Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NM_001348156.2
Aligned Length:
1499
Identities:
1162
Gaps:
166

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTCTTCCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGGTATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            ||||||||||||..||||||..||||||||||||||.|||||||||||||||||||.|||||||||||||||||
Sbjct  149  CTTCCAAATGCACAATGAAGGAGTTCTCATCAACAGCACAAGGCAATACAGAAGTGATCCACACAGGGACATTG  222

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.|||||.|.|||||||||||||||||..||.||||||||||||||||||||||||||||.||||||.|||
Sbjct  223  CAAAGACATGAACGTCATCACATTGGAGATTTTTCCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTT  296

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAG  370
            |||||||||||||.||||||.|||||||||||||||||.||||||||||||||||||.||||||.|||||||||
Sbjct  297  TCAGTGGCAAGAAGATGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAATTGATGGGTAGTACAG  370

Query  371  AGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTG  444
            |||.|.|||||||.|||||||||||||||||.|||||||||.||.||||||||||||||||||||||.||||||
Sbjct  371  AGCAATATGATCACAGGCATGCTGGAAACAAGCCTATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTG  444

Query  445  CCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTC  518
            .|||||.|.|||||||||||.|||.|||||||||||..|||||||||.||||||.|||||||||||||||.|||
Sbjct  445  TCTGAACTCCACATATTTCAGCCCAAAGGGAAAATTAATAATCAAGTGGAGAAGTCTATCAACGATGCTTCCTC  518

Query  519  AGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCC  592
            .||||||.||.|||||.|||||||.||||||||.|||||.|.|||.||||||||.|||.||.|||||||.||..
Sbjct  519  GGTTTCAACAGCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATATCTAATAACTATGGGGATAATTTTCTGA  592

Query  593  AGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAA  666
            |.|.|||||||||||||||||.||.||||||||.||..||||||||||||||||||.|||.|||||||||||||
Sbjct  593  ATTATTCATTACTCACACAAAGACAGGAAGTACGCATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAA  666

Query  667  GCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGT  740
            |||||||||..||||||||||||||..|||||||||||.||.|||.|||||||.|||||.||||||||||||||
Sbjct  667  GCCTTTAATTATAGCTCACTCTTAAGGAAACATCAGATTATTCATCTAGGAGAGAAACAATATAAATGTGATGT  740

Query  741  ATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACA  811
            |||.|.|||||.||||..||.||||||||||||||||.||||   |||||||||||||||||||||.|||||||
Sbjct  741  ATGTGACAAGGTCTTTATTCGGAAGCGATACCTTGCACGCCATCGTAGATGTCACACTGGTGAGAAACCTTACA  814

Query  812  AGTGTAATGAGTGTGGCAAGACATTCAGT---------------------------------------------  840
            ||||||||||||||||||||.|.||||||                                             
Sbjct  815  AGTGTAATGAGTGTGGCAAGTCCTTCAGTCAGATGTCATCCCTTACATATCATCATCGACTTCATACTGGAGAG  888

Query  841  ---------------------------------------CACAATTCAGCCCTGTTAGTTCACAAGGC------  869
                                                   |||||||||||||      |||| |||.|      
Sbjct  889  AAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCAGACACAATTCAGCCC------TTCA-AAGACATAGGA  955

Query  870  -AATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCA  942
             |||||||||||||||||||||..|.|||||||||||.|||||||||...||||.|||..|.|||.||||||||
Sbjct  956  GAATTCATACTGGAGAGAAACCACATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGAAGTCATACCTTGCA  1029

Query  943  CGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATC  1016
            .|.||||.|||..|||||||||||.|||||||||||.|||||||||||||||||||||.|||||||..||||||
Sbjct 1030  TGCCATCGTAGCATTCATACTGGAAAGAAACCTTACGAATGTGAAGAATGTGACAAAGCTTTCAGTTTCAAATC  1103

Query 1017  ACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCA  1090
            |.||||||||||.|||||||.||.|||.||||||||||||||||||||.|||||.|.|||||.||||.|.||||
Sbjct 1104  AAACCTTGAAAGTCATAGGATAACTCATACTGGAGAGAAACCATACAAGTGTAATGATTGTGGCAAGACCTTCA  1177

Query 1091  GACGTGAT-TCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTG-  1162
            |.|.| || |||..|||..||...|||..|..|.||||.||||||||||||||||||||||||.|.||.|||| 
Sbjct 1178  GTCAT-ATGTCAACCCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGA  1250

Query 1163  -GCAAGACCTT--CG-TTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTACAA  1232
             | |||  |||  || ||||||  |||..|||||.||..||||.|...|||||||.|||||||||||..|||||
Sbjct 1251  TG-AAG--CTTTCCGTTTCAAA--TCAAGTCTTGAAAGACATAGGAGAATTCATAATGGAGAGAAACTGTACAA  1319

Query 1233  GTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAGACTTCATACTGGAGAGA  1306
            .||||||||.|||||||||...||.|.|||..|.|.|..||||.|.||.|||.||||||||||||.||||||||
Sbjct 1320  ATGTAATGAGTGTGGCAAGACCTTCAGTCAGGAGTTATCCCTTACCTGCCATTGTAGACTTCATAGTGGAGAGA  1393

Query 1307  AACCTTACAAGTGTAATGAATGTGGCAAGGTTT----TTAATCGAAAATCAAACCTTGAACGTCATCATAGACT  1376
            ||||||.|||||||...|||||||.|||||.||    ||         |||||                     
Sbjct 1394  AACCTTGCAAGTGTGGAGAATGTGACAAGGCTTACAGTT---------TCAAA---------------------  1437

Query 1377  TCATACTGGAAAGAAATCT  1395
                               
Sbjct 1438  -------------------  1437

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