Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NM_001321522.1
Aligned Length:
2916
Identities:
1221
Gaps:
1527

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct    1  ATGGCTCTTTCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAAGAGTGGAAGTGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||.||
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            ||||||||||||||||||||..||||||||||||||.|||||||||||||||||||.|||||||||||||||||
Sbjct  149  CTTCCAAATGCATGATGAAGGAGTTCTCATCAACAGCACAAGGCAATACAGAAGTGATCCACACAGGGACATTG  222

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.|||||.|.|||||||||||||||||..|||||||||||||||.|||||||||||||||||.||||.|||
Sbjct  223  CAAAGACATGAACGTCATCACATTGGAGATTTTTGCTTCCAGGAAATGGAGAAAGATATTCATGATTTTGAGTT  296

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAG  370
            |||||||.|||||.||||||.||||.||||||||||||.|||||||.||||||||.||||||.|.||||||||.
Sbjct  297  TCAGTGGAAAGAAGATGAAAGAAATAGCCATGAAGCACCCATGACAGAAATCAAACAGTTGACGGGTAGTACAA  370

Query  371  AGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTG  444
            |.|||||||||||||||||||||||||||||.|||||||||.||.|||||||||||||||||||||||||||||
Sbjct  371  ACCGACATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCATCTG  444

Query  445  CCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTC  518
            ||||||.|.|||||.|||||..||||||||||||||||||||||||||||||||.||||||||..|||||..|.
Sbjct  445  CCTGAACTCCACATGTTTCAGACCGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAGTGCTTCGTT  518

Query  519  AGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCC  592
            .||||||.||||||||.|||||||.||||||||.|||||.|..||||||||.||.|||.|||||||||||||..
Sbjct  519  GGTTTCAACATCCCAAAGAATTTCTTGTAGGCCTAAAACCCACATTTCTAAGAACTATGGGAATAATTTCCTGA  592

Query  593  AGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAA  666
            |.||||||||||||||||||||.|.|||||||||||..||||||||||||||||||.|||||||||||||||||
Sbjct  593  ATTCTTCATTACTCACACAAAAGCAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAA  666

Query  667  GCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGT  740
            |||||||||..|||||||.||||||..|||||||||||||||||||||||||..|||||.||||||||||||||
Sbjct  667  GCCTTTAATTATAGCTCAGTCTTAAGGAAACATCAGATAATCCATTTAGGAGCGAAACAATATAAATGTGATGT  740

Query  741  ATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACA  811
            .||.|||||||.||||.||||.||||||||.||||||||.||   |||||||||||||||..||||.|||||||
Sbjct  741  GTGTGGCAAGGTCTTTAATCAAAAGCGATATCTTGCATGTCATCGTAGATGTCACACTGGCAAGAAACCTTACA  814

Query  812  AGTGTAA-------------------------------------------------------------------  818
            |||||||                                                                   
Sbjct  815  AGTGTAATGATTGTGGCAAGACCTTCAGTCAGGAGTTAACCCTTACATGCCATCATAGACTTCATACTGGAGAG  888

Query  819  -----------------TGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCA  875
                             |||||||||||||||.|||||||..|||||||||||..||.||||.|||||||||||
Sbjct  889  AAACATTACAAGTGCAGTGAGTGTGGCAAGACCTTCAGTCGAAATTCAGCCCTTGTAATTCATAAGGCAATTCA  962

Query  876  TACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGT--CA  947
            |||||||||||||.||||||||||||||||||||||||||...||.|.||||...|||.||||||  .||  ||
Sbjct  963  TACTGGAGAGAAATCTTACAAGTGTAATGAATGTGGCAAGACCTTCAGTCAAACGTCATACCTTG--TGTACCA  1034

Query  948  TCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACC  1021
            ||.||||.|||||||||||||||||||||||||||||||||||||||||||||.|||||||..|||||||.|||
Sbjct 1035  TCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATCAAACC  1108

Query 1022  TTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACA--AGG--CTTTCAG  1091
            |||||||||||||||.||||||.||||||||||||||.|||||.|||||.|..||   ||  |||  |||| ||
Sbjct 1109  TTGAAAGACATAGGAAAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATG---CAGCAGGACCTTT-AG  1178

Query 1092  ACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCA  1165
            .||..|.|||..|||..|||..|||..|..|.||||.|||||||||||||||||.|||||||||||.|||||||
Sbjct 1179  TCGGAAGTCATCCCTTACACGCCATCGTAGACTTCATACTGGAGAGAAACCTTATAAGTGTAATGATTGTGGCA  1252

Query 1166  AGACCTTCGTTCAAAATTCATCTCTTGT--------------------------------------AATG----  1197
            ||||||||..|||.|..|||||.|||||                                      ||||    
Sbjct 1253  AGACCTTCAGTCAGATGTCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAA  1326

Query 1198  ------------------------------------------CATAAGGTCATTCATACTGGAGAGAAACGTTA  1229
                                                      ||||.|...|||||||||||||||||||.|||
Sbjct 1327  GAATGTGATGAAGCTTTCAGTTTCAAATCGAACCTTGAAAGACATAGGAGAATTCATACTGGAGAGAAACCTTA  1400

Query 1230  CAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAGACTTCATACTGGAG  1303
            ||||||||||||.|||||||||...||.|.|||.|.||||..|||||.||..||||||||||||||||||||||
Sbjct 1401  CAAGTGTAATGATTGTGGCAAGACCTTCAGTCAGACATCATCCCTTGTATACCATCGTAGACTTCATACTGGAG  1474

Query 1304  AGAAACC-------------------------------------------------------------------  1310
            |||||||                                                                   
Sbjct 1475  AGAAACCTTACAAATGTGAAGAATGTGATGAAGCTTTCAGTTTCAAATCAAACCTTGAAAGACATAGGATAATT  1548

Query 1311  -----------------TTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCA  1367
                             |||||||||||||||||||||||||...||||.|||.||.|||..||||..|||.||
Sbjct 1549  CATACTGGAGAGAAACTTTACAAGTGTAATGAATGTGGCAAGACCTTTAGTCGGAAGTCATCCCTTACACGCCA  1622

Query 1368  TCATAGACTTCATACTGGAAAGAAATCT----------------------------------------------  1395
            |..||||||||||||||||.|||||.||                                              
Sbjct 1623  TTGTAGACTTCATACTGGAGAGAAACCTTACCAGTGTAATGAGTGTGGCAAAGCCTTTCGTGGGCAGTCAGCAC  1696

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1697  TTATTTACCATCAAGCAATCCATGGTATAGGGAAACTTTACAAATGTAATGATTGTCACCAAGTCTTTAGTAAT  1770

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1771  GCTACAACCATTGCAAATCATTGGAGAATCCATAATGAAGAGAGATCGTACAAGTGTAATAGATGTGGCAAATT  1844

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1845  TTTCAGACATCGTTCATACCTTGCAGTTCATTGGCGAACTCATAGTGGAGAGAAACCTTACAAATGTGAAGAAT  1918

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1919  GTGATGAAGCTTTCAGTTTCAAATCAAACCTTCAAAGACATAGGAGAATTCATACTGGAGAGAAACCTTACAGG  1992

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1993  TGTAATGAATGTGGCAAGACCTTTAGTCGGAAGTCATACCTTACATGCCATCGTAGACTTCATACTGGAGAGAA  2066

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2067  ACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCGAAATTCAGCCCTTATAATTCACAAGGCAATTCATA  2140

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2141  CTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGGCCTTCAGTCAGAAGTCATCCCTTACATGCCATCTT  2214

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2215  AGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCAAGCCTTGA  2288

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2289  AAAACACAGGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTTGGGCGTGATT  2362

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2363  CACACCTGGCACAACATACTAGAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGAACTTC  2436

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2437  CGTCACAATTCAGCCCTTGTAATTCATAAGGCAATTCATAGTGGAGAGAAACCTTACAAGTGTAATGAGTGTGG  2510

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2511  CAAGACCTTCCGTCACAATTCAGCCCTTGAAATTCATAAGGCAATTCATACTGGAGAAAAACCTTACAAGTGTA  2584

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2585  GTGAATGTGGCAAGGTTTTTAATAGAAAAGCAAACCTTTCACGTCATCATAGACTTCATACTGGAGAGAAACCT  2658

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2659  TACAAGTGTAATAAATGTGGTAAGGTTTTTAATCAACAAGCACACCTTGCATGTCATCATAGAATTCATACTGG  2732

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2733  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACCTTCCGTCACAATTCAGTCCTTGTAATTCATAAGACAA  2806

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2807  TTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAAGCAAAACTTGCACGT  2880

Query 1396  ------------------------------  1395
                                          
Sbjct 2881  CATCATAGAATTCATACTGGAAAGAAACAT  2910

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.