Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07529
Subject:
XM_006496821.3
Aligned Length:
1458
Identities:
733
Gaps:
645

Alignment

Query    1  ATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGGGAGAATATATAAAAAACTGGAGGCCAAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CCCTCAACAACTTTTCAGTGGCAAAATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAGGGAAGAATGGAC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGGAGAGAATGAATTGTAGTCCAACTTCAC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAGACAATGAATGATTTT  444
                                                                              |||.|   
Sbjct    1  ------------------------------------------------------------------ATGGT---  5

Query  445  GACTATTTGAAACTAC-TAGGTAAAGGCACTTTTGG------GAA--AGTTATTTTGGTTCGAGAGAAGGCAAG  509
                        ||.| |||         ||.||||      |||  |.|       ..||||||         
Sbjct    6  ------------CTCCTTAG---------CTGTTGGCCCTCAGAAGCACT-------CGTCGAGA---------  42

Query  510  TGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGGATGAAGTGGCACACACTCTAA  583
            |..||.||||            .|||||             .|.||.|.||..|        ||||||.|||..
Sbjct   43  TCCAACATAC------------CTTCTG-------------GTGTTCCCAAACA--------CACACATTCTTC  83

Query  584  CTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTT-TAACATCCTTGAAATATTCCTTCCAG-ACAAAAG  655
            |  ||||                          |||||| ||  .|.||||..||.|  ||  ||| |||    
Sbjct   84  C--AAAG--------------------------CCTTTTATA--GTACTTGCCATGT--CT--CAGCACA----  119

Query  656  ACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAGCTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTC  729
                   ||||..|||..||     ||             |||||||||||||||||||||||||||.||||||
Sbjct  120  -------GTGTCATGTCCTG-----TG-------------GCTGTTTTTCCATTTGTCGAGAGAGCGAGTGTTC  168

Query  730  TCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGT  803
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||
Sbjct  169  TCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCTTTGGACTATCTACATTCTGGAAAGATTGT  242

Query  804  GTACCGTGATCTCAAGTTGGAGAATCTAATGCGGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTT  877
            |||||||||||||||||||||||||.|.||||..||.||.||||||||.|||||||||||.||||||||.||||
Sbjct  243  GTACCGTGATCTCAAGTTGGAGAATTTGATGCTAGATAAGGATGGCCATATAAAAATTACGGATTTTGGGCTTT  316

Query  878  GCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAGGTG  951
            |||||||||||||||||||||||||.|||||||||||||||||||||||.|||||.||.||||||||||||||.
Sbjct  317  GCAAAGAAGGGATCACAGATGCAGCTACCATGAAGACATTCTGTGGCACACCAGAGTACCTGGCACCAGAGGTA  390

Query  952  TTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGG  1025
            ||||||||||||||||||||||||||.||.||||||||||||.||||.||||||||||||||||||||||||||
Sbjct  391  TTAGAAGATAATGACTATGGCCGAGCCGTGGACTGGTGGGGCTTAGGTGTTGTCATGTATGAAATGATGTGTGG  464

Query 1026  GAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTC  1099
            .|||||.|||||||||||||||||.|||||||||||.||||||||||||.|||||||||||||||||||.||.|
Sbjct  465  AAGGTTGCCTTTCTACAACCAGGATCATGAGAAACTCTTTGAATTAATACTAATGGAAGACATTAAATTCCCCC  538

Query 1100  GAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACGCCTTGGTGGA  1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  GAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACGCCTTGGTGGA  612

Query 1174  GGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAA  1247
            ||.||||||||||||||||||||.|||||.||.|||||.||.|||||||||||||||||||||||||||||.||
Sbjct  613  GGGCCAGATGATGCAAAAGAAATCATGAGGCATAGTTTTTTTTCTGGAGTAAACTGGCAAGATGTATATGACAA  686

Query 1248  AAAGCTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAG  1321
            |||||||||||||||||||||.|||||||||||||||||.|||||.||..||||||||||||||||||||||||
Sbjct  687  AAAGCTTGTACCTCCTTTTAAGCCTCAAGTAACATCTGAAACAGACACCCGATATTTTGATGAAGAATTTACAG  760

Query 1322  CTCAGACTATTACAATAACACCACCTGAAAA--ATGTCAGCAATCAGATTGTGGCATGCTGGGTAACTGGAAAA  1393
            |||||||||||||||||||||||||||||||  |||.|        ||....||||||...||.|  ||||.||
Sbjct  761  CTCAGACTATTACAATAACACCACCTGAAAAGTATGAC--------GACGACGGCATGGACGGCA--TGGACAA  824

Query 1394  AA--------------------------------------------------  1395
            ..                                                  
Sbjct  825  CGAGCGGCGGCCACACTTCCCTCAGTTCTCCTACTCTGCAAGCGGACGGGAA  876

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