Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07568
Subject:
NM_001321533.2
Aligned Length:
3276
Identities:
2287
Gaps:
987

Alignment

Query    1  ATGATGGATTCTCCGAAGATTGGAAATGGTTTGCCAGTGATTGGACCAGGGACTGATATAGGGATATCTTCACT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCACATGGTGGGGTATTTGGGAAAAAATTTTGATTCAGCTAAAGTTCCATCAGATGAGTATTGCCCTGCTTGTA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GAGAGAAGGGAAAGTTAAAAGCCTTAAAGACTTACCGAATTAGTTTTCAAGAATCTATCTTTTTGTGTGAGGAT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CTGCAGTGCATCTATCCTTTGGGCTCTAAATCACTTAATAACCTAATTTCTCCTGATTTGGAAGAATGTCACAC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TCCACATAAGCCTCAGAAAAGGAAGAGCTTAGAAAGCAGCTATAAGGATTCACTTCTTTTAGCAAATTCCAAAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGACTAGAAATTATATTGCTATTGACGGTGGAAAAGTTTTGAACAGCAAACATAATGGAGAAGTATATGACGAA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ACCTCGTCAAACTTACCTGATAGTAGTGGTCAACAGAATCCAATTAGGACAGCTGATTCCTTGGAGCGGAATGA  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GATTTTGGAAGCTGATACTGTTGACATGGCTACTACAAAAGATCCTGCTACAGTTGATGTCTCTGGAACTGGCA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GACCTTCCCCTCAAAATGAAGGATGTACATCTAAGCTGGAAATGCCACTGGAGAGCAAATGTACATCATTTCCC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CAGGCTTTATGTGTCCAGTGGAAAAATGCTTATGCTCTCTGTTGGTTAGACTGTATCCTGTCAGCTTTGGTGCA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  CTCGGAAGAGTTAAAGAACACCGTGACTGGACTGTGCTCGAAGGAGGAATCTATATTCTGGCGGTTGCTTACAA  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AATATAATCAAGCAAATACACTTCTATATACCAGTCAATTGAGTGGTGTTAAAGATGGAGATTGTAAAAAACTT  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ACCTCAGAAATATTTGCAGAGATAGAGACCTGTCTGAATGAAGTTAGAGATGAAATTTTTATTAGCCTTCAGCC  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CCAGCTTAGATGCACATTAGGTGATATGGAAAGCCCTGTGTTTGCATTTCCCCTGCTCTTAAAACTAGAAACCC  1036
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  -------------------------ATGGAAAGCCCTGTGTTTGCATTTCCCCTGCTCTTAAAACTAGAAACCC  49

Query 1037  ACATTGAAAAGCTCTTCCTATATTCTTTTTCTTGGGACTTTGAATGTTCGCAGTGTGGACACCAATATCAAAAC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   50  ACATTGAAAAGCTCTTCCTATATTCTTTTTCTTGGGACTTTGAATGTTCGCAGTGTGGACACCAATATCAAAAC  123

Query 1111  AGGCATATGAAGAGTCTGGTCACCTTTACAAATGTCATCCCTGAGTGGCACCCACTTAATGCTGCCCATTTTGG  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  124  AGGCATATGAAGAGTCTGGTCACCTTTACAAATGTCATCCCTGAGTGGCACCCACTTAATGCTGCCCATTTTGG  197

Query 1185  TCCATGTAACAATTGCAACAGTAAATCACAAATAAGAAAAATGGTATTAGAAAAAGTATCTCCCATATTCATGT  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  198  TCCATGTAACAATTGCAACAGTAAATCACAAATAAGAAAAATGGTATTAGAAAAAGTATCTCCCATATTCATGT  271

Query 1259  TGCACTTTGTAGAAGGCTTACCACAGAATGACTTGCAGCACTATGCATTTCATTTTGAAGGCTGTCTTTATCAG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  TGCACTTTGTAGAAGGCTTACCACAGAATGACTTGCAGCACTATGCATTTCATTTTGAAGGCTGTCTTTATCAG  345

Query 1333  ATAACTTCTGTAATTCAGTATCGAGCAAATAATCATTTTATAACATGGATTTTAGATGCTGATGGAAGTTGGCT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  ATAACTTCTGTAATTCAGTATCGAGCAAATAATCATTTTATAACATGGATTTTAGATGCTGATGGAAGTTGGCT  419

Query 1407  GGAATGTGATGACTTAAAAGGCCCATGTTCTGAAAGGCACAAGAAATTTGAAGTTCCTGCTTCAGAGATACATA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  GGAATGTGATGACTTAAAAGGCCCATGTTCTGAAAGGCACAAGAAATTTGAAGTTCCTGCTTCAGAGATACATA  493

Query 1481  TTGTTATTTGGGAAAGAAAAATATCCCAAGTGACAGATAAAGAAGCTGCCTGCCTTCCACTTAAAAAGACTAAT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  494  TTGTTATTTGGGAAAGAAAAATATCCCAAGTGACAGATAAAGAAGCTGCCTGCCTTCCACTTAAAAAGACTAAT  567

Query 1555  GACCAACACGCTCTCAGTAATGAGAAACCAGTATCTTCAACATCGTGTTCTGTGGGTGATGCTGCCTCAGCTGA  1628
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  568  GACCAACACGCTCTCAGTAATGAGAAACCAGTATCTTTAACATCGTGTTCTGTGGGTGATGCTGCCTCAGCTGA  641

Query 1629  AACAGCCTCAGTAACTCACCCTAAAGATATATCAGTTGCCCCTCGTACTCTTTCACAGGACACAGCTGTAACTC  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  AACAGCCTCAGTAACTCACCCTAAAGATATATCAGTTGCCCCTCGTACTCTTTCACAGGACACAGCTGTAACTC  715

Query 1703  ATGGAGATCATTTACTTTCAGGTCCAAAAGGTTTGGTTGACAATATTTTACCTCTGACACTTGAAGAAACTATC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  ATGGAGATCATTTACTTTCAGGTCCAAAAGGTTTGGTTGACAATATTTTACCTCTGACACTTGAAGAAACTATC  789

Query 1777  CAGAAAACAGCCTCAGTTTCACAGTTAAATTCTGAAGCTTTCCTGTTAGAAAATAAACCTGTAGCAGAAAATAC  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  790  CAGAAAACAGCCTCAGTTTCACAGTTAAATTCTGAAGCTTTCCTGTTAGAAAATAAACCTGTAGCAGAAAATAC  863

Query 1851  AGGAATTCTCAAAACCAATACTTTGCTATCACAAGAATCACTAATGGCTTCTTCAGTATCAGCTCCATGTAATG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  864  AGGAATTCTCAAAACCAATACTTTGCTATCACAAGAATCACTAATGGCTTCTTCAGTATCAGCTCCATGTAATG  937

Query 1925  AAAAGCTTATTCAAGACCAATTTGTGGACATAAGTTTTCCATCCCAAGTTGTAAATACAAACATGCAGTCAGTA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  938  AAAAGCTTATTCAAGACCAATTTGTGGACATAAGTTTTCCATCCCAAGTTGTAAATACAAACATGCAGTCAGTA  1011

Query 1999  CAGCTGAATACAGAAGATACTGTAAATACTAAATCTGTGAATAATACTGATGCTACTGGTCTTATACAGGGAGT  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012  CAGCTGAATACAGAAGATACTGTAAATACTAAATCTGTGAATAATACTGATGCTACTGGTCTTATACAGGGAGT  1085

Query 2073  GAAGTCAGTAGAAATTGAGAAGGACGCTCAGTTAAAACAATTCCTTACACCAAAAACTGAACAATTAAAACCAG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086  GAAGTCAGTAGAAATTGAGAAGGACGCTCAGTTAAAACAATTCCTTACACCAAAAACTGAACAATTAAAACCAG  1159

Query 2147  AACGTGTCACATCTCAGGTATCTAATTTGAAGAAAAAAGAAACTACAGCAGATTCTCAAACCACAACATCTAAG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160  AACGTGTCACATCTCAGGTATCTAATTTGAAGAAAAAAGAAACTACAGCAGATTCTCAAACCACAACATCTAAG  1233

Query 2221  TCATTACAGAATCAGTCTCTGAAAGAAAATCAGAAGAAGCCATTTGTGGGAAGTTGGGTTAAAGGCTTAATAAG  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234  TCATTACAGAATCAGTCTCTGAAAGAAAATCAGAAGAAGCCATTTGTGGGAAGTTGGGTTAAAGGCTTAATAAG  1307

Query 2295  CAGGGGTGCTTCTTTTATGCCACTCTGTGTTTCAGCTCATAATAGAAACACTATAACTGATTTACAACCTTCAG  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308  CAGGGGTGCTTCTTTTATGCCACTCTGTGTTTCAGCTCATAATAGAAACACTATAACTGATTTACAACCTTCAG  1381

Query 2369  TTAAAGGGGTAAATAATTTTGGTGGCTTTAAAACTAAAGGTATAAACCAGAAGGCCAGCCACGTATCCAAGAAA  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382  TTAAAGGGGTAAATAATTTTGGTGGCTTTAAAACTAAAGGTATAAACCAGAAGGCCAGCCACGTATCCAAGAAA  1455

Query 2443  GCTCGTAAGAGTGCAAGTAAGCCTCCTCCCATCAGTAAGCCACCAGCAGGCCCTCCATCGTCTAATGGCACAGC  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456  GCTCGTAAGAGTGCAAGTAAGCCTCCTCCCATCAGTAAGCCACCAGCAGGCCCTCCATCGTCTAATGGCACAGC  1529

Query 2517  TGCCCACCCACATGCTCATGCTGCTTCAGAAGTTTTGGAAAAGTCTGGAAGCACCTCATGTGGAGCTCAACTCA  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530  TGCCCACCCACATGCTCATGCTGCTTCAGAAGTTTTGGAAAAGTCTGGAAGCACCTCATGTGGAGCTCAACTCA  1603

Query 2591  ACCACAGTTCTTATGGGAATGGTATTTCTTCAGCAAACCATGAAGACTTGGTGGAAGGTCAGATTCATAAACTT  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604  ACCACAGTTCTTATGGGAATGGTATTTCTTCAGCAAACCATGAAGACTTGGTGGAAGGTCAGATTCATAAACTT  1677

Query 2665  CGTCTAAAACTTCGTAAAAAGCTAAAGGCAGAAAAGAAGAAATTAGCTGCTCTTATGTCTTCCCCGCAAAGCAG  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678  CGTCTAAAACTTCGTAAAAAGCTAAAGGCAGAAAAGAAGAAATTAGCTGCTCTTATGTCTTCCCCGCAAAGCAG  1751

Query 2739  AACAGTTCGAAGTGAAAATCTAGAACAGGTGCCCCAGGATGGGTCTCCAAATGATTGTGAATCAATAGAGGACT  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752  AACAGTTCGAAGTGAAAATCTAGAACAGGTGCCCCAGGATGGGTCTCCAAATGATTGTGAATCAATAGAGGACT  1825

Query 2813  TGTTAAATGAGCTACCATATCCAATTGATATTGCCAATGAGTCTGCATGCACCACTGTTCCTGGTGTTTCCCTG  2886
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1826  TGTTAAATGAGCTACCATATCCAATTGATATTGCCAGTGAGTCTGCATGCACCACTGTTCCTGGTGTTTCCCTG  1899

Query 2887  TACAGTAGTCAAACTCATGAAGAAATTTTAGCGGAATTATTGTCTCCTACACCTGTTTCAACAGAGCTGTCAGA  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900  TACAGTAGTCAAACTCATGAAGAAATTTTAGCGGAATTATTGTCTCCTACACCTGTTTCAACAGAGCTGTCAGA  1973

Query 2961  AAATGGGGAAGGTGACTTTAGGTATTTGGGAATGGGAGATAGTCATATCCCACCACCAGTACCAAGTGAATTCA  3034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974  AAATGGGGAAGGTGACTTTAGGTATTTGGGAATGGGAGATAGTCATATCCCACCACCAGTACCAAGTGAATTCA  2047

Query 3035  ATGATGTTTCCCAGAACACACATCTGAGACAGGACCATAATTATTGTAGCCCCACCAAGAAAAATCCATGTGAA  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048  ATGATGTTTCCCAGAACACACATCTGAGACAGGACCATAATTATTGTAGCCCCACCAAGAAAAATCCATGTGAA  2121

Query 3109  GTTCAGCCAGACTCTCTGACAAATAATGCCTGCGTTAGAACATTAAACTTGGAGAGTCCGATGAAGACTGATAT  3182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122  GTTCAGCCAGACTCTCTGACAAATAATGCCTGCGTTAGAACATTAAACTTGGAGAGTCCGATGAAGACTGATAT  2195

Query 3183  TTTCGATGAGTTTTTTTCCTCCTCAGCATTAAATGCTTTAGCAAATGACACATTAGACCTACCTCATTTCGATG  3256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196  TTTCGATGAGTTTTTTTCCTCCTCAGCATTAAATGCTTTAGCAAATGACACATTAGACCTACCTCATTTCGATG  2269

Query 3257  AATATCTGTTTGAGAATTAT  3276
            ||||||||||||||||||||
Sbjct 2270  AATATCTGTTTGAGAATTAT  2289

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