Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NM_001137674.3
Aligned Length:
1988
Identities:
1165
Gaps:
685

Alignment

Query    1  ------------------------------------------------ATGGCTCTTCCTCAGGGTCTAC-TGA  25
                                                            |||||||||||||||||.| || |||
Sbjct    1  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGAC-ACTTGA  73

Query   26  CATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATAC  99
            |.||.|||||||||||.||||||||||||..|||||||||||||||||||||||||.|.||||||.||.|||||
Sbjct   74  CTTTTAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGGACCCTACGCAGAGGGCTTTATAC  147

Query  100  AGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTT  173
            ||.|.|.|||||.|||||||.||.|||||||||...||..||||||.|||||||||||||||||||||||.|||
Sbjct  148  AGGGCCATGATGTTGGAGAACTACAGGAACCTGCATTCTGTGGATATCTCTTCCAAATGCATGATGAAGAAGTT  221

Query  174  CTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTG  247
            |||||||||||..|||||||||||||||||||   |||||||||||||..|||.|||||.||||||||||||||
Sbjct  222  CTCATCAACAGCGCAAGGCAATACAGAAGTGG---ACACAGGGACATTAGAAAGACATGAAAGTCATCACATTG  292

Query  248  GAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAAT  321
            |||||..||||||||||.||||||.||||||||||||||||||||.||||||.|||||||||.|..|||.||||
Sbjct  293  GAGATTTTTGCTTCCAGAAAATTGGGAAAGATATTCATGACTTTGAGTTTCAATGGCAAGAAGACAAAAGAAAT  366

Query  322  GGCCATGAAGC-ACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACAGAGCGACATGATCAAAGGCATGCT  393
            .|||||||||| ||| ||||||.||||||||||||||| || ||||.||.||..||.||||||.|||||||.||
Sbjct  367  AGCCATGAAGCAACT-ATGACACAAATCAAAAAGTTGACTG-GTAGCACCGACAGATATGATCGAAGGCATCCT  438

Query  394  GGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCC  467
            ||||||||.|||||.|||.||.|||||||||.||||||||||||||||||.||||||.|.|||||||||||..|
Sbjct  439  GGAAACAAGCCTATCAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTTCCTGAACTCCACATATTTCAGAC  512

Query  468  CGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTT  541
            |.||||||||.||||||||||||||||||||.|||||||||||||||.|||||||..|.|.||||||.||||||
Sbjct  513  CAAAGGGAAAGTTGGTAATCAAGTTGAGAAGTCTATCAACGATGCTTCCTCAGTTCTAACGTCCCAAAGAATTT  586

Query  542  CCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAA  615
            |.|.||||||.||||..|.||||||||||||.|||...|||||||||.||||.||.|||||||||||||.||||
Sbjct  587  CTTCTAGGCCCAAAATCCATATTTCTAATAACTATGAAAATAATTTCTTCCATTCATCATTACTCACACTAAAA  660

Query  616  CGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTT  689
            |.|||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||
Sbjct  661  CAGGAAGTACACATAAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTT  734

Query  690  AAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGA  763
            ||..|||||||||||||||.|||||||||..|||||.|||||||||||||||||.|||||||.||||.||||||
Sbjct  735  AAGGAAACATCAGATAATCTATTTAGGAGGGAAACAATATAAATGTGATGTATGTGGCAAGGTCTTTAATCAGA  808

Query  764  AGCGATACCTTGCATGC---CATAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACA  834
            |||||||||||||||||   ||||||||||||||||||                                    
Sbjct  809  AGCGATACCTTGCATGCCATCATAGATGTCACACTGGT------------------------------------  846

Query  835  TTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATG  908
                                                            ||||||||||||||||||||||||||
Sbjct  847  ------------------------------------------------GAGAAACCTTACAAGTGTAATGAATG  872

Query  909  TGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAAT  982
            ||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||
Sbjct  873  TGGCAAGGTTTTTAATCAACAATCAAACCTTGCAAGTCATCATAGACTTCATACTGGAGAGAAACCTTACAAAT  946

Query  983  GTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAA  1056
            ||||||||||||||||||||||.||||||||||||.|.|||||||||||||||||||||||.||||||||||||
Sbjct  947  GTGAAGAATGTGACAAAGTTTTTAGTCGCAAATCAAATCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAA  1020

Query 1057  CCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTGATTCACACCTGGCACAACATACTGTAATTCAC--  1128
            |||||||||||||||||||||||.|||||||||||.||||||||||||||..|||||||.|||..|||||||  
Sbjct 1021  CCATACAAATGTAAGGTTTGTGAAAAGGCTTTCAGGCGTGATTCACACCTCACACAACACACTAGAATTCACAC  1094

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 1095  TGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCAACACTTATTCACCATCAAG  1168

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 1169  CAATCCATGGTATAGGGAAACTTTATAAATGTAATGATTGTCACAAAGTCTTCAGTAATGCTACAACCATTGCA  1242

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 1243  AATCATTGGAGAATCCATAATGAAGAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTTTTAGACGTCGTTC  1316

Query 1129  ----------------------------ACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCG  1174
                                        |||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1317  ATATCTCGTAGTTCATTGGCGAACTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCC  1390

Query 1175  TTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGC  1248
            .|||.||||||.|.||||||||.|||||||..|||||||||||||||||||.|||||||||||||||.||||||
Sbjct 1391  ATCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1464

Query 1249  AAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAG--ACTTCATACTGGAGAGAAACCTTACAAGTGT  1320
            |||...||...||||||.|||..|||||.|..||||  .||  |.|||||||||||||||||||||||||||||
Sbjct 1465  AAGACCTTCCGTCACAATTCAGCCCTTGTAATTCAT--AAGGCAATTCATACTGGAGAGAAACCTTACAAGTGT  1536

Query 1321  AATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATC  1394
            |||||||||||||||||||||||||.|.||.|||.|||||.|||||||||||||||||||||||||.|||||.|
Sbjct 1537  AATGAATGTGGCAAGGTTTTTAATCAACAAGCAACCCTTGCACGTCATCATAGACTTCATACTGGAGAGAAACC  1610

Query 1395  T-------------------------------------------------------------------------  1395
            |                                                                         
Sbjct 1611  TTACAAATGTGAAGAATGTGACACAGTTTTCAGTCGCAAATCACACCATGAAACACATAAGAGAATTCATACTG  1684

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1685  GAGAGAAACCTTACAAATGTGATGATTTTGACGAGGCCTTCAGTCAAGCTTCATCTTATGCAAAACAAAGGAGA  1758

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1759  ATTCATATGGGAGAGAAACATCACAAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACATCGCATTAG  1832

Query 1396  ----------------------------------------------------------------  1395
                                                                            
Sbjct 1833  ACATCAGAGAATCCATACCGGACAGAAATCTTACAAATGTCATAAGCGTGGCAAGGTCTTCAGT  1896

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