Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NM_001161500.1
Aligned Length:
2121
Identities:
1203
Gaps:
732

Alignment

Query    1  ------------------------------------------------ATGGCTCTTCCTCAGGGTCTACTGAC  26
                                                            |||||||||||||||||.|...||||
Sbjct    1  ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACGCTTGAC  74

Query   27  ATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACA  100
            .|||.||||||||||.|||||||||||...||..|||||||||||||||.|||||.|.||||||.||.|.||||
Sbjct   75  TTTCCGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCACAGAGGGCTTTGTACA  148

Query  101  GAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTC  174
            |.||.||||||.|||||||.||.||||||||||...|..||||||.||||||||||||||||||||||..|.||
Sbjct  149  GGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAATGCATGATGAAGGAGGTC  222

Query  175  TCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGG  248
            |..||||||||.||||||||||||||||||.|||||||||||||||||||||.|||||.|||||||||||||||
Sbjct  223  TTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTGG  296

Query  249  AGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATG  322
            ||||..||||||||||||||||||||||||.|||||||||.|||.|||||||||.||||||.||||||.|||||
Sbjct  297  AGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATG  370

Query  323  GCCATGAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGG  395
            |||.||||||||.||||||||||||.|||||||||| || ||||.|||||.|.|||||||||.|||||||||||
Sbjct  371  GCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTG-GTAGCACAGACCAACATGATCACAGGCATGCTGG  443

Query  396  AAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCG  469
            ||||||.|||||||||.||.|||||||||||||||||.||||.||||||||||||.|.|||||||||||...|.
Sbjct  444  AAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCA  517

Query  470  AAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCC  543
            ||||..||||||||||||||.||||||||.|||..||.||||||..||||||||||.|||.||||.||||||||
Sbjct  518  AAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCTCAGTTTCAACATTCCAAAGAATTTCC  591

Query  544  TGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACG  617
            ||||||||..||||.|..|||||||||||.|||.||||||||..|||..|.||||||||||||.|||||||||.
Sbjct  592  TGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACA  665

Query  618  GGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAA  691
            |||||||||||..||||||||||||||||||.|||||.||||||||||||||||||||.|||||||||||||||
Sbjct  666  GGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATAAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAA  739

Query  692  AAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAG  765
            ..|||||.||||||..||||||||||||||||||.|||||||||||||||||.||||||..||||.||||..||
Sbjct  740  GGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACGAG  813

Query  766  CGATACCTTGCATGCC---ATAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATT  836
            |.||||||||||||||   |||||||||||||||.||||||.||||||||||||||.||||||||||||||.||
Sbjct  814  CAATACCTTGCATGCCATGATAGATGTCACACTGTTGAGAAACCTTACAAGTGTAAAGAGTGTGGCAAGACCTT  887

Query  837  CA------------------------------------------------------------------------  838
            ||                                                                        
Sbjct  888  CAGTCAGGAGTCATCCCTTACCTGCCATCGTAGACTTCATACTGGAGTAAAACGTTACAATTGTAATGAGTGTG  961

Query  839  ------------GTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGT  900
                        ||||.|||||||||||..||.||.|.|||||||||.||||||||||.||.||||||||||||
Sbjct  962  GCAAGATCTTTGGTCAAAATTCAGCCCTTCTAATTGATAAGGCAATTGATACTGGAGAAAATCCTTACAAGTGT  1035

Query  901  AATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACC  974
            ||||||||||.|||||.||||||||||||||||.|.|||.||   |||||||||.|||||||||||||||||||
Sbjct 1036  AATGAATGTGACAAGGCTTTTAATCAACAATCACAACTTTCA---CATCATAGAATTCATACTGGAGAGAAACC  1106

Query  975  TTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACC-TTGAAAGACATAGGAGAATTCACACT  1047
            ||||||||||||||||||||||||||||||||||||.|||||| ||| ||||.|.|||||.|||||||||.|||
Sbjct 1107  TTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGGAAATCA-ACCATTGAGACACATAAGAGAATTCATACT  1179

Query 1048  GGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCA---------------------GAC-------  1093
            ||||||||||||||||.|||||||||||||||||..|||||||                     |||       
Sbjct 1180  GGAGAGAAACCATACAGATGTAAGGTTTGTGACACAGCTTTCACGTGGCATTCACAGCTGGCTCGACATAGAAG  1253

Query 1094  --------------------------------------------------------------------------  1093
                                                                                      
Sbjct 1254  AATTCATACTGCAAAGAAAACTTATAAATGTAATGAGTGTGGCAAGACCTTCAGTCACAAGTCATCCCTTGTAT  1327

Query 1094  ------------------------------------------------GTGA------------------TTCA  1101
                                                            ||||                  ||||
Sbjct 1328  GCCATCATAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTTGTGTGGAGTTCA  1401

Query 1102  CACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGT  1175
            ||.||||||.||||||||..||||.||..||||||.||||||||||||||||||||.|||||.||||||||.|.
Sbjct 1402  CAACTGGCAAAACATACTAGAATTGACTGTGGAGAAAAACCTTACAAGTGTAATGAATGTGGGAAGACCTTTGG  1475

Query 1176  TCAAAATTCATCTCTTGTAATGCATAAGGTC-ATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGC  1248
            ||||||||||..||||.||||.||||| ||| |||||||||||.|||.|||.||||||.|||.|||||||||..
Sbjct 1476  TCAAAATTCAGATCTTTTAATTCATAA-GTCAATTCATACTGGGGAGCAACCTTACAAATGTGATGAATGTGAA  1548

Query 1249  AAGGTTTTTAATCACAAATCAAACCTTG-----CAT-------GTCAT--------------------------  1284
            ||||||||.|.||..|||||||.|||||     |||       |||||                          
Sbjct 1549  AAGGTTTTCAGTCGTAAATCAAGCCTTGAGACACATAAGATAGGTCATACTGGAGAGAAACCATACAAATGTAA  1622

Query 1285  --------------------CG--------------------------TAGACTTCATACTGGAGAGAAACCTT  1312
                                ||                          ||||.||||||.||||||||||||||
Sbjct 1623  GGTTTGTGACAAGGCTTTTGCGTGTCATTCCTATCTGGCAAAACATACTAGAATTCATAGTGGAGAGAAACCTT  1696

Query 1313  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGA  1386
            |||||||||||||.||..|||||...||.|.||..|..|||.||||||.|.|.|||||||||.||||||.|||.
Sbjct 1697  ACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCACAGGTCATACCTTGTATGCCATCATAGAGTTCATAGTGGT  1770

Query 1387  AAGAAATCT-----------------------------------------------------------------  1395
            .|||||.||                                                                 
Sbjct 1771  GAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCGCAGGTCATCCCTTCATTGCCATCGTAGACT  1844

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1845  TCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAATACCTTCCGTCACTGCTCATCCCTTATATACC  1918

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1919  ATCGTAGACTTCATACTGGAGAGAAATCTTACAAATGTACAATTTGTGACAAGGCTTTCGTGCGTAATTCACTC  1992

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1993  CTGTCAAGACATACCAGAATTCACACTGCAGAGAAACCTTACAAGTGTAATGAATGTGGGAAGGCTTTTAATCA  2066

Query 1396  -------------------------------------------------  1395
                                                             
Sbjct 2067  ACAATCACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACCT  2115

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