Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07737
Subject:
NM_030096.2
Aligned Length:
1813
Identities:
1560
Gaps:
35

Alignment

Query    1  ATGGACGTCC-ACGATCTCTTTCGCCGGCTCGGCGCGGGGGCCAAATTCGACACGAGACGCTTCTCGGCAGACG  73
            ||||| .||| ||||.||.|||||||||||.||.||.||.|||||.||||||..||..||||||||.|||||||
Sbjct    1  ATGGA-TTCCTACGACCTGTTTCGCCGGCTTGGAGCCGGCGCCAAGTTCGACGTGAAGCGCTTCTCAGCAGACG  73

Query   74  CAGCTCGATTCCAGATAGGAAAAAGGAAATATGACTTTGATTCTTCGGAGGTGCTTCAGGGACTGGACTTTTTT  147
            |..|||||||||||.|||||||||||||||..||.|..||.||||.||||||.||..|||||||.|||||.||.
Sbjct   74  CTACTCGATTCCAGGTAGGAAAAAGGAAATTCGATTCCGAGTCTTTGGAGGTCCTGAAGGGACTAGACTTCTTC  147

Query  148  GGAAACAAGAAGTCTGTCCCAGGTGTGTGTGGAGCATCACAAACACATCAGAAGCCCCAAAATGGAGAGAAAAA  221
            ||||||||||||||.|||.|||.||..||||||||||..||||.|||.|||.||||||.|||||..|||||||.
Sbjct  148  GGAAACAAGAAGTCCGTCTCAGATGAATGTGGAGCATTGCAAATACACCAGGAGCCCCCAAATGAGGAGAAAAC  221

Query  222  AGAAGAGAGCCTAACTGAAAGGAAGAGGGAGCAGAGCAAGAAAAAAAGGAAGACGATGACTTCAGAAATTGCTT  295
            |.|||.|..|||....|||||||..|.|||||..|..||||||||.||.||||.|||||||||||||.||.||.
Sbjct  222  ACAAGGGGTCCTGTTGGAAAGGAGTAAGGAGCCCAAGAAGAAAAAGAGAAAGAAGATGACTTCAGAAGTTCCTG  295

Query  296  CCCAAGAA------GAAGGTGCTACTATACAGTGGATGTCATCTGTAGAAGCAAAGATTGAAGACAAAAAAGTT  363
            |.||||||      ||.||||   .|||.|||||||..||.|||||||||||||||.||.||||..|||||| |
Sbjct  296  CTCAAGAAGACTTTGACGGTG---GTATCCAGTGGACATCCTCTGTAGAAGCAAAGCTTCAAGATGAAAAAG-T  365

Query  364  CA---GAGAGA--AAGTAAACTAACTTCCGGAAAGTTGGAGAATCTCAGAAAAGAAAAGATAAACTTCTTGCGG  432
            ||   ||||||  ||||    |||||||.|||||||||||..||||||||||.||||||.|.||||||||.|||
Sbjct  366  CAGTGGAGAGAAGAAGT----TAACTTCAGGAAAGTTGGAACATCTCAGAAAGGAAAAGGTCAACTTCTTTCGG  435

Query  433  AATAAACACAAAATTCACGTCCAAGGAACCGATCTTCCTGACCCAATTGCTACATTTCAGCAACTTGACCAGGA  506
            ||.||.|||||.||.||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  AACAAGCACAAGATACATGTCCAAGGAACTGATCTTCCTGACCCAATTGCTACATTTCAGCAACTTGACCAGGA  509

Query  507  ATATAAAATCAATTCTCGACTACTTCAGAACATTCTAGATGCAGGTTTCCAAATGCCTACGCCAATCCAAATGC  580
            ||||||||||||||||.||.|.||.|||||.||||||||.|||||.||||||.||||.||.|||||.||.||||
Sbjct  510  ATATAAAATCAATTCTAGATTGCTCCAGAATATTCTAGACGCAGGCTTCCAAGTGCCCACACCAATTCAGATGC  583

Query  581  AAGCCATCCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCTCCAACTGGATCTGGAAAAACATTAGCT  654
            |||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||.||.||.
Sbjct  584  AAGCCATTCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCTCCAACCGGATCTGGGAAGACGTTGGCA  657

Query  655  TTTAGCATTCCTATTTTAATGCAGCTGAAACAACCCGCAAATAAAGGCTTCAGAGCCCTGATTATATCACCAAC  728
            ||||||||.||.|||||||||||||||||||||||..|||||||||||||.|||||||||.|||||||.|||||
Sbjct  658  TTTAGCATCCCCATTTTAATGCAGCTGAAACAACCAACAAATAAAGGCTTTAGAGCCCTGGTTATATCCCCAAC  731

Query  729  ACGAGAACTTGCCAGCCAGATTCACAGAGAGTTAATAAAAATTTCTGAGGGAACAGGATTCAGGATACACATGA  802
            .|||||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||||||||.|||||.||||
Sbjct  732  CCGAGAACTTGCAAGCCAGATTCACAGAGAATTAATTAAAATATCTGAGGGTACAGGATTCAGAATACATATGA  805

Query  803  TCCACAAAGCAGCAGTGGCAGCCAAGAAATTTGGACCTAAATCATCTAAAAAGTTTGATATTCTTGTGACTACT  876
            ||||||||||.|||.|.|||||.||||||||||||||||||||||||||.|||||||||||.||||||||||||
Sbjct  806  TCCACAAAGCTGCAATAGCAGCTAAGAAATTTGGACCTAAATCATCTAAGAAGTTTGATATCCTTGTGACTACT  879

Query  877  CCAAATCGACTAATCTATTTATTAAAGCAAGATCCCCCCGGAATCGACCTAGCAAGTGTTGAGTGGCTTGTAGT  950
            |||||||||||.|||||.||.||.|||||.|||||.||.||.||.||||||.|||.|||.||||||||.|||||
Sbjct  880  CCAAATCGACTGATCTACTTGTTGAAGCAGGATCCACCAGGGATTGACCTAACAAATGTCGAGTGGCTGGTAGT  953

Query  951  AGACGAATCAGATAAACTGTTTGAAGATGGCAAAACTGGGTTCAGAGACCAGCTGGCTTCCATTTTCCTGGCCT  1024
            |||.||||||||.|||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct  954  AGATGAATCAGACAAACTGTTTGAAGATGGCAAAACTGGGTTTAGAGAGCAGCTGGCTTCCATTTTCCTGGCCT  1027

Query 1025  GCACATCCCACAAGGTCCGAAGAGCTATGTTCAGTGCAACTTTTGCATATGATGTTGAACAGTGGTGCAAACTC  1098
            |||||||.|.|||||||.|||||||.||||||||.|||||||||||.||.||.|||||||||||||||||.|||
Sbjct 1028  GCACATCGCCCAAGGTCAGAAGAGCAATGTTCAGCGCAACTTTTGCGTACGACGTTGAACAGTGGTGCAAGCTC  1101

Query 1099  AACCTGGACAATGTCATCAGT----GTGTCCATTGGAGCAAGGAATTCTGCAGTAGAAACTGTAGAACAAGAGC  1168
            |||||||||||.|||    ||    |||||||||||||||||||||||||||||.||||||||.||||||||||
Sbjct 1102  AACCTGGACAACGTC----GTTTCCGTGTCCATTGGAGCAAGGAATTCTGCAGTCGAAACTGTTGAACAAGAGC  1171

Query 1169  TTCTCTTTGTTGGATCTGAGACCGGAAAACTTCTGGCCGTGAGAGAACTTGTTAAAAAGGGTTTCAATCCACCT  1242
            ||||||||||||||||||||||.|||||||||||||||.||||||||||||||||||||||||||||.||||||
Sbjct 1172  TTCTCTTTGTTGGATCTGAGACTGGAAAACTTCTGGCCATGAGAGAACTTGTTAAAAAGGGTTTCAAGCCACCT  1245

Query 1243  GTTCTTGTTTTTGTTCAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGTATTAATGT  1316
            |||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1246  GTTCTTGTTTTCGTTCAGTCCATTGAAAGAGCTAAAGAACTTTTCCATGAGCTCATATATGAAGGTATTAATGT  1319

Query 1317  GGATGTTATTCATGCAGAGAGAACACAACAACAGAGAGATAACACAGTCCACAGTTTCAGAGCAGGAAAAATCT  1390
            ||||||.|||||||||||.||||||||.||.|||.|||||||||||||||||||.|||||||||||||||||.|
Sbjct 1320  GGATGTCATTCATGCAGAAAGAACACAGCAGCAGCGAGATAACACAGTCCACAGCTTCAGAGCAGGAAAAATTT  1393

Query 1391  GGGTTCTGATTTGTACAGCCTTGCTAGCAAGAGGGATTGATTTTAAAGGTGTGAACTTGGTGATCAACTATGAC  1464
            |||||||.||||||||||||||.||.||||||||||||||.||||||||.||.|||.||||.|||||.|||||.
Sbjct 1394  GGGTTCTTATTTGTACAGCCTTACTTGCAAGAGGGATTGACTTTAAAGGCGTAAACCTGGTCATCAATTATGAT  1467

Query 1465  TTTCCAACTAGCTCAGTGGAATATATCCACAGGATAGGTCGAACTGGAAGAGCAGGGAATAAGGGAAAAGCAAT  1538
            |||||.||.|||||||||||.||.|||||.|||||||||||.|||||||||||||||||||.||||||.||..|
Sbjct 1468  TTTCCCACCAGCTCAGTGGAGTACATCCATAGGATAGGTCGGACTGGAAGAGCAGGGAATAGGGGAAAGGCTGT  1541

Query 1539  TACATTTTTCACTGAGGATGATAAGCCATTATTAAGAAGCGTTGCTAATGTTATACAGCAGGCTGGGTGTCCTG  1612
            |||||||||||||||.||||||||.||||||.|||||||.|||||.||||||||.|||||||||||.|||||||
Sbjct 1542  TACATTTTTCACTGAAGATGATAAACCATTACTAAGAAGTGTTGCCAATGTTATCCAGCAGGCTGGTTGTCCTG  1615

Query 1613  TACCAGAATACATAAAAGGTTTTCAGAAACTACTAAGCAAACAAAAGAAAAAGATGATTAAGAAACCATTGGAA  1686
            |.||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||.||.||||||
Sbjct 1616  TGCCCGAATACATAAAAGGTTTCCAGAAACTACTAAGCAAACAAAAGAAAAAAATGATTAAGAAGCCGTTGGAA  1689

Query 1687  AGGGAGAGCATTAGTACAACTCCAAAATGTTTCTTAGAAAAAGCTAAGGATAAACAGAAAAAGGTCACTGGTCA  1760
            ||||||||||||.|||||||||||||.|..||||||||..||||      |||||||||||||||..||||.||
Sbjct 1690  AGGGAGAGCATTTGTACAACTCCAAAGTACTTCTTAGAGCAAGC------TAAACAGAAAAAGGTTGCTGGCCA  1757

Query 1761  GAACAGCAAGAAGAAAGTAGCTCTTGAAGACAAAAGT  1797
            .||||||||||||||||.|.||||..||||.||||||
Sbjct 1758  AAACAGCAAGAAGAAAGAAACTCTCAAAGAGAAAAGT  1794

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