------------------------------------  1773
                                                                                      
Sbjct 5329  TTGGTTGAGGGGTGCTTTTAGTTGTGTGGCATTTGTATTCATTGATCTTTCAGTCATGTAAGTTAAAATAAAAA  5402

Query 1774  --------------------  1773
                                
Sbjct 5403  TTATTTTTGAATTACTAGCA  5422

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